Map Locations of contig_41080 (8571 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_41080

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_56715 1 1150 bp AK249381.1 Available Available None





CDS Structure of MLOC_56715






Contig Sequence (8571 bp)

>contig_41080 8571 assembly3_WGSMorex_rbca.fasta
GTTTCCTTAAGGAAAGGTTGTATGCGATCCTAAGAATACTAACAAGTATGNNNNNNNNNN
NNNTCCTTCTATGGACTGGTGCGAGCATCTCGAAGTTGGAATATACGCTTTTATGAGTTG
GTCAAAGTTTTTGGGTTTATACAAGGTTTGTGAGGAACATTCGCGGGAGAAAAATATAGT
AAAAGCTACTTACGTGTATATTACACGAGACAAGTCGGAATCAAACCATTGAACTAAGGG
AGAACAAACGTGATGACACAAAATATTATACCCTTCTTCTAGAGATATATTATACACACA
AAATTGATTATTTGAAAAGAAATTCTAGAAAAAAACACTACTTCTAGAAAAACTTCGAAA
ATAGAAAAATTAGGTGAAAAAAGGGAAAAAGTTTGTCAATTTTGAAAAAAGTTCATCAAG
TTTAAAGAAAGTTCATCGAATTTGAAAAAAAACATGAGAATTCAAGAAAAGTTCATTGGT
TTGAAAAAGTTCATCAAAATCCAGAAAAAGTTCATGAATTTTTATAAAATCATCAATTTG
AAAAAAGTTCACCGAATTTCAAACAAAAATTAGTGATTTGAAGAAAATGTTCACGTATTT
ACGAACAAATCATGGAACATAGAAGAAGAAAAAAAGAAAAAACAGAAAATCGAAAAAAAG
GAAAAGGAAAAATAGGAAAAAGAGAAAAGGAAAAAAAGGAAAAGGGGAAAAGGGAGGTAA
AGAAAAAGGAATTAAAAAGGAGAAAAGGTTAAAAGGTTGTCATATCCACGAGGGAGGTCA
TTTTGTTCGATTCCCAAACATTTTGGTTTTTCCCAAACTAAGACAATAAACGTTAGATGG
GCCGGCCCAATGCACGGAGATGCACGCGCCGGTTTGCAAAATTGTTGGTCGCGTGTGGGA
CCTCCTGTAGGTGCTGCACGCACCCGGTTTCCCTCCTCGCGCCTACGGTGCCTCGTGTTG
GGCTGGCCCATCAAACAGCTCTGGCGCCCGTGCAGACCTTGAAAAAGTTCATTGATTTTC
GAGAAATAAAGTACACTGATTTTGCAAAAACAGATTCTTCAAATGTGAAAAATGTTGACA
GATTTTAAAAATAATAAGAGTCAAATTTGAAAAATGTTTATCACATTTGAGAAAAGTGCA
TTGATTTTTATAAAAAGTTCAGTGATTTTCAAAAACGTTCACCAAATTTGAAAAAAAAAT
CTGTTTTCAAAAAAAGTTCATCAAATTAGAAAATAGTTCGTCAAAATTTAAAGAAGTTCA
TCGAATTTTAAAAAAGTTAATCCAAATTTTAAAAAATCATTGAATTAAAAAAGAGTTCAT
TAATTCTGGAAAGAAAACATCAAATTTGAAAATGTTTATCCAAATTTAAAAAAAGTTCAT
CAAACTTTAAAGAACAATCATTGAATTTGAAAAAACAGTTCATCAAATTTTCAAAAACGT
TCGTTCGGTATGAAAAGATTTCATCAATTTTGACAAAAGTTCGGCGAATGTGAAAAAAAT
CATCAATTTGAAGAAAAAGTTCACGAACTATAAAAATAATCATCGAGCAAGGAAAAAAAG
GAAAATCTAGAATGAAAAAAGAGAAACAAAAAACGAAAAACAAAAGCAAAAAACTATAAC
CAAAGAAGGAAATAAGAAAAGAGCAAAAGAAAATTTGGCATCAGTGCAGTGCCGCGGTGG
TTACTACGTGTTAACATGAGAGTTCGATTCCCCGCGGCGCTTATCCTGTTTTTTTCTTCA
AAACAGAAAGCTGAGATGGACCGGCCCAGCACGGGGCGCTGCACACGCGTTAGCAGAATT
GCACCGCGTATAGTACGGGACCTCCTACTAGACGCATTTTGCGTCCAATAGCGATGGCTT
CGCATAGGAGGGACGAAGCGACTCGGCCGTCGTTGCTAGCAAAGCGAATGGGCCGGCCAG
TTAAGTGGCCCGTGTTTTTTTCGCAATTTTTATTTATTTTCTTATTTTTGTTTTTTTTCT
CTTCTTTCTTATTTTCTTTTTTGTTTCTCTTTCTCTTTTTCCTAAAAGGTTACATTTGTT
TTTTGAATTTATGAAACTTAAGCAGCCTTTTTATTTACGAATAAATTTTATAAATGGAAA
TCTTTTTGACTTCTTGCATAATTTATAAGAACACAAATAAATTTGAAAACAGGAGCATTT
TAAAAATTTAGAACAATTATTTTTAGAAAAGAACATTTTTTGAAATTTGTAAATATTTTT
GAAATCGGGAATATTTTTTCAACTTATGTACACTTTTTGAAACACAAACAGTTTTTTAAA
AGGAAAAAATAGAAAATGAAGAACATTTTTCAAATGCCGAAACATTTTTTCAAATTTCAA
AACATTTTTTCAAATTCCGAAACATGTTTTCAAATCCGGAATATTTTCAAATTTCGGAAA
ATTGTTTTGAAAAATCCAAAACATGTTTGTAAAAATTCGAGAACATTTTTTCTAATTCCG
GAACATTTTTTCAAATTTCGAAACATTTTTCCAAAATTGCAGAACAATTTTTCAAATTTC
AAAACATTATTTCCAATTCCGAAATATTTTTTCAAGTTCCAGAACATTTTTTGAAATTCC
GGAACATTTCTTCAAATTCTGAAACATTTTTTAAAAATCCAGAACATTTTTGAAACAAAA
AAGAAAAAAGAAAACAAAAAAAGGAAAAAAACCAGTTCAGGTAATCTTCTATAAAGTCTC
AAAATCGGGAAAAGAACGGCTGGAAAAGTTAGAAGGTTCGCAAAACCCACAACGCACGGC
AAATAGGGTTTTTCCTAGAGTACCTCCTCGTAAACTCCCTCCTTGCAATGAATTTAGGTT
GTTAATTTTTTACAATATGTATGCAATGCAGTGCGGCTGCTGACGGAGATATAGTGCCCT
ATTTTATGCTGTTGGAGATGAACATTTTTTCCCAAAATATCACCTTTTGGCACGATAAAA
TTTACTCTGGGAAATTCTCTATGTTAGAATAGGGCTGCTTCAGAAAATGCTCTGCGACAG
AATTATTGCGTAGTTCATCAATCCACAACATCAAACTAGTGGAAATCAAAAGAAATGCAG
TGGGGACCATGCACATGCAAAGACAGAGGGCTACTGGGACGGTAATTGCGTTCAGCTTTG
GAGCCCCGTTGATGCAAGAGCTATAATCAGCCGGGTGATTTGAAAAAAAAATCCTCAATA
AATATACTCAAACAGCAGATTCTATGACTAAAATGTACCGTTTGGACAACCAAACAACAA
CAATCCGCAAACCAAGAGAGCTAGGATGTGCAGACGATTAGGATCTTTTGTATGAGCTTT
TGTTCCCTTGTACACCCAACAGTCACGCAACTTGCTGGTACGGAAAAGCTAACCCAGATA
AACGGACTCTTGCTATTACCCTCGAATGGAAGGAGAAAAATGATCCCTTTCTCCCTTGGG
ATGTCGATTTCTCGGAAGATCTCAGTGGTAGCCCCAACCTCTTCCTCGGCCTCCTCTGCC
TCGCCCTCTTCCACTGCCTCTACCACCACCACCACCACGGGGTAACCCCTCAAAAGCTCT
GTTCACGAGCTGATTGTGCATTCCTCCATCTCCTCGCCCCTTCTTGTTTAAAGGGGCATT
CCCATTACTAACAGGTTGGGTCCTCTTCCCTCTGAAACATCAGCAAACTAGAATTGACTA
AAAGGAAAAGCAAATTAATCTGAATAAAATTCAACATTTGATAGTGGACATCTAACCCTG
CTGTTGCAGCTGCTGGTTTCTTTGGTTGTTCCATCCATGATAGAGTAACTTTCTTATCAC
CAATGAATAACGGAGATTTCCCATGCAATGGCTAAAATAAAGAAACAAATCGTCTCCTTT
AAATTTAAATGTGAGCAAATAATAGATCATACTAGTTCCTTCTGAAGCACACAAACAAAG
AATCAACAGTACACAAGAGCAATATGCTCGGTGACTTCATAGCAAATTTTACGAAGCTAG
TTACAGTTGTGCAATTGCTTTTTAGGCCTCGAACGCCAAGCAAGAAATTCCAAAATGGCT
TTATATTTTGAAGCTCGAATAAGCTAATGTGCCATCTTAAGCATATATAGGCTCTGGCGC
ATGGATAAAGGATTTTATGTCTAAGGGGCTTAGAAAAATAATACAATGTCGTTGTTGTTT
GGCTATGGTTTCTTTAATCTTCAGGGAAAATTATGTATTCTGTACCAAACTATAAGACGT
TTTTGTAGGCTAGTTTAGCCTACAAAGATGTCTTGTATTTTCATAAGGAGGTAATACTAT
TTATTACCCACCCTCAGATTTTAGAATTGCATCGTTACATTTAGTACTACATTACTAAGT
CAACAGAGTGAGTAAAAACTTGCTCAATATAAACAGGATTGCAGCAAATTGATGTTATTG
GGTCAGCCAGACCGGTGCACATAACAGCAGCAAATGCCATGTCAGTGCAAACAGAGTTAG
TGATGCAGGATAACGAAGAACTAGTTACAAAGAATAAATGTTAGCCTGCAATCCTGCAAA
AATCTTCGTAAGTGAAACAAAGAAATCACCTGCGACATTGCCAATATATTATTATAGGAC
CGCATTGTCATCGTCGATTTTTGCTGATCCAATTTCTGCAAAAGATCACATCGCTATCAT
TGGCACTTTAGCAGGAACTGTAGACGACACATGCGATAAATCTGTGTGCTGAAAATATTT
AGGACAAATTGTGCAGATTATAACAGTACAAGGTTCCTGCAGAAATATTAGGACGCCGTA
ATAATGGTCGTATAACATGGCACAAACGGCAGGGTCTACGCCAAGGCAACTCCATGTCGC
CGCAGCTCTTCGTGCTCGCCGTGGACACCCTGGGAAGACTCATCAAGCCCGCGCTCGAGC
TGGGTATTATGGCCCAGTTACATCCCAGAAGGACTATCCCCGCGGTGTCTCTGTACACGG
ATGACGTGGTGCTTTTCTGCCATTGCAAGACCAGCGACATCATGGCTGTCAAAGAGATCC
TGGCGCTCTTCAGCCACGCCTCCGGCCTACGCGTTAACTACGCCAAGAGCTCTGCCTCAC
TGCTGCATTGCGACCTGAACGAGGCGACTGAAGCACTCACGCACTTGGGCTGCCACATCG
TGGAGTTGCCGATCACGTACCTTGGTATCCCCCTCACGATCAGGCGCCCTACTGCAGCCC
AGCTGCAGCCACTCGTTGATGGGATCGCCCGCCTAGAAGGCTGACTTGATGACAAAGCCT
GGGCGCCTGGCTCTGGTGAAATCTGTCCTAGGTGCCATCCCTGTCCATCAACTCCTCGCC
TTCGCGTCGCCGAAGAAGACCCTTAAGCAAATCGAGAATATCCAGCATGGCTTCCTTTGG
GCTGAGCGCGCAACCGCCAACGGTGGCCACTGCCATGTCAACTTGGCCTCGTGTCTGCCG
CCCTACCTCCATCGGCAGCCTTGGGGTCCAAGACCTCGAGCGCACTGGCCTAGCGTTGCG
GCTCCGATGGCTCTGGTACTCGCGCACCAACCACGACCGGGCTTGGCACGGCCTAGACCT
GCAATTCTCGCTCGAGGAAAAAGCGCTCTTCTTCGCCTCCACCATGATGATCATTGGGAG
CGGCTCCTCAGCGCTCTTTTGGGAGGACCGCTGGATCAATGGGCATCTCTGAGATCGCCC
TGAGCTTTACAGCTGCATTCCCAAGCGTCGACGCAAGCTCCGGACCGTCGCCGAAGGTCT
ACAGGGACACAGCTGGGCAGGCGACATCCAAGGGATAGTGGGCATCAACGAGATCGGCCA
ATACATTCAGGTCTGGCAGGCTATCGAACATTTCCCCCTCTCAGATGCTCCTGACCAGAT
GGTGTGGAAATGGACGACATCCGGTACCTACACGGCCCGCTCCTGCTACCTCGCCACATT
TCAAGGCTCCACTACCTGCTACGCCTGGAAGCTCATTTGGAAGAGTCGGGCACCGCCGCG
GGTAAAATTCTTCCATTGGTTAGCTAACTTGGATAGGTGTTGGACCGTTGATCGCCTCGC
TAGGCGGGGCCTCCAGCACCAGGTACGATGCCCATTATGTGACCAAGCTCCCGAGACGAT
GCGCCACCTACTCTTGGAATGCCCCTTCGCCAAGCAGACTTGGCATGAGATCCTTGCGTG
GCTCAGGATGACCACCGCAGGACCAAGCGACGAAGGCTCGCTCATGGATTGGTGGCTGCA
CACGCCAAGCAAAGCACACCTACAACGACGCGGAAAGGCCTTGCCTCCATCGCCCTCCTA
ACGCCGTGGATGATTTGGAAGATGCGCAACGAGTGCACATTCGACGGTGCCCAACCCCTC
GTACATGTCCTGGTCTCTAAGATCAAGGACGAAGCCAAACAATGGGCACGCGCTGGTGCT
CATGGCCTCAGAGTCATCTTGCCTACCACCTGGGATGTACATTAGATTCACATTCATGTC
CCTTCCTGAACTTGCTCTCCTAGGAGGGTTGTAACCAAACTCTATCTGTTCAATGCAACG
AAACGCAAAATCTCTTGCGTTTTCTCAAAAAAAAAATGGCACCAACTAGAGAACATTCCA
ATGGAACTAGTAAACCCAAGCATCTAAACTCACGATTTTAGTTTTCTCTTCTTCTGTCTT
TGCTGAAGATATTGCTTTGTTGAAATCTGCCATTCCCTGGGTTAGTCTCTTCGAGGCTGC
TCGAACCGTGTCTTCCGTTCCAGTTAGCCTGTGCATTTGTAGCAATCAGAAACACGCTAA
CATGACAGAAATCATGCTAGAGGAACAAATTTGTGCAAGATAACAATTGAACACATAAGC
GAGGTGACAAAGCCAACTATGAAAGTAGACAGAACATTTATTCTACGATGCTAAAAGATT
CTAATGTTTGGGTCTCAAAAGCTTAATGGGGAATCTGGGCATCATCATGTGACTGATCCA
CACGAAAAGAAACTATATACTTCTATATATACCATATGAAAATATATTTCATGATGAATC
TAATGGTATTGATCTGGTATTGTAAATGTCGATACAAAAAATCTATATACTTGGTCAAAG
TTTACAAATTTTGACTTGACCAAATTTTATATGCACTATTTGGCAAGAAGGGAGTGCTTA
ATAGTGGACATCTCTTAAAGGAAATCAAAATCAGCTAAAGTGTTCTACGTACTAGACTTT
ATTTGGGCTTGCTTAAATTAGACTACAACAGAACCACAATGTAACTTCCAACTTGAAGGC
TTCTACTCATGGGGCATATTTATAAGAGTTTAACTCAGTTTATAGTAAAGAAGTGATCCG
CAAATGAAACAATGCCAAACAATTTAATCAAGCTGAGTTTAGGACATAAGAATGACATGT
GAGGAGATGTTGAGACATGGAAATGAAGCATGTGAATATGATGGTAACTTACTAGTAGAC
TTCTTGCTTGAGAACAGATTTTTAAAGAATGCAGACACAAATAAAATAAATCATCAACAT
CAGTTGATTATTGTGCCATATATATAGCAAGGTACCTCTCGATAAAATCTTTGTAATGTT
CTGAGAAATCCTCTCCAAGTCTATCTGATGGCTGTCCAGTAACGATCTTGTAACCACAGA
GACTGTTTGTAGTGTTTGGTGTCTACATTACACATTAGGTCAGCACAAGGTCATGAAGAA
ACTGACATGATTCATAGTAGAAACATTTCATTTATCTAACCTTATGGGCCAAATGGTGAA
AAGTGTATAGCAAGCACTCGACATAACTGTGATTAATATCATCTACCTTCTTCCCAGGCA
TATACTTCTGCAAAACAACAATTGAGATCAACATAGAAATTTTAAACATGTATTCACTGT
AAATGAGAAACTCATCAATATCTTTGAGCATACAAAATAAACCTTGCAGATTGGGCTTTA
GAAACATTAGTGTAAATAAGAAACGTATAAACCTTGAGCAATTGAACAACGGATGGAAGC
AGCTGGCGTGAATCTTGTGCTGCAGCATATGGTGAGCTAGCAGCAACTGTCTTGAGTAAA
TCCAGTTTCTTCTCCTCGGGAATCTAAAAATGGTAAAAACAAACACTTGATGCTGAAACA
CGCAGGAGCAGAGATAGTTTTGAAAGGAAAAACACTCCAGATGATGCAGGATACTGAAGG
ACATCATAACAAAGCAACGACAAAAAATCATAACTAGAAGCTTGAACAGCACTGTAAAAT
TCGCCTTGTGAGTTTCGCACGGCCCTTCTTAAGAGATTAAGAGCATCTCCAGCCGCGCCC
CCAACAGGCTCCCCAGACCCCATTTTTATCACCGGCTCTAAAAAAATGTCCCAATCGCGC
CCCCAGGACCTCATTTTCCGCCGGTTTGGGCCGAAATTGGCGTCGGCGGACCCAGGCCAA
ACCCAGCGCGCCGGAGGAAAGAAATTTGGCACGAAAACAAACCACACCAAATTCCTCCCG
CGTGGACCCGCCGAATCAGCAAGACTGGGCATCGCCTTCGTCCTCCTCATCGCCTTGGCT
CCGGTGCCGGTTCAATGCGCCAGATTCCAAGGTCTGGCGACGCAGTGATGGCAAGCCACC
GTGCGTCCCGCCCTTTCCTGCCATGCGTGCACACCGCTCCCGCCCCTTCCC