morexGenes - Barley RNA-seq Database

Contig contig_41137
Source Contig contig_41137
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_41137 (6828 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_41137

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_56775	1	1949 bp	MLOC_56775.1	Available	Available	LOC_Os02g55560.1, FRAME:+3, EVALUE:0.0, 13102.m06374 protein protein phosphatase 2C, putative, expressed
CDS Structure of MLOC_56775

Contig Sequence (6828 bp)

>contig_41137 6828 assembly3_WGSMorex_rbca.fasta
GTGTCGTGCCCGATTGCGGCGGCCGGGCCTTCCCGTTTGGGCGGGTATGCCTCTGGGCTT
CTCCTCCACGCGCGGCCCCGGCCCCCCCCCCCCCCCCTCCAGACCCTCTTCGTCGGAGCC
AGAGGTCCCCTGCGGCAGCAGTTCGAGCCGAATCGCTCCTTCTTCCTCGTCGTCAGGCAC
AGCAACAGAGAGACAGAGCTCACCGGCGGCGGCGGCGGCGAACCGGACATGTGCGTGGAG
GGATTCGAGGACGCGCAGATCGAGAGGCCGGCAGATTTCGTGGTCGGTAAACCCTCCTCC
CCTCCCCTGTTCTTACGCCCATTCGATTCGACTCTGTTTCCTTCTCTTTCTTTCTTTTTT
CTCGACCATCCCGCTCGCTGAATCCGGTGGTTTTTCTTTCCGCCGACGATAGAATACTAC
GAGATTCAAATCGGTTTCTGCTCGTCGCTGATCCGCGCGCGTTCGTTCCCTTGGGCCTGG
ACGATCGATTACTACTACACACTTTGAGTTTTGATGAGTGGAAGAAGGAGGAAAAAAAAC
GCTAGTGGGTTGGTTGCTTCGTTCACACACTTCGCGTGCTGCGCGAGCGAATGCTTCCCG
TGTCTCCCCTTCCTTCTCCCTCAAAAATCCACAGCCAAGCAGCAGCAGCAGCAGCAGCAG
CAGGGATTATTCAGCACTTACAGGAAGTAGTTTATTTACTTATTGCAACTGGAATTAATG
AACTACTCCCATTATCTCATCTTTTAGTACTAGTACAAGACTGCTATTAGTATTACTATC
AGTATTATCCCAACAATTATATTTTTGTTAGCAAAAAAATATATTACTGTATTATTATTA
TTATTATATCCTCTTGTGTGGAAGGTGTGAACAGAGGGATATGCCTTGAATTGTTCGGCG
GCCCAGAAGTTTCTTCTAGCTGCGATTAAGCGTGCCGCAAAAGCGAAATCTTTTTCCTTG
TCCTGGCTCAGCGGATGTCATGCCCCCCGTCTGCTTCTGCGAGTGCATTCTTGTTCCCAT
GCGGCGCTCCTCTCATCCTGTGATCGAAATCGTATGTGGGATTTCCGGTCGACGTGTATG
CTTGGCATCCTCTCGTCCGCTGTCCGCCACAAAGATATCTCCATCTCATCTCCTCTGACA
GAGATATTTGCATCTGAAAGTAGGACAAACTGAACTGTTCATAGTAAAATATATCAACTG
ATGCAAAGTTCACAGCTATAGCAGCACCCGGTTTCTTTCTTGGCCTCGACGGAGGAAGAT
TTGTTAATGGCTATAATCATCCATGATCCATCGTCCGTGTTGTTTACATGTAGTAGAACA
GTCAGCGCCGCCGGTAAAGTCCAGATAGTGCTGCACCCCCTTTCTGCATTCAGGCCAAGG
GAAAGGCTGGCCTTTTCCGCGCTGTCAAGCCTCCGGGCACGACACGTCCTTGGCAATTTC
CTAGTGATCTCTGTGCGCCTTTATAGGTCTGAATTACATAATCATGGGGTCGCTTTTGTC
CCTTTGGCTTGCAATTATGGGTTACAATGCAGGCAGGTAGTGGGCTATGCAGTGGTGCTC
AAGAATGTACACCTGGAGCCTTCACATTTCTCTGCTATATATACCAGCTTCTGCCGTTAT
ATAGCATCCGTGTGCATTTATCAGTGCCCACACTGAAAATGGCTAACTCGTGGCATTCTT
TGTCCACTAAGGGATTGCCTTCTGTCGCCGACTTGACCGAGTTGGGGTTCGGTTTGTACG
TCCCTTTCGGCTAGGTGGATTAGTGTTGCTGCAAGCCTGCAAGTCATCCACTGATGGTGG
CGACGTTGTTTAAGCTATTGTAGAGTTGTTGACGGAGTTGAAAGCTTGAGAAAATAGATT
CATTTAACCTGGCTATTGTTAGTAAGATGCTGAGTTCATCCTGTATCACATTATTTATAC
TAAATGTACATTGCTTTCCCTTATTGCAACTTTTTTTAAGCTGATGCAGTATCTTGTTCA
ATGAGAATTGCTTTTTGCTGTGACCTAATCTTCTGTTAATTGTGTAATGTGCAGATGGAG
AGAGTTTGTGAGAACACGGTGTCCATTGATTTCAAGCAAACTACAATGGTGACTGTGATT
GGAGAGAGTTGGCACAATTTTGTCCCAACTATCCGGTCAGGGGACTGGTCTGACATTGGT
GGCCGTGACTACATGGAAGATGCGCATGTGTGCATCCCCAACCTAGCCAAGAATTTTGGT
TTTAACATGGTGGATGATGAAGTTATTTCCTTTTATGGGGTAATTGCTTATTCACTCCTT
GAATCTAGTTCTTCAAATTCATATTAAATGCTCATCTTTTTTTCTTTTCTAAAATCATTA
TGTCCTTCCATTTCTCAGGTCTTTGATGGCCATGGTGGAAAAGATGCTGCACAGTATGTT
CGCGATAACTTGCCACGGGTCATCGTGGAAGATGCTGCTTTTCCTCTTGAGCTTGAGAAG
GCAGTCAGGAGGTCGTTTGTGCAAACTGATAGTCAGTTTGCAGAGAAGTGCTCTCTACAT
GATGGACTTTCTTCTGGAACAACCGCACTTACAGCAATGATTTTTGGAAGGTACTGTTCC
TGTGACCTGCAATCCTGGCTCTTCTTTTAGTATTTTCATTCCACTGATGACCAGAGAAAA
TCATAATGCAATAGGAGTTGACACTAGTTAACTTGTTCCTAAAGCTGCTTTCAAACTAAT
GCATCATAATTCAAAAAATCTCAACATGGCCTAAGGTTAAATTTCTCTAAACTGCTGCAC
TTGCACTAGGACCTCTTGTGATACTGCTACCATGCATTGTGTTATATGCCAATGCCAGTA
TGACTCTCATCAGAGTTAGCACCCTAGCTGTAGGTTGCTCTGTTATTGAGTGACCAGCAA
TGCTAATTGCTTGCATGTCTTGTGCAGGTCTCTTCTGGTTGCAAATGCTGGTGATTGCCG
AGCGGTCCTTTCCCGGCGCGGCGCCGCAATCGAAATGTCCAAGGACCACAGGGCCTGCTG
CCTGAATGAAAGAAAGCGGGTCGAATCCCTAGGCGGCTACGTCGACGACGGCTATCTGAA
CGGCCAGTTAGCGGTCACCAGAGCGCTCGGTGACTGGCATCTCGACGGGCTCAAGGAGAT
GGGCGAGCCGGGAGGCCCGCTGAGCGCTGAGCCGGAGCTCAAGATGATCACGCTGACCAA
GGACGACGAGTTCCTCATCATCGGCAGCGACGGCATCTGGGACTTCTTCTCCAACCAGAA
CTCGGTGGACTTTGCACGGCGGAGGCTCCAGGAGCACAACGACCTGAGGCGGTGCTGCAA
GGAGATCGTGGAGGAGGCGATCAGGCGGGGCGCCACCGACAACCTGACGGCGGTGATGGT
CGCCTTCCACCAGGAGGCCCCTCCCCAGATCAGGGTGAGCAGGATGGGCAGGGTGGAGCG
GAGCATCTCGGCCGAGGGGCTCCATAGCCTCAGGGTGCTCCTGGAAGGCCAGTGATCTTC
GGCGGCGCGCCATTGTCGCCGCCTTGTTCGTTCTACATTGTTGAGCGTCAACTGTAAGTA
CCGATTGCGGCCTCCCTGCTGTTGCTCATGTTTGTCCGTCCGTTCATCATCCATCGTCGT
CGTCGACATGCCAGTGGTGGCTCTATTGCTACCTGGGAGGAATAAAACCAACGAACCTGG
AGAAGGTCTCACGCGCCATTGTGAATTGTGAGGCACCTGTAAATATAAGTTGGGAGCTTA
GGGTTGGTAACAGAGTCAGTAGCGTGCATCCAGGGGGCTTTGAGGCTCATTATGAGATGA
GATGAGATGTTTTTCTTCCCCCCTGTTTCTATTTTGTCTGTAAAAGAAACAATCCTGTCT
GATGATCATTATTATATCAGTGTAACTAGAGTTGTGTCATGTGAATCACCTCCTCATTTG
TCATCCTGGTCCCACCCATCCACACCGCACGGATCCACCCATCGTCCGGAACGGTGCAAA
CCAGGACAAGGGAAGAGTCAACCAAGCGAGACGGCTCAGGGTCGACTTCCAGGCTTGATT
GCCAATGAAGGCAGGCTGGGACTGGGTCAACCATACAATATACAGTACGTAGTAGGTCGG
CGAGTAGAGCAGCATCATCATTGACGGACGGGAGAGGAAGCAGAGCACGAGGGCGAAAAG
GATCGGATGTGGGCGACGCAGCGCAGCCACCGAGACCGAACCACCGCCGGTCGATGGGAA
GAAAAGGAGAGGCGGTGCGCCCCTCCACCACCACCGCCACCGGACCTGCTCAGCGCCAAC
GCCAGCGCGCGCATCGGTCACCATCGGCGTCATCGGGAGCGGCGCCCGCACGTGGGCGAA
GGTCGGCAGCCCTTGACGGCGGTGGGCGGACACGTTGCGGGCAGAGTCGGTCCGCGTGTT
TTTACTATATACTGTCTCGGCTAGGCTCGAGTGACACGACACCGGCGGCGAGGCGAGCGG
GTTAGGCGACACGTTTGCTTGCTTATTAAGCTGCTTGTGGTCTTGGCAACGACACGCTTG
CTTGTTTCAGCTGCTTGTAATTCGTTCGGGCGGCGACACGTTTGCTTCGTGCTCACGCCT
GGCGTCCGTCCGGGCGGCGACAGCTCGCCGGCACGTTGCCGATCGACAAGACGCCCGCGG
GTTCTCGAGGCACCACGCACTTGCTTGGCATTCTACTAGCATCAGCATGTACCAGACCTT
TTGGTTTAGCAATGCAGTACTTCTACTAAATTATACTTTTTCCGTTTTAAAATAAATGAC
ATAGATTTAATACTAATCTAGTAGTACAAAATTTATACTAGTGTATTGTCAACATGCAAA
GAACGTAAGCAAATGGATAGAAACATAGACATCCTGAGAAACCCCGGAGAAAAAGGAGGG
CTTTATGCTTCGGAATGACTTTAATCTTGTCGGGGCGTTCTGAGATTTTTTATTTTCAAA
AAAGCAAAACTTCTAAAGACATTCAAATGACCAATGAAATTTAGGCTTTAAATGATGGAA
ATATCTGCACCTTTACAATTAGACTAATCCTAAACAGTAAACATGATAATCATGGTATAC
AATTATATATTTGAATATATAGTTTTTTTTAAGGATATTTAAATATCCATCTATGGATGG
GTAGCAGCTTCCATAGAATATAGGCAAAAGTGTGTGCATAAAGCATACGCATATAACTAT
ATATTTAAATATCCTTGCAAAAAACTATATATTCAAATCATTTGTACTATCGGGAGGGAG
ACCAGGATCATGGAGGTTGTGAGGGTACATTATATATTCAAATCATTTATACTATGGACG
GGAAATGAAGTCAGAAAAATAGCTAAGGTTGGAAAAAAAATCCCATGCACCTATTGGCTT
AGCCAAGACCAATTAGTCATGTCGGGGACTTATTGGTCTTCGCTAGGCCGACATGAACTA
ATTGGCCTAGCCAAGGCCGATTAGTCCCTGTCATGCACCCACACATGCAGGTTGATAGGC
CTGTCGGCCTAGTCAAGGCCGACTGGGACTGATTGGTCTTGGCTAGGCCGATTAGTCCCT
GTCGGCCACGTCTAAGCCGAGGCAGGTATATATATATTTTTTTTTAAATTTGAGCATTAT
TTTCCGAAAAGAATAAAAAAATGCAATATTTTAAAAAAAATAGCGATTTCTTCAACTGTT
TTATCTAATGTTGGCATAGGTATTAGCTACAATTTATGTGTTGGCAAATGCTCCCTATAC
AACAGATTGATGTGTCACTAAATCTTGACTGTGGTGTAATGAGTTGTGAGATATTACGTT
CACCCCTTTGGTCCATTTAATCTTATTTTATTGTTCGTATTATTGCTGAATTGTTATTTT
TCAGCAATTCATTTTTTTGTGCTGCTCTATATTTTTCCTTTTTTTATTTTTAAACAAATC
AGGTTGACGTGTATATGTGATAACAGTTTTCTACCACCTTGGCGCAAATTGTTTAAAACC
ACCGAAAGTAGGATAGGATCAAAGGATAACGTAAACAGATTTGAATTGTTTATTTAGAAA
ATGGGAACAATTTTTCATTAGAGTCTACTGGGGTTGACGAGTCAACTTGCACGATTATCA
ACGTTGATGGGTGTATTTTCGTCACAATTTTAAAGCGTGTAGGTACACTAAAAAATACGT
CCAATTGAGCTTAGATACATCGCACATCGTACGCAACCTTGTGGCCGAAGGAGCATAGAT
ACATCGCACATACCTGCGAGATGGACACTCCTAAAGATCAGATCAGTGCAAGACCTGTTC
AAGTCAATGGTGCTTTTGGTGCCTTCCGGTCATGGGCGTTCCACTACCGCCATCAATTAG
CACTGTACATTAAGGTCATCACATATTCACATATCTAGGAGTATCTATCTCCAGCTCAAT
CTCCATCTTTTTTTTATGCGCACATCACCTGGCCGCAGGGACGGAGCCAACATTCATGCA
TACAGGGGGTATGTTTATTCATGAAAGGGATAAAGTTTATATGTCTGAAGTAAAAAAACT
GGCTGCAAAAATCATAATCATAGTATAAAGATCAATTTGTTAGGGGGTCTAGCCCCCCTT
CCCCCCTAAATTCGTCCCTGCCTGGCCGTTCCTTGAAGCGAAAGTATCATCCCCGCGTGC
GTGCTTAGAGCAACTTCAACAAGCCGACTCAAATGGAAAACAATTTTGTCCGCTTTTTAT
CTGTCTGGGTCGGCCAGACGAACACGAATGTTCGCTTCCGCGTTTGGGTCGACGAATGCA
TCCAACACTGGCCTGATCCATTTTAACGACTCGAAAAAAATGCATGCGTATTTAAGATAA
AAAAGCAAGGGAAAAAGAATCAGACGTCAGGAGCGCCCGTCGGCGCCG