Map Locations of contig_41082 (7623 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_41082

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_56716 3 2172 bp AK369941 Available Available None





CDS Structure of MLOC_56716






Contig Sequence (7623 bp)

>contig_41082 7623 assembly3_WGSMorex_rbca.fasta
ATATGGATCCAAATCAGCCCCTTACGGAATAACACATAATCTAGGGTTTAAGATTCGGTC
ACTCTCGCAACCCATCATCTACTTATTAATCCCTAATGCTTTCCCTTAGGCCCAAATATG
GTGGTGTGTCATGTTGTTGATGTTGACATGACATCACTAAAGGAAGAGCAACATACACAT
CATAAAAATATCAAACGAATTACCAACTTTAGATGATTATTTATAACAAGATTTCTCGCA
TTTCCTCAAGAATTAAAGTAACTACTCACAAATCATCACCATGTTAAAAGAACAGTGGTG
TAATGAATATGCTTCAAGATCTGAAGATATAATCTTTCACCAATTAAACCAACTAGCATC
AACTACGAGACGTAATCAACACTACTAGCGACCCACAGGTAACAATCTGACATTTGGAGA
CAAAGATTAAATACAAGACATGAACAAGAGCTTGAGATGAGATGGTGCTGGTGAAGATGG
TGATGAAGATTGGTCCTCCCACAATGGAGGAAGCGTTGATGATGAAGATGTCCTTGATTT
CCTTTTCTCGGAGGGATGTTTCCCGGCGAAATCGCTCCGCCTGAGGGCAAAAATGTTCCC
GCCCTAGCTCCACCTTGAGACGGTCCCGCTTCTCCCGAAAGTAATCCTTTGATTTTTTTT
ATAGGGCAAATGGCCTAATACAGTACAAGATGGACATCAGAGGCCTGTCGGGGGCCCACG
GGCTCAGGGGCACACCCTGGGGGTAGGGCGCGAGCGCCCCTGAGCTTGTGGCCTACTGGT
GGGTCCCCTTCTGGTATTTCTTTTGCCAATAATTTTTATATGTTCCAAACAATTCTTCGT
AAATTTAGGTCATTTGGAGTTCTAGAGAATATCCAACTCTTCTATGATCTTTTCCGGTCC
AGAATAGCAGGTGCCAGCAATCTCCTTCTTTGTATGAATCTTGTAAAATAAAAGATAAAA
AGCATTAGGGTTGCATCCTAAAGTGGAATAAAGACTCAAAACATAATAAATATCAATAAA
AAAACATGATGCAATATGAACGTATCAACTCGTCCAAGCTTAGTCCTCGCTTGCCCTCAA
GCGAAAGCCAAACTCGATAATCATGACCGCATGTTTAGAGAGAGAGGTGTCGATAAAATT
AAATACGAACAAGACCGGCAAAGCCGGATATAGGCAAGAGCAAGACAGATCCGTCGCCAC
CATGTATCGGCGTCACCCGACAAGGAAGGAGCCCAACGCCCCGACATCCCTGCGTTGGCA
GTCAGCCCACCGTCACCCCAGCCGAGCGAGGCCACCCCTGGTGCCTCTACCATAAGCAAA
CCTCCCCTGTGCGGCCTTCGACGGGCAAGGGGCGCCACGATCGTGGCGCAGTAGCCGGCG
ACATCAACGGTGGCGAGGGGAAGCCGGCGAAGAGGAGACTTTGGCCGTGGCGGCTGGGCC
CCGGTGTCGCCTGGGGTGCGACACAGGGGAGAGAGATAATACACTGAGATCAATTCATTT
AGTTACAGTATTGGAGACAGGTTACTTTTGGCTAAATTTTCACACAAGAGATTTTGTTGT
TGTTGTTGTTGATTCGGCCGACAAGAAGAATTTTTTTTTTTTGCGGGTTATAACAAGTTG
CAGTTGACTAGTTGACTCGGAAGGTTTCAGCTTTATTGACTAAGCTAGAGCTTTGCCAAA
AACGAAAGACTGGCTGGAAGACCCAAGGACAACCAAACAAAGGCCAGCTAGAATTACTAG
GACTTGTTCCTGGCGTTTTGTCGTAATAATCTCTATGCATAAAGTTCTAGGGACGGGTCA
TTTCTAGCTGAACCATGAGACGAGAGCTAGATTTGTCTGGTTCAGCCGACTCTGATTTGT
AGTTGACTAGTTGACTTGGAAGGTTTCAAATTTCCAGCAAGACTTGGCTAGAGCTTTGCC
AAAAAAGAAAGACTGGCTAGAAGACCCCAAAAATAATCAAAGAAAGGCCAGCTAGACCGA
ATAACTAGTACCTGGTGTGGTCCGGTAAATAATCTATTTTATGCACTGTATATTAAGAGT
TTTTGCACACCGATCGAGGCACCGAGCGAGCCAGCGACCGCCGACCGGTATGGCCAGCTT
TTCGAGCGCCACCACATCCACCTGTTTTCTCCTCCTCCACCTCGTCATCATCTTCTTCCA
CCTTCCAACTCCTGCCGTCTCCTTGGCGTTCAACTGCTCCAGGTTCACCACAGAAGACCT
AAAGGACATGAAGTTCGAAGGCGACGCATCCTTCAACACATTGTATGGAAGTATCCCCAT
GAACACGAATACGTACCGTGTTGCCAGCCGGGTGTCGTACAGCGCTGCACCGCTGCAGCT
CTGGGACAAGATGACCGGCGAGGTGGCCAGCTTCACCACGCAGTTCCAGTTCCAGATCCA
TATCACCGGTGACGAGAGCAGCAAGGGGGGCATGGCCTTTTTCCTCGCCGGCTATCCGTC
TAGCCTGCCTGGCAATTGCACCCCCGACAGCCTCGGCCTCACTAACCAAAGCGCAGACGC
CGTGCCGTCCGGTGATAGCCGGTTCGTGTCGGTGAAGTTCGACAACTTCAACAACACAAT
AGTAGCTGACCCCGACACCAGCAGCTACGACCACATCGGCATCAATGTCAACTCCCTCAT
ATCGGTGAGTACACAGCCCCTGCCGAGCTTCACCCTCAACAACACCCAGACCGCCCAAAT
CGAGTACGACAATGTTTCCAGCATCTTAGCTGTGACATTATGGAGCGATGATGCAGATGG
CCAAGACCAACGGAGTTCCAGCCTTAGCTCCAAGGTTGACTTCAAGAGCGTACTACCGGA
GCAGGTCTCCATTGGCTTCTCCACGAACACGTTGTCGGGGATGGATATATTTCTAAACTC
TTGGTACTTCAACTCTTCATTGGAACCACAACAAACACCACCACCACCNNNNCCACCACC
ACCATCATCACCACCACAATCCCCACCAGGGCTAGGTTCTGGAGTTATAGTCGGAGCAGC
TGCCGGCGCAACAATGTTCCTCGTCCTCCTCTTTGCCGCTGCAGCGGCACTTGTAGTGCG
CCGCCGTCGTCATCAGAATATGATGGAGACGGAGGAGTACTACACAGACTCAGAAGGCGA
AGGCGAGCCGATGTCGGAGATCGAGATGGGGACGGGGCCAAGGCGGTTCCCATACCGCGA
GCTCATGGAAGCAACGAAGAACTTCGCCGCAGAGGAGAAGCTTGGGCAAGGCGGCTTTGG
CGCCGTATACCAAGGCTATTTGAGAGACCCGGCTGGGCTAGCCGTGGCCATCAAAAGGTT
GCAGTCTTCCATACAAGGAAAGAAGGAGTACAAATCCGAGGTCAAGGTGATAAGCAGGCT
GCGTCATCGGAACCTCGTGCAGCTCATCGGCTGGTGCCATGGCCATGATCAGGAGCTCCT
GCTGGTCTACGAGCTCATGCCCAACCGCAGCCTCGACATCCATCTCCACAGCAAGCAGGG
CACCTTCCTCACATGGCCAATGAGGTACGTACTTACCATCCATCTTGATAATAAGTTGTA
TGTGCTGCGGCGGTGCGATCATAGAATTATATATATGCATTGTATGTATATGTTGATGGT
TGCAAGTGCAACTGCAGGATGAAGATATTGTTGGAGCTTGGGTCTGCACTGCTCTACCTC
CATGAAGAGTGGGAGCAGTGCGTGTTGCACCGGGATATCAAGCCCAGCAACGTGATGCTC
GACGAGTCCTTTGGAGCCAAGCTAGGCGACTTTGGGCTCGCGAGGCTCGTTGACCACGCC
GCCGGGATGCAGACCATGACCGCAATCTCTGGAACTCCAGGCTACTTGGACCCTGAGTGC
GTGAACACCGGCAGGGCCAGCGCCGAGTCCGACGTGTACAGCTTCGGCGTGGTTCTACTG
GAGGTGGCATGCGGCAGGAGGCCAATGAGCGTAATCGCACCCAACCAACACCAGCAGAAG
AACGGCGGCGTCTTCCGGCTGGTCGAGTGGGCCTGGGGACTCTACGGCCGGGGAGCCATC
CTTGAGGCCATCGACGAGCGGCTGAACGGTGACTACGACGCTGCGGAGGTGGAGAGGGTG
ATGGTCATCGGGCTCTGGTGCGCGCATCCAAACCCGAGCGCGCGGCCGTCCATCAGGACA
GCCATGGCCACTCTCCAGCCCAAGGTCGACCAAGCCTACCAACTGCCGATGCTTCCTTCC
AAGATGCCGGTGCCGGTGTTTGAGCCGTTCGCCTTGGCCAATGCCGTTGGGATGTCATCG
TCGTCCTCCCACACCTTTGGGGTGTCGTCGTCGACGTGGTCCAGTATGCCACCGCACACC
TCTGGTACCGCATCCTCCGACGCTAGCACTTCAACAAACAGTTCAAAGACCTCTTCTTCG
CTACTCAAACATTAGTGCCAGTAGCAAATTTATGGGGTGCGTTTGATATGTTCTCGGAGT
GTTGTTGTAATAATGCCAGGATGGGACTAGCAGCTGGAATGGTTATCGGTCTGTTCATGT
GTTTGATATCCATAAGAATGGTTGGGTTTTTTAGTTGGCTTACCAAGCTTATCATAACCC
TCCCCTTTTTACGGTGTTGGGACCGGCTATGTTTATAGAAAAACAGAGGCAGAGTTTGTG
TTGCGATCAGTAATACACAATGAGTTGTGGCCGGATTGCGTTCGCCTCACACTGTAAACA
ACATCAAAGGAGCCCCATACAAATTGTACTTCAGGCTAACAGAGATTGCCAAGAAATGAA
AAGCAAGGAGCAGCGCGCCATTATGGATAGATAGCTAGCCCACCAACGTATTGACTCAAG
CAAGAAAAGGTGAATCTCATGTTTATAAAGAGGTTTATTCGTTTCGGCATAACCAAGAAC
ACAAACTCAATATACGGGTGAACTATCTAGATGAGAATTCTGCTGATTTTCTGACCTAAT
AACACTATAATTGGTGATGCAGAGCAGAGACAAAGCACTGAACCCTTATTTGATTTACTT
TCAGAAACCTAAGCCGTGCTACAAACAACCAACAGCCATTTAGTGGATAAAATTCTACTT
CCTCCATTCCTAAATATAATTCTTTTTAGACATTCCAACAGGGAATTACATACGGAGCAA
AATGAGTGAATCTACAATCCAAAATATATCTATATATATCCGTATGTAGTTCAATAATGG
AATCTCTAAAAAGACTTATATTTAGGAACGGAGGGAGGCACAGACCAACATTACCTAACC
TCGCCCGAAAGAAGAAGAAGAAGTAGCCAAGAAAGAAGCTCATACCAGCATTGCCAACGC
CAAAGCATTCCCAACGCTGCCCCTTGAACACCTGCCTTGATGATGTCTTGTTAAACTTCT
AAAGAGATTTGAACCCCTGCTTTGATGATGTCTTGTTAAACTTCTGAAGAGATTTGAACT
CCTGGCTTGATGATGTCTTGTTAAACTTCTGAAGAGATCTGAACCCTTGCTTTGATGATG
TCTTGTTAAACTTCTGAAGAGATTTGAACCCCTGCCTTGATGATGTCTTGTGTACACATA
CTAAGCCTCAACTTTGGAATTTCAGTGTTTAGATAACCACGATATCCACGGATTACACAA
AGGAGTTATTTGATTACTAACCCACATGGCGGATTATTGGTGTTAGTAGTACATGTTAGC
GATACGGTGCATATCCTAACCTCCTAACCATAAAGCCTAGTACGTCGTATAGATAAGTAC
AGATGTGTACGTGCGTTGTCGAGATTGTAACAACTCCTAATGTAGTCTTGATTATATAAA
CTGCAGCCTGCATCGTCTTTGGATGCACGGAACCAATCCATCTTCCACCAAATCTTTCAG
TACAGTTATAATAGCAAACATGAACAATAAGAAAGGCCAGGAACATTTGAAGTTTAACAT
GATAATCTGGATTATGAAGATAGATTATATAATCTGGTTTATAAAAATAATCTACGTGGG
CATGTTCGGAGGCCAGATTATATAAACTATAATCCAGGTTTTACATTGCATAATGACATG
TCCGTCCTCTGTTTTTTTTTTAAAAGAGGAGGGTGGCGGTGGTAGGAATGTAATTATCTT
TAAATTTACAAGGGTAATGGGTTATTAGCAATTCATAATTTGATTTTAGCTGAGGTAGAG
TAGATTATGAGTTTTTNNTAATCTGTTCATCTAGTTTTTATAATCTACACCATAAACTGT
CCTGTTTGAAGACGAAATAGATTATAAAAACTGAATTATATAATCTGGATGGTTCCAAAC
AGGGCAAGCCAGTTGAATGTTTTACCATGGCCTGCAAAATTGCAATTTATTTTCGAAAAT
ACACGGCACAAAAAGGTTGAATTTGAGGGCTTCCATTATTTATTCTCCTTTCTGAACTTT
GAAGTGCTTTGGAGCTAATATATAAAACTGGCGGTATGGAAGTAAAACTACTACTCCGTC
TGTAGCTTAATGGTGTACCTGTGGAGTGGCCGAGCTGCCTTTCAGAGTTCAGACGCGAGC
ACCCCACCGCCGGGGTCTTCCCCACCGCACTGCTCCTCCACGGAAAAGAACGGCGATGCC
TACTCTCGCTTGGCCCCCGTCGGCGGCGCTCTCTCCTCCTCTGGCCACTGCGAGATGCAT
CGCCCAGACCTGGAGCTGTCTCTGCAATCCTCCCGGCGGTGGCGCGACCGGCTGGGCTCG
CGGAAATCAGGCCGGAGACCGGCGGCTGTGTGATGGAGGCCGTCGGCAGCGGAATCTTCC
GGTGGGATTTGGGACAGGAAAATGTGGTGGATTTTTTTTAGGGGTGAAAAACTGCTTTAT
TGATCACTATTGCGGATTAGGGATAATATTAGTATCAAAGGTTCGAGTAGCCAAACATGG
CGTCCCTCCCCTAAGTGCAGAGCATATCTAGCTAAGTGATGAGCTTTCATGTTGGATAAT
CTTCCTTCATGGGTAAACGATATATGTTGAAAGTCACTCCTTCCATCAAATATTTCCTTC
ATAATAGAGCCGGTTATTCCTTCAGATCCAGAGTTGATTTCTTGAACAGCATTCAGACAA
CCAGAAGCCACTGCAACCTTTTGCAATAATAAGTCTCGTCCCAAAGATTGGGCTTCGCGG
CAAGCCAGGGTTTCCAAAATTGTAGGATCAGTTAACCCATGGAAGACGACGGCTGGTGAA
CCCAGGTAAGCTCCATGTTCGTCCCTGCAGACTGCACTGATCGCTCCTATGGGGGGGGGG
GGCTTGCAAACTGCACCGTCGACATTGATCTTTGTCCAACCCGTAGGGGGCTTGATCCAT
CGCCGAGTATTGGAGTGAACTGGCCTAGGGTTTGATCTCGATGTTGGCTTGTTCAGTTCC
AACTCTCCTATAAATCGGTTGACGAAGGATAGTGTAGCCCCTGGACTTTGATGCTCTCCT
TCATGGATCAGTTTGCGTCGAGCAAACCAGATCGCCCATAGTGTTACTGTGATCTTGGTC
ATCTCGGTCGCAGAAACTGATGATAGCATGGTGAATAGCCAAGACTTCGCGTCTGGTTCC
GCAGTCGCCAACATGTGCTCGACTAGCTCTGGATCATGTAGTACCCAGACGCAGCGAGCC
ATAGTGCATGTAAGCAGGGAGTGGATCCAAGAGTCCTCTGCCCCGCATATCGCACATGCC
CGG