morexGenes - Barley RNA-seq Database

Contig contig_41116
Source Contig contig_41116
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_41116 (7865 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_41116

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_56764	1	991 bp	None	Available	Available	None
MLOC_56763	1	1186 bp	AK250329.1	Not available	Available	None
CDS Structure of MLOC_56764

CDS Structure of MLOC_56763

Contig Sequence (7865 bp)

>contig_41116 7865 assembly3_WGSMorex_rbca.fasta
AAACGATGATAGACCTTATCCTCCTACCTGATCCACAACCTTGTGCAGTACCATTGTCTA
TTCTCATATGTTTCAACATTCGAAATGTTGTGTTTGTAAAGGACCATGGTCACTTAAGAT
TCTCCAATGCGTGACACGTGAACTTTTGTAGTATTTTTTATCTTTCTAATAGTGAACCGC
GAGCAAATTCCGCATGGCGCCACCGTATTTTGATAATTTCCTAAGCCAGTGACCTAACTC
CTCGTATTTTATAGTTACGTAGCAACGCACGGGGGGCATTGTGCTAGTAAATATACTAAA
TATTTAAAGAGTCTTGATTTTTACAAACGGCGATGCTATCACATCGAACCTGGAACAAAA
TAATCCTTTAGATATCTATATCTATATATATATCTTTTTACTAATAAAGGGAGGTGATAT
TCTTGGTTTGGTTTGGCCATTAGATTTTTTCGCCCTTCATTCGGTTGGGCCGAGGATGGG
CATTCGTATAGTACTATAGTACGCCAAAAAAACTTCTGCGTGGGATGGACTCGAACTCGT
GATGGCAGACAACAATGCAACGTCAGTTGCCAACTTGGCAAGCCAACTCTTGCGAACAAT
TCCAGGTTGTATCCTATGTAAACATAACCTCGAATGAATTATATATGGAACCAAATTCAC
ATCTAGCCTTAGGGATATATCAGGCTAGCTTCCCCCGGTTTAGGCCTCCGCCCGAGCTAC
TAGAGTTTCACGCGTGCCTGACACGGACTTCAGTCGAACAGCCCTCCTCTTTGCCATAAA
TAGCTCCCAAGCCCTCGATCGAAAGTCCGCCCGACTCAATCGCTATCTCAAGTTCCGCTC
GAAATTGACCCATCCGAAGGTTCCGACCTAGTCACCACTGACTTTGCTGGAAGGTTTTGA
TGACGACGAACGGTTCCAATCCGGTTGTTCCCATTTTTTTGTAGGTCGCTCTACATGGTA
TTTTTCACGGTTTGTTTCCTAGTTGGATTCTTCAACTCCAATCCGAGTTCCTGCAGATCT
CATCTCATGTTTGATGCCATGGAGCTGGACGAGGTTTCGACGGTATGGCAGCACAGCCTT
CACATCGGCCTCGTGCTCTCCTTTCTGCCTCGACATCTTCCCCATCGTCCCGAGCTCAAC
TTCCTAGACACGCCTCCTCCGCGTCTAGAGAGTCATCGCCTCGCTTTCCTGTGACCGGCC
CAGGTTCCCTCAAGCTCCTCCCGTCTCGCCTCACTCCCCTCCGGCCATCGTTGAATTCGC
CCAAGTTAAAGCAACGAGGCTGGGGAACAGCCACTTGTATGGGCGGTGGGTGGGCTCGGA
CCTGGAGGCAGCAAATGTGGTGGTGTTTGTCGTACGACGTGCACACTGGAGCCATGTTGG
ACTACATCAGTGGCGCGGGTCCTCGATTGGTCGTCAGCGGCGGCATGCGGCTCAAAGACT
CGGCTACATCCTTTATGGGTAAACTTCTACGCAGTTTGTTCCTAGGCAACGGAGGGGTGC
ATCGCTAATCAATCTGATAATTACTTATAAAGTGTGATACTCTAAGGAGCTAATGGATAG
GCTTGAAGATTCCTTGCATGATACGTGCATGTAGGTGAAGGCCAAGGAGAACATGGCTGC
ACGGCGAGATGGGTGAAAAACTAAAGCATGGTTGCCCCTTTGCATTGACTTCTTATCTGA
CAGGCAATATGCGAGCATGTTCCTTACATGACCACCAATATTGTCTAGAGAGCCGACCAA
AGGACACGATACTCCGTTGGCCACAGGTATATATGATATGAACATGGGGTGTGGCACGCC
ACCTGTTTGATGCTTTACAACTGAAGATGTTTGATGCTTTGTTTTGTTGACTGTAATTTT
CAGTGACTTGCATCAATGGTGCTGCTTCAGGAGCTACTTCTCATAAAAGATACAGAGGGT
TTGCTTGGTATTTAGTACTCCCTCCGCTCCTAAATATAAGTCCTTTTAGAGATTTCAATA
TGGACTACATATGAAGAAAAATGACTGAATCTACACTCTAAAATACGTCTNNNNNCATCC
GTATGTAGTTTATATTGAAATATATATAAAGACTTATATTTAGGAACAGAGGGAGTAGTT
TATAATAATGGGTCCACAATTTTCTGTATCCTGAACAGCAATATCACTTCTTTGTATCAC
TAAGTACTTTATGCTCATGCTTATGAACAGAGTCATATGTGGCACTGGAGGTGGCCAAAG
GACGTGGTATAGAAGTCAATATGTGAGTGAATCATATGTGAGCAACACACACCATTCAAG
AGTAACAAGTAGGCTAATGAAGAGGGATAATGCAGTCTCTTCTACATCTGTCTTGGTCCG
AATGCAAATCAGGAATAGAGGGAATAGTACAAAAATTTTAAACGTGAATATCACATTTCA
GTATAGCAAAAGGCTAGAATTGACCCACATACTGTTGTAGAAATTAGACTGTTTACGTAG
TATGAGAAATATGCAATATTATGTACTCCCTCCGTTCCTANNNNNAAGTCTTTTTAGAGA
TTACACTATTGAACTAGATACGGATGTATATAGACATNNNNNNNNNNNTAGATTCACTCA
TTTTGTTCCGTATTTAGTCCCCTATTGGAATGTGTAATAAGACTTATATTTAGGAACAGA
GGAAGTATAAATTGCCAGAAGAAATGCTTGTTCAAAGCATGTGGAATCAGTTGTTTATTT
ACATGTGCATACTGGTTCTAAAGAGATAGTTGTGTAGTCTTAGTTTGTGATAAAGGTTAA
TAGCATGTTCTAGACAGTAAAATTTACTCAGTCACCACTTTTATGAGCAGTTGTGTTCGC
GGATCTAGATTGAATTGGATGGAGAAAATAGGGTGATGGTTTACCCAGTGCAATGCACAG
GTTAGGAACATTGTAATTCTGATAATTTGATAACCCATACAAGAAGTAACAGTCCTGACC
TGTATCAGAGCAGCTGCTGATCGGCCAGCTCCAGCGGCTGCACCAATGGGAACAAACAGG
TGAGGAAACACCGGAGTCAAAATCTCCAGCCCATAAGCTGTGTTTTCCAGAAGATCTGCA
AACAGCCGCCATCCCTTGGGGTTCACATCAAAATGTCGCCCAAATTTCGACAACAGTATC
TTGCTCAAGTAGCCAAGCCCATCTTTCAGCACCCAATTCACTGCGGCGGCCGTAGGAATC
GCTCCTTTACCCAAACCAACTGCATACAGCAACGCCTGCAGAATACAGTTCACCGGATAG
AAATACTAAATTTTACCTGGCGGACTCTAGAATTGCACATATATAACTATCACACGCGTT
TACGAAAGATACCTGCGTAGAGAGCACGCCGCTGATCTGGCTAGCAACACCTTGCACGCC
CCGCCACAGCGAGTAGTGCAGGTAGTCGCTGCTCACGCTGTGCGGGTATCCATCAGGCAG
CAGCAACTGAAGAGCAACATCTGTGCATCGCCGCCATGACCGTTCAAGTTGCCTCCGCAG
TTCGGCAAAATTAGCAGGGCCGGCCCCCGTCTTTTCAATCCCCTCTTCTTGCTTCCGCTT
ATCGTCTCCCGCAACGAGGTATGAAGTTCCGGTCGGGTTGGGTACGAGCAGCGTACGCGC
ACTGCCCCTCACCTCCCAGACGCCACCGCCGGTTGCTCCGAGGGCATCCGCGAGGGCGGA
TGGGATGGAAGCGAAGGCGTCGGACTGGAGGAGCAAGAACAAGAGGAAGAGCTCGGGATG
GAGGGACTGAAGCCACCGTCGCCACCCGTCTCCGGGCTTGTCGGGAGGGTCTCCTCTCCC
GCCTTGCCACCAACCCCCTCCTCCTCCGCCACCCCCACCCCCACCATGGAAATTGCCATC
TCCGAATCCGCCGGAACCGGAGGTCGCGAGCGGCGGAAGGCGGAGATTGGCGGTGAGGCG
CGGGAGGTGGCGGAAGCGGCTAGCGGTGGTGGGGCGCGAGGATGGTGGGATGGCGGCGAC
GACACGAGGAGGCGGGGGGAGAGGGGAAGGGAGAAGGAGGATGAGAGATTGAGACGAGGA
CATCAAGGAAGAATGGTTTGGTGAGAGGCGGGGTTGGGACGACGAGGCGGAGGTGTCTAG
GAGGGAACAGAGAGGCGGCCGGCGCCGGCGGCTTGGAGTTCTCAAGCATGGGACCCGTCC
AATAAGGGTGGCTTCGCACAGGCAAGTGACTGGGCCGCCGCCGCTAGCGAAGCGACTGCG
CTGGCCCAGTTAACCAGCTCGTTTCTTTTTCCCTCTTTATTTACTTATTTTCCTTTTCTT
TTTTTGTCTTATTCTTTATTTTCTTTTGTGTTTCTCATTCTCTTTTTTCTAAAAGGTTCT
CTGTTTTTATTTTTCTAAAATTTCAGCAACATAATCAGCTTTTGTATTTACAAACAAAAA
TTATAAATGGAATTATTTTTGAATTTCTCAAGAATTTTTATAAACATAAAATGTTTTAAA
ACGTGATCACTTTAAAGTATATAATTTTTTTTGAAAAAGTACATTTTTTGAAATTTGTAA
ACAATTTTTGAACTTGCGTAGAGTTTTTGAAACATGAAGATTTTTTGAAGTAACGTGCAT
TTTCAGAACATGAAAAGGTAAACATATTTTATAACCTGAATAATTTTTTAAAAATTCCTG
AACATCTTCAAATCATGAACATTTTTAGAAAAGGTGAACAAAAGTTGAACAACTTTTCAA
TTTGTGACATATTTAAGAAAAAGAGGAACATATTACGTAAAACAGAAACATTTTATTATA
AAATTGTGAAAAGAATTTATGAAAAAAAGAACATTTTTTCAAATTGGTAAACAAATTTTG
AACCGAGAACAATTTTCAACTTATGTACACTTCTTGAAACACGGACATTTTTTCAACTTA
CATACACATTTTGAAAAGGCAAACATTTTTAAGAAGAAGAACAACAATTTTCAAAATTCC
CGAATATTTTCAAATCATGAATATTTGTAGAATTGGTGAACAAAATTGGAACAAGTTTTC
AATTTTGAACAATTTTTTAAAGCGAAATTTTGTAAAATATTAACTTTTAGTATAAAAATG
TGAAAACAAGAACATTTTTTCAAAATTGTGACCAATTTATGAAAAAAGGAAAAATAAATA
ATTTTGTAAATAATTTTTAAACTGGGAACATTTATTGAACTTATGTACACTTTTTGAAAC
ACGAACATTTTTGAATTTAATATATTTTCTGGAAGGGCAAACATATTTAGAAAATGATGA
ACATTTTTTAAAATTCCCGAACATTTTCAAATCATGAACATTTTTTAGAAATTGTGAACA
AAATTTGAACAAGTTTTCAATTTGTGAACAAAAACTTATAAAAGGAAACATTTTTTGTTA
AACAGGAACATTTTTTATAAAAATGTGTAAACAAGAACATTTTTTGAAAATTGTGACCAA
ATTATGGAAAAGGGAACATTTTTTGAAATTTGTAAATAATTTTTGAACTGCGAACATTTA
TTCAATTGATGTACACTTTTCGAAACACAAACATTTTTCAAACTTACGTATATATTGTAG
AAAGTCAAACATATTTAGGAAATGAAGACCATTTTTTAAAATTTCCGAAGATTTTCAAAT
CATTAACATTTTTAGAATTTGTGAACAAAATTTTCAATTTGTGAACAAAAACTTAAAAAG
AGAAACATTTTTCATAAAACAGGAACATTTTTTATAAAAATGTGAAAACAAAAACAGTTT
TTGAAAATTATGACCAAGTTATGGGAAAAGAGAACATTTTTTGGATAATCCTGCAGTTTT
TTTAATATGAGAACAATTTTTTAAACATGGCATATTTTTGAAAAAATAAAGACATTCCGA
AAGCAAGAACATTTTTTGTAATTCCTGATTATTTTTGGAAGCACGGACATTTAAATATAA
TGGTGAACAAAAGTTTGAACACGGAAACAAATTTTGAAATTCAAAACAAAAATTAGAAAA
TGTCAACCAAAAAAATAAGAAAAGGAAAAGAACGAAACTGAAAACAATAGCATATTTGGA
AGAAAAAATAGAACGTTCTATAAAAATTCCAAATATTTTTTGAAAATATCTGACGTTTTT
TTAAATCTCGAACATATTTCAAAGTTATGTTTTTTTAAACGGCAATTAATAGTAATTTAT
AATATTTTTATAAAAGCAAGAACATTTTCTGAATTTCAAGAACAATTTTTCAATCATGGA
CTTAGTTTTAAAAAATGTAACCTTAAAAAAAGAAAAGAAACAGAAACAGAAAAAATACGA
TTCAGGGAACCTTCGGCAAGCGAAACTGGGGCCGCCCAAGTCTTCTCATGAGGGTGTGCC
GAGCCCCGACTATTTGACGCAGAATGAGTCAAATAGGGATTTCTATGAGGTTTAGCGGCA
GGGTTCACGCAATATGGAAATTGGGCTGGACTATGCACAAGGGCCTAACAGGCCTATAAT
TTGTGGGAAAACAACATGCGTGGAACTTTGGGAATCGAGAGCGCTGAGTTATATTTTCAA
CGGTACGACCCCTCAAAAAAGTTCAACAGTATGACCCTTCAAAAAAATCAAAAGTATGAT
AATGATGTCATATACTCCCTCTGATCCTAAATATAAGTCTTTTTTAAAGGTTTTATTAAA
GGCGCTGCTAGAAATGAAAGTTTGGAGCCGTTGGATCCTAAATATAAGTCATTTTTAAAG
GTTTTATTATCAGTCGTCCGATCAACACGTTGGGCCGTTGGATCCTAGCAATGTCACGGT
AGCAACGCATCGCAACAGCTTCAATAATGTGCCATGGCAGCCCCCTGGGATGCTCCAACG
CAGCATCGACGGCTTCCATCGAAGTCCATTGCAACTCTGACCGAGCTTCATTGCAGCTCC
CACGAAGCTTCAACGCTCTGAAGAAGCTCCATTGCAACTCCGGTCGAGCTCAATTACAGC
CTTCACGGAGTTCCGACAGCTCCAACGAAGCTATATTTCAACTCTGGTCGAGCTTCATTG
GAGCCCCCAGATAGCAGCACTGGCAGCCGCTGAGGAGCGCTACATCACAGCGCCGGAGGC
GCCGACAAGTACTCCACTGAAGCTCCACCGCCTGCGACTTGCAGCATCAGCAGTCGCCGA
TGAGGTTGCATCGCGTCATGACGTTCGGCGACGAGTTGCTGAGTTGCAATGCAAGCGAAC
GTCAAGAACGAGGGTGCATAGCGAGTATTCCGGACGCGGAGCTTGCTGCATAGTGGTTGG
GCTGTGTGACGTGATGTGTGGTGGCAGCGGCTGCACCACCATGCAGTGGTAGCTGATGGG
TGAGGAACCATTGAGGATGCAAAAAAGGGGATCACGCGGAGGAGAAGAAGAGTTGGTGAG
AAACGTGTAGACGAGGCCAGTCTTCGTGAAAGGCTAACATCACCATCAGGAAAGCGTTGT
GTGGTCGTGATAGAGGACACGCGCCACACGGAAGAAGCGGCTTACGCGGGACAGATATCA
GTCGGTTTATTTCAATACTTTTCTTTTATTAAAAGACTACATACATACGATGTATATAGA
CATACTCTAAAATATAAATTCACTTATTTTACTTCGTATGTAGTTCTCTAGTAAAAATCT
CTAAAAAGATTTATAAGTATTAACAAGAAATTTACCATAAATACGAACATTCGGGTAGAC
AAGAGACCCACTCAGACACCCACATCTAAGAAAACTTTAGGCTAACTTCTCACAAATATA
TGCAAACCGCCAACACCAACACTTCATTCAATACTTTGTTGGTGTTGAATATTGTTGGGG
AACGTTGCATGGAAAGCAAAAAAAAAATTCCTACGCATGCGAGAAACCTATCATGGTGAT
GATCATCTACGAAAGGGGAGATCGGATCCACATACCCTTGTAGATCACTAAGCGTGAAGC
GTTAA