morexGenes - Barley RNA-seq Database

Contig contig_41083
Source Contig contig_41083
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_41083 (9243 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_41083

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_56717	1	3040 bp	MLOC_56717.1	Available	Available	LOC_Os10g34810.1, FRAME:+1, EVALUE:3e-145, 13110.m03108 protein expressed protein
MLOC_56718	2	3888 bp	MLOC_56718.1	Available	Available	LOC_Os10g34820.2, FRAME:-3, EVALUE:0.0, 13110.m03110 protein CDT1B - Putative DNA replication initiation protein, expressed
CDS Structure of MLOC_56717

CDS Structure of MLOC_56718

Contig Sequence (9243 bp)

>contig_41083 9243 assembly3_WGSMorex_rbca.fasta
TTCGGCGCCAGATCGTGATTGGATCATGGGACCGATCGGATTGGATCACGAAGACGTTCG
ACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTACAAGGGTATGTGGATC
CACTCTTCTTCTCATAGCTTGTTGATCTCCGTAGATGTATCTTGGGTGTTCGTAGGAAAA
AAAATTTGTTTCCCATGCAATGTTCCCAACACTTCAAAGCTAAGAAGCTGGTTGTAGAGC
TCGACGACGGAGACGGGCTCGACACGAGCGGATAGAGACAAGACCTTCGAGTTATACTCG
ATGTCATGGCCCTTCAGCACAAAGGAGACGACCTCCTCATCAGAAAGAGGAGACCCGGTG
CAGGCGATCTCATCCATCAAGGTCTTGATCTTGGCGAGATACTCATGCATCCCCATGTTG
CCCTTCTGGAGGTTTGCAAGGGCGGTGCGAGTGTTTACGAGCTGCGATTGTGTTTACGCA
GCGAAGAAGGCGTGGATGGCGCTCCACACCTCGGCCGATGTATGGAGAGTTACGACATGT
GTAAGAACCTCATGTTAAAGAGATCCCATAAGGTATCCTTGTACTTGTTGTTGTTGGGCA
TACCAGATTGTCCGAGCATAGTTCAGGACCTGCTCTTCCTTCCCATCCTTTATGGATGGT
GGCAGGGGGCGCCGGGGTTGCGGCGTCGAGATAATGTTCCATCTGCGCCCCTTTGATTTG
AGGCAACACAATGGCCTTCCAGAGAAGGAAGTTTGTCCTTGTCAGCTTCTTTGACATAGG
TGGCCCGAGGGAGCTAGCGACAATGCTCGAGGAGGAAGACGATGAGTATGTGGAGCTGGA
GAATTGGGTGGTCAGGGAACTCATGGTGGATGTGGCGAGGGTAGAGGGAGTGAAGGCAAT
GGTGGAAGCGGCGGTGTCGGTCATGGTTCTGGTTTCTCTCAACGATGGCTAGACCGATTT
CCTCTCGAGGCTTTGAAAAGCTTTCTCTCGATTAGCTAGATGCGTGAGGATAAGTTCTGA
TGACCATGTAAAGATTGGAGAAACGTTGAACCTTTTGGTCTCGGGCCGTGGCATATATTG
AGAGGTTAACATGGATTACAAGTATAGGAGTATCGCTAGGATTCCTTCAAAGATCGTACA
CGAGAGGGAAAGCGGTTTACAAGAGAGGGAGAGTCGGATAGAAGAACAGATAGAGTTTAA
AAGGAATACAATAACTCTATTAATCTATCTTAACATTACGGACTGTCGTGTATGATCTTA
TCAAGTTGGTGTTCCGTATCAAGATCACTAGAAAATGGCAACTCCGTTTACGCCAAGGTG
GTGGACGAGTGCGAGCGCGACTCCGTGCATGACTGTGACGATGATCACAACTATGAGCCG
CTATGCGCCAACAACATAGTCGACGCCTCTCCAGCGGTGTGGGACGCGTTGTGGCTCGAC
CAGAACGTCGACATGGAGGGCATCACCTGATCTGACGAGTGAACACCTTAGTTTTCTAAA
CAATGGTGACAACAGGTTGCAGCCTGCTGGTACCACTTTGTCAGTGGAGTGTCATGCATA
TAGTGTTTTCATTGTCAGAGAGAAGCCCGGTTAAACAGGTACCATAGGGAGGTCAGATTA
TGTACTATGATTGCGTGATTTTATAAAATAAACAGCGCAGCCTATGGTTTAGCACCATGA
GTTCTTGTGTGTGATCTTCAAGCAGTGTGATGCATAAAGAATTTGGAAACACTAAACATT
CGAGACGCTTGAGAAAGCTATACACTCATTTTCAAGGGCAGCTGAACAAGTACAGCAAAC
ACATCATTCACATTTGTAGGAGTAACTTAAAGTGTTCACAGACATTGCCAGTTAACACCA
TAGAAAACATTTAGTCGAATTTCTCTTGCACGGTTGCATCTAAGTTACAGCATTCAGCAA
ATGGTAAGAAAGAAGAGTTCAATGCTACATGATGCAAATTCAACTCACGTTACAACTCAG
TTCAATTCCAGCATTAAGCATAAAATCAACAAATGGAGCAGCTAAATCAGGGGCCAGGCA
AAAGCATGAAGAATTTATCCGCGCTTGTTGATGCTTAGTATTTCAGTAAAGCACTAGATG
TGCAATCCAGATGATTCCACGCTGGTCAAATCCCGAGAAATCAGTACATACAGCTTTAGG
TTCTTCGGCTTTGCACAGATTGTCTCATCTCAAATGACTTCTGTGAGTCTTTCCCGAACT
GACTTCTGATCTGATATTTGCTTGAAGCTGCCATGGGTACAAAACGGTGTCAATACCTCA
TGCCTTTCCTACAATATTTATAGCTACAGAACACGTAAAATTATGCTAATAAACAAAACA
TCAGACGGGACTTGCCTGTAAAGAATTTCTCCACCACGTAGCTCCTTAGATATCCAATCA
GGAGACAGATCCTCTAAGATATGCAACTGCTCTTCTATCTCTCCTGTTAGGTGACAGGCC
AGATATGGGAAAGAGAAAGGACAATAAGTACAAACTTTGAGAAAGATTAAGTACAGAAAG
GTTGGAACAGATAGATCAACTATGTACCTGTCTCTTCTATCTCCAAGTTATTAGCAAGAA
TATTGTGAAAGAGTTCCTGTTTAGTGATTAGTGAATTCTTGGTAGATCCAGAGATACCAC
AGACTACGTCGAATGTGACACGTAAAGAATCTAGCTTTTCCTGGGAATTCGTTGAGGATA
CTTGAACGGTTTTGTTATCATTTTCCTGCAAGTAATGTGCTAAAAATCACTACAGTGAAA
CATAGAAAATGAAGACAATAATCAACAATGACTAGACAAGTATGTTCTTTCTTATACAGT
ACATTTTTACCCTGCAGCAAAACCAAGAATTTGTCCTAACAAACCATCAGTGTCCCTCAG
CTCAGGTTATGATGTCACAAGATAATTGGCATTTTACTGTACTCTAATGCTGCCTAATTT
CAAAGCATAAATTATTAAAGCAAATGAATATAACTTTTGGCATCACTTCAACAACAAAAA
AAGTCACTGCAGAATTATTTAGTACACTGCCAACCTTCTTAGTCGCTAAGAGGTCTATTC
GATGCAACTTATACAACAATCATGCTTATGAGAACAAAATGACATATATGATGCATTGCA
CAGTCAAAATTTTAAATGAATGAGAATGCAGCAAACATATCTGCTATGTAGTTATGCAAT
TCCTGATGGCATTTAAGAAATTCATCTTCCAGTGTGCATTAACCCATATGCAAAAATACA
TATCCAAGCATAAGAATCAAGTCACATACCAACAATAGGTCAGTAAAAGTAACTGTTTCT
TCTGGGAAAAGGCATTTTCCAGTTGTAACCTCAGGTTCTGTGATAGAGGACACCCCATCC
TTGTCAAGTTTTGATGTGTCAGCATCAGTGGCAGAAGGGCTTTCATTAAACTTTGATGGT
GAGAACATTATTAGTGATCTGCGAGCTGAATTGTTAGATCGTGCTTCAGAGCCATGTCTA
CTTGAGGTTTCATGTTTCGCAACTGGAGTGGGCAATGGCCTTTTTGGTGTCTGCATTGCC
GGCGTTTCGGCCATCGAAGGTGAATTTGAGATGCCTTGCTTTGGTGTACTGTTTTCACAG
AAAGAGATCGAATGGCGGTTTGGAGTATCAGAAATATTGGTATTGAGTGGAACCGAGACA
TGCTTGTTAGAGCTTCTATCTGGACCTCCTGTATCATCAGCACCCAGGGAGGTCACTTCT
ACTGGATCAGAAAGTAGTCGAGTCTTCTCAGTAACTTTAGCAATACTCTTCTGGGACATG
AGTTTTTGAAAAGATTGTGGGAAGTGAGAAGCATTTGAAAATCCATTTTCAGAGGAAAAT
TCAAGAACTCCATCAACAGAGTTGTCATTATGCAGTGCATCAAGATATAGCTCCTCCCTT
GAATTAAAGGGTTCTGGTAATGTGGCCTCAGGAACATCTATACCCTGCATACATAAAAAA
TCCAACAAGAATGCTAAGATAATTATCATGACCATAAAAAAAGGGTTATTAGAGATGGAA
AATAAGGAACTAGAGTTGAGAGGCATGGGGGGTGGGTGCTCCAACATGACATGTCATACA
GCGAAAACTATTAAAGATGGAAAATAAGGAACTGTGTTCAGAGGTGCTTCAAGCAAGTTA
CAGGACATGTCATACAGCGAAACTATTAAAGATGGAAAATAAGGAACTGTGTTCAGAGGT
GCTCCAAGCAAGTTACAGGACATGTCATACAGAAAAACAAAGGAAAACTAGCAGTTGAAC
TAAGTTTAGTACCTTATGATGAGATCCCAAGAAGCACAAAAGCTTTGAGCGAAAAGCCTC
ACAAATTGCCATCGCTGGAGACTCTTGAGGATTATTACATTCCACAACGTCGTTTAGAAG
TGTAATTTCCATGTCAGCATACATGCATAGGCTTTTCTGATCATGCAAGAGTATCCTATT
TATCTGGATTGCTTCTGGGAATAAATGCTTCATCTGGGCCAAATGAGAGTACAAGAACTT
TCTGCAATGAATGAAAATCGTCATCAGACTCCAATATATGGATAATGATTTTACAGACAT
ACATTTGTCATTGTCATTAATACCTCTTCGTTAGTACTTCCACCTGGGTTGCAATGTTCG
TAAATGTAGGCATCTTCTTCCTCAGGCACAGCAACCTTATAGAACTCTCCATCCGGTTGA
AAAGATTAAGCAAATTCTTGTGCCTGACATTGTTAGAAGAAAGAACGATGGACAATCAAG
GCTAGGCAGCAAAAGGATACATGATACATGAGATGAAAAATGAAAAATGCTCACTTCTCA
AGAAGTTCATTTGAAGCTGGAGATTGGCTGCCATCAGGCAAAGCAATGTCATTATCATCT
TCATCGTCTGTTTCATCCTCATTTCCCAACAGCTTCTCAGCTAATCTGTCCTTGTACCTC
TCCGAAAGTAAATTAGTTGCCAATGAGCTGACAACAATCTCCTCCCTTCCAGACTCAAGC
TTCTCCAGAGTTGGTGATTCAATTTTGCTCCCAGAATCTTCCATATCAGGTTTCATCTTC
TGAATGGTTGCAGGGCTAGTTGGATTACTATCATTAGGCATTTGATTAAGTCCTTTCTCA
AGGTCAACTTGAACACTTTTCCCCTCAACCATTCTCAGCTCCAAGCACTACAATAATAAG
CTAATCATGTGTCAGACATCTTTCTTACAGTAATGTGTTCGAAATCAAATAGGGCACAAA
TGGGGCTTGCATACAAGTACATCGGTAAGCTGCAGGCAAAAAGTACAGCCTGGCACTAAG
AAAGCATAGCAAAATAGCCATATCAACCTCTTTAGTCATAGTATCTCCCAGGTTTACTAA
ATACTGGTCACATACCAATCTAGTCCTCATGGCTCCAAAACAAACCATCTTTTACAATCA
AAAATACAGAATTGCAGATGCAAAGTCTCTGCTTGTGTAAATATATCTGAAATGTAAACT
ACCACCAAATTATGCTAGCCCCAACTGCAGCAAGGATGGGAGAGGAGGGACTTGGGGTTT
GGTATAAGTTCTAACAGAAACTTCAGTTTTTTTTAATGAGCTTGGGTTTGGTTTTGCTGT
CAGCTTAACAGGGAACTCTGAAGAAGAGAGGATATGAAAGAAGAGAGATGAGACTATGGA
GTGACAGAGAACAGAGGCGGCGGCTGCGGAAAGAAATAAAAGGAGGGGAACCCTAAACTT
CCCCTTCTGTGGTCTGTGGGGTGAGCCAAACCTTGCACGCATTTTGGCAAGTAGTTCTAG
CCTGAGAGGTTCCAAACTCGTGGTTAACACCCACCAAATATGATAATTGCAGGTAGAAGT
TCTATTGGTGCCAAATTTGGGGATGGTTTACGAAGTTAACCACAGGACAGAAAATCTGTG
CATATCCACTACGAAATATCAGAGAAATACATCACCAGACGAACGACCAGAGCTGAATCA
AGAGAAAATAATAATATCAACAACTACCTGTCGCTCCCCCAAAGTAAGATTCAAAAGTTA
GACAGGGAAAATTAGCATAGCATTCCAATTTTAAAAGGAATCTGACAAATACCACAAACC
CTAGGCGCTTCTCCACGGCTCGTCACAGCATAGCCTGACCAGTGGCCGGACGAATCACCC
GCGCGACTCCGGCCACCACAAGGCATGGGCGCTCGGATGCAAAACACACCACCCCGCAGA
ACGCGAGAAACAGAAACGACGGGACACACGGAATCGACGAGACGAAGCACACATCGATAG
TGGCGGCACCAAATCGGCATGTGCGAGACCAAGGAGAGGGTGTAGATCTAGAGAAACGTA
CCGGCGAACCGAGGTCCGGAAGCCCGTGCGGTCTCGGATCTGGCGAGGTACGGCAATTCG
GGCGGGCTAGCTCGCCGTGGGAGCGGCCGGCGGCGGCGGGAGTTCGTCGTTTGGGGGTGG
GAAATTGGAGAAGAGAAGGGGGAGGCGGCCGAAAGAGACCAAATGCCACGGTGCGGTTCA
AAATGACCCGAGCCCAACGGTTACATTTCTGGCCTTCTTATACGCCAGAACGGACGCCTC
TTTTGGGCCGGTCGGCAACTAGGTCCAAGGACTTCCCCGCAACTGGGCCGGCACACCTCG
ACCCACGCCTGGTTCTTCCCCACGAATCTGGCCGGCTCCTGCTTCATGGAGCAGAGCAGA
GCGGCGACAATGGCCGAGCCTCCCGCCGCCGCCTGCCACACCGAGCTGGAGCTCGCGCGG
GCGCAGTGCCGCGCGCTTCACGACCGCCTCGCCGCGTCGCCGTCCCTTCCGCGCCACCCC
GCACTCCGCTCCCTCCTCCGCCTCGTCGCCGCCGAGCTGCGCTTCCTCGCCTCGTGTAAC
CACCCTGACCCCGCCAGGCCACTCTCCTCCAACCTGCCACACCTCGGGGCGCTCCACCTC
CTCCTCACCCACCCCGCTGTGCGCTCGCCATCTCGCCTCTCGCCCCTCCCGGGCGTGGAC
TTTGCCTGCGCCTTCCGCTCCCGCCCCGCGTGGGTGCTCCTCTCCGCGCGCAACCCTTCG
GGATTCCAGTGGGTCCCGTGCAAGGGCCTCAGCTCCCGCGTCGCGGCCGTGCTGGATGCC
GCGCGCTCCGCTCCGCCAGCAACCCGCCCGGAGAAGCTGCTGCTCGCCTTCTCCCGTGGC
GTCGGCGCGGACATCGTGTTGGGGCTCGCCGACGGGTTCGGGGCCGTCGAGGTCGACTTG
CTAGCGGAATTTGTTGTCGATTCCGAGGACGACAAGGAGGAGGACGGCTGGGTTAGCGTC
AGCTTCCGCCCCAATGAGGAGATGAGGGGCTTTAGGGCGTTCGAGATTGAAGTGGTGGAT
GGTGGCGGTGAAGTGTTGTTACCGCCACCGCACCGGGACGTGGAGGAGGGGATCGGTGAC
CAATTGGAGGGTTGGTTTGCTGACTTCTTAGGGAAGATGAGGATGAACTCCATGGAGATG
GTGAATCTAGACACGACGGCCCTCATTGCGATAGTATCAGGTATCAGCAATGGTGGGGTG
GGGAGGCTGATGGGTGCACCGGAGACGGAGACCAGGGCCAGGTTCAAGTGCAACTACAAG
TTCGTCATGGATCAGGTGCTTTGGAAATATTTCATATTCAACCTACAAGAGTGTGTTCAT
AAATAATCTAGTTCATCTAGTTAATTGACTTCCAGGTTTCTAATGTTGTTTGATAAATCT
TGACTGTAAATGTCGACAATATTTACATGTTGCCAAAGTTCTACAAAAAATGTTTATATA
GTCCACAAAACATGATAAATCAAAATTCAGAAGAACATATTATCCATTACCATCAGTGAA
ACCTGTTTTCTAGAAAACAAAGTAGAGGACTATGTTGCCAACAAGAGCTGTAAATCTTGT
GTCAAACTTAATGCCATGTATTGTACTCATACTTTTTGTAGGCGCAATCCGAGCTCCAAT
CTCCAATATTTGTTGAGCTGGGGAAAGCAGTGGACGGAAAGAAATGTATCATATGTGAAG
CGGTTAACTCAGAGTTCAACGAAATTGTTTCAATGTGTGGCGGGCCAGAGGAGAAAACCA
GAGCAAATCAATTACTGAAACAACTTATGTGAGTTTTCTTATACGACTTTGTTTCTATGA
GTTACGCAAGCATAAAATATTTATGTTTCCTAATTCTAATGGACCTTTGATTCAAATGTA
TCATACCCTAGTTTTTAATGTTATCTGGTCAAGTTTATGTAATGACCTACACATTTGCGA
TCAGAGTGATCAGACAACACTGATGGCCCTTTATCTGTCTAGTATCAACTCTAGTTTTCT
GTTTTGATTCCATAGCCTGTCTCGTTTTTGCAGCAGATTTCTTTCTATGAGTTAAGCAAG
CATAGAACCTTTATACTTCGTAATTCTAATGGGCCTTTGATTCAAACGTATCAACTCTAC
TTTTCAACGTTATCTGGTCAAGTTTATGTAACGGCCTACATTTGCGATCAGAGTGATCAG
ATAACACTAATGGCCCTTTATCTGTCTAGTATCAACTCTAGTTTTCAGTTTTTATTCCAT
AGCCTGCCTTTGTATTCACAGCAAATTTACTCGGTAGTTTCTTTCTGCTTCTAATTTTCT
AGTCATTTTTCCTTCTTATTTTAAAGGAAAAACTTGTAGTGCGGACTAAGAGAAAAAATT
CAGAGAGAGATATTTGCCATCAGAGCATACAGAAAGTTTGATCTGAGCTCTAATTCACTA
ATTTGTTATCAACTTCCAGTTTCATGACAAATTCACTTTTAGTCTTTGGTCTATTACAAT
TACTTAGTCAACAACAACAACAAAGCCGTGTTCAAAAAAAAAAAAAAAACTTTGTCCCAA
ACAAGTTGGTCTAGGCTAGAATTGAAACCCATAAGATCTCGAAACCAAGTCATGGACAAG
CTTCTCTTCCATCGATACTACCCCAACTCTATCATGTACATCATCATTCCGGACCGGATC
CTTTCTTGTGTGGCCATGTATCCATCTCAACATGCACATATGTGCTACATCTAACTGTTG
GAGATGTCGCCTTTTAGTTGGCCAACATTTAGTGCCATGCAACATCACAAGTTGAATCGC
AGTCCTGTAGAACCCGACTTTAAGCTTTTGTGGCACTCTCTTGTCACAGCAGAAGCTTGG
CGCCACTTCATCCATCCAACTTTGATTTGATGGCTCAAGTCTGTTAGGAAAGCAACTTAT
CTATATTGAAGGNNNNNNNNNNNNNNNNNTATTACACATGACTTGAGGTGCAAGGAAAGT
AAA