morexGenes - Barley RNA-seq Database

Contig contig_41079
Source Contig contig_41079
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_41079 (9660 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_41079

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_56713	5	3923 bp	MLOC_56713.2	Available	Available	LOC_Os03g17310.1, FRAME:+1, EVALUE:0.0, 13103.m02070 protein calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed
MLOC_56714	1	2811 bp	AK365096	Not available	Available	None
CDS Structure of MLOC_56713

CDS Structure of MLOC_56714

Contig Sequence (9660 bp)

>contig_41079 9660 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGAGCGGGCTGGCCCGTGGCTGGATAAGTCACAGTGTGGCGCCTAA
GCGTTCGGCGCTACCCTGCAGAGTGTGCAACACGTGAGGCTTAGGCGTCGCACTGCCTGA
GGGTGGGGCTAGCCGTGTCAGCGTGGCCGGACGTGTGACGCTGACGTCTTAAACGTCACA
CAGTGTAGTGTGGCGCCTAAGTGTCGGACGCCACATGAAAGAGTGAAAGGGTCAGTTGAC
TGATTTTTTAGTTTTTTAGCCGAGGGTCAATTTTTTCAATTTTGTCGCCTGCTGCACCAG
CACAGTCGTGTCACGTCCATGCGTCCGATTCGATCCCGTGTGCAACCCGAGGCGACCGCA
TGTGCGCTTCTGGCTGTCTCCCACGGACGGCGAGCCGTGCCCCCACGGTACGGGACATGG
CTCCCTTCGTACTGTACTGTACCCGGCGTACCGCAGCTACGCGGAAGCTGCGAAATCCGC
GATCCGCGGATGTGCGGCCTCCGTTTCCCCGTAAAATATTTATCCAGATCTCGCACCACC
CCTGCCGAAAAGGAATCGACGACAGCGAGGAGGTCACCTGTACTGTACCATATACAAACT
CCACTACACTACCTACCACTGGTTCTTGAAAAAGAATTACACTACCCACCACTTGACACC
CTCTGCGGTCGCTCCAGAAACAACCGTGGCACGCCGCGTGCCTGACCCGACCTGACCCGA
CCCTGACCCCGATCTCTGCGCCCGTACGTAGCAGGTTCGGCTGATTCCCCGCGCGTGCAC
AGTGCACTGCGATGCATGGCAGCGCACGGCACGCCCACGGAACGTGCAGGGCGCAGCCGA
AGCTGCTGCGTGTGCGCGCGCGACTGCCCGTGCCTCCCCCATCGCCTGGTAGCTTCGAGA
ATTCCTCTTTGGCAGCCGGGGAGGGAAACCCGATAAAATCAGGAGGCGCGGGGCACACGT
GGCGTGCCTAGATTGGTCGGGGGTGCGTCATTAGCGGCTGCGCGGGCGCTGGTTGGCCCG
ACTGACGTCACGACACCACTCGCCGGAAAGATTCCTCGCCTCCCGATCCGCGCAAAGCGG
TCCGCCCGCCACAAAAGCAGCACGTCCTTCTCACTGCGTGTGGGTCAAGGCTACAGGCGG
CCCCACGCTTCAGTGGCACATACCGTTGGGGGAGCACACGCGGCAGCACGGCGCGTCGCC
CGTGACGTGGCCTCCGCTCCGGGTCAAGCAAGGCATCTACGTATCCATCAAAGAACCCCA
TACCTTACCGGTTAATTAATTAATCAATCCGCCCATCTCATCATCGAAAGTACTAGCCCG
CAACGATAGCCAGCCCTCTCGCTCGCTGACGAGGGCGTCCCACCTCACACGCGACCCCAG
CTGCAGAGAAACGCAAGTCCAAGGTGACGAATTGGCCCCTGTTTAAACGGAGAATAAACT
ATTTCCTCCCCGTCGCGATCGATTTGGAGTGCTAGTAGTAAGAAAATAGTTTACGCCATA
AAGAAAAGCGGAAAAACAAAGGCAAAAGCCCCCCGTCCTTCCCCTTGCCTGCTTTCGAAT
CCACACCACTGCACCACCAATCGCCCTCTTCTCCCACCCAGTCCCCCGCTCCCCTCCCCT
CCCCTCCACGCCGCCTCCATCCCCTTCTAGGGTTAAGGGTTCCATGCGATCTCGCCGCCC
CGACGGACGGGAACCCTAAGCGCGTCTCCTCTCCGGTCGAATCTCGAGCCGTCGCCGCGA
AACAAATGGGCAAGGGCGGGCAGGACGAGGCCGTTCGGCCCGATGGATCCGGTTCCCCCG
GGCCCGACCCCGACGTGCCCGTCTTCCCGTTCTGGGCGCGCACCCCGAGCGAGTGCCTGG
CGGAGCTCGGCGTTTCGGCTGACCGCGGCCTCAGCTCCGACGACGCGGCGGCGCGGCTGC
ACAAGTACGGGCCCAACGAGCTGGAGCGCCACGCGCCGCCGTCCGTGTGGAAGCTGGTGC
TCGAGCAGTTCAACGACACGCTCGTGCGCATCCTCCTCGCCGCGGCCGTGGTCTCCTTCG
TGCTCGCGCTCTACGACGGCGCCGAGGGCGGCGAGGTCAGGGCCACCGCCTTCGTCGAGC
CGCTCGTCATCTTCCTCATCCTCATCGTCAACGCCGTCGTCGGGGTCTGGCAGGAGAGCA
ACGCCGAGAAGGCGCTCGAGGCGCTCAAGGAGATCCAGTCCGAGCACGCCACCGTCAAGC
GCGACGGCCGCTGGAAGCATGGGCTGCCCGCGCGCGACCTCGTCATCGGAGACATCGTCG
AGCTCCGCGTCGGCGACAAGGTCCCCGCGGACATGCGTGTGCTCCAGCTTATCAGCTCTA
CCCTTCGTGTTGAGCAGGGATCCCTCACTGGCGAGACCTCTTCGGTTAACAAGACCAGCC
ACAAGATTCATCTCGAGGACACAGATATCCAGGGGAAGGAGTGCATGGTCTTTGCTGGCA
CCACCATTGTCAACGGCAGTGCCGTCTGTGTCGTGACGGGAACTGGCATGTCCACTGAAA
TAGGCAAGATCCATTCGCAGATCCAGGAGGCATCGCAGGAGGAGGATGACACACCGCTGA
AAAAGAAGCTCAATGAGTTTGGTGAGGCGCTCACTGCCATTATTGGAGTGATATGCATCT
TGGTTTGGCTCATTAACGTGAAGTATTTCCTCACCTGGGAGTATGTGGATGGGTGGCCAA
CGAATTTTAAGTTCTCGTTCGAGAAGTGCACATATTACTTTGAGATTGCAGTGGCACTGG
CTGTTGCTGCAATTCCAGAGGGCCTGCCTGCTGTCATCACCACATGCTTGGCACTAGGAA
CCAGGAAGATGGCTCAGAAGAATGCACTTGTCAGAAAGTTACCAAGTGTTGAGACATTAG
GTTGCACAACAGTGATTTGCTCTGATAAGACAGGAACTCTGACCACCAACCAGATGTCAG
CGGTGAGGCTTGTGGCAATTGGGAGGTGGCCCGATACACTTAGGAACTTTAAGGTTGATG
GTACCACTTATGATCCAAGTGATGGCAAGATACATGACTGGCCAACTTTGAACATGGATG
ATAACCTCCAGATGATCGCGAAGATAGCTGCACTCTGCAATGATGCAAGTATTGCACACT
CTGAGCATCAGTATGTTGCTACTGGGATGCCCACAGAGGCTGCATTAAAGGTATGGTTTG
TTAAGGAACCAAGATATAAACATAGTACATATCTTGCATGTTGCTTCTACTTGCCAATTC
TATACTCTATTTGAATGCTTTTCAACATGACATTGTCTCCATTTCATTAACTTACAGTAA
TTTTATCACTTGTACTGTTGAGTGATTGTATTATGCACATGCCAGGTTTTGGTCGAGAAA
ATGGGGCTCCCTGGTGGATATACTCCATCACTGGATTCATCTGATTTGCTAAGTATGTTG
ATTTCTTTTGTGAACAATACTATATAATCTGATTGCATTAATAACTTACTATGTAGAAAG
ATCTGACATAATTCTTGTATCTTTGTTGTTTCAAGGGTGCTGTCAATGGTGGAACAACGA
TGCCAAAAGAGTAGGGACTCTGGAATTTGACCGTACTAGAAAATCAATGGGAGTTATTGT
GAAAAAAGCTGAGACTGGAAAGAATTTGTTGCTTGTGAAGGTATTTAGAATAATTCATAT
CGTTTAGTTCTGTTGCGGGTTAGCATATGTTCCACTTCCCTGTTTCAAGTTGTGTAGTGC
ATATAAATATTCTGTTTGGAATTTGGGTTACTCACATTATATTCCTCATGCTGGAAAAAT
ATACTGTGTATTGTCATTGTCCATCGAACCATTTTTTCCACCTCCCTTTTCTTTTTGAAG
CTAGGGCTTGTCATATCATCCAATGTTAATTCTCTTTATCTAGTTATCAATGCGTATTTA
CCTTCCTTGAGTCAGTTGGTTATAGATTCAGGTACAATGTGGCATTTTGTTTCTTGTTTG
CTTCTCTGTGAGTAGCAAGGATCATGCATTTATGCCATATTGCTGCTTCCAATGTTTTTG
GCCATGCCATTTTTTCTCCCATGGGTATTTATGGTAAAAGTGTACTCTTGCAGGGGGCAG
TAGAAAATCTGCTAGAGAGAAGTGCCTATATTCAGTTACTTGATGGATCCGTCGTGCTCT
TGGATGAGGGTGCCAAGGCACTCGTATTGTCAACACTTAGGGAAATGTCTGGCAGTGCGT
TGCGCTGTTTGGGCTTTGCATACAAGGAAGATCTGGCAGATTTTGCAACATATGATGGAG
AAGAACATCCCGCTCACAAATATCTACTTGATCCTGCATACTACTCTTCCATTGAGAGTA
ATCTGATATTCTGTGGTTTTGTTGGTCTAAGGGTGAGACCTTCTCCATGGAAATTCTGTA
AACAAATATGCAGTCCTAAGTTGACAAACACATGTATCCTTTAACATCATTATTACTATA
CTACTGCAGGACCCTCCACGAGAAGAAGTCCACAAAGCAATTGAAGATTGCAGGGCTGCT
GGTATACGTGTTATGGTGATAACAGGTGATAACAAAGAAACAGCAGAGGCAATATGCCGT
GAGATTGGGGTTTTTGGCCCCAGTGAAAATATTAGCTCCAAGAGCTTTGCAGGGAAGGAA
TTTATGGCTCTTCCTGATAAGAAGAAGCTGTTGAGGCAAACAGGTGGCCTTCTCTTCTCA
AGGGCAGAGCCAAAACATAAGCAAGAAATTGTTAGGCTGCTCAAAGAAGATGGTGAAGTC
GTTGCAATGACTGGTGATGGAGTGAATGATGCACCGGCTCTGAAGTTAGCTGATATTGGA
ATTGCGATGGGTATTACGGGGACTGAGGTTTGCCTTCTTTCTCTTTTTTAATCTGTTTTT
TCATTCTGGTTCTATTTTTAAGACCCATTCCTAATTCGTGTAGTTGGTCGTTAGCTTACT
TCCATAGAAGAATGTCACCTGCTGACATCTCAAGGGTACTGTTTTAGGCTGCACCTAATC
ACCTTACGCATGCAATTGAATCCATTTTGTTAGCCTCTGATTGTCTCCTGTAACTTAAAG
TGCATCTACTTGCAATTATTTTTAATATCGTTATTATTTAGCATTTGCTATAATCGTTTT
ATGTAATGTTTGCTGCACCCTCATAATGATCTGTTATTCACCAACCCCTATACAGCTACT
TTCCTGCTGAATAGTTGATGCTGGTAACACTCAAGATACACTAAATAAGTCTGTGATAAT
GATATGATTCCTATTGCCTTTATTATTTACCTTTTTGTTTTGCTTGATAATTACTACCTG
ATGTTTTGATTTAATGGTGTTGCCTGTCATGCCTCTATTGTATCCATGGTGTGAAATGTT
TTACTCATGATGGCCTTCTGTGACCAAATAATGCATGATATGTTTCGTAACATGGTGTGG
ATAAAATCCTGTACTTAATGAAATGTAAAAATCGACACGTACGCATGCATGTGAGCATGA
GCAGAGACGAAACAATAAAGATGGCACAATGGCGAAAAATCTGTTTCACTTGTCTGTGTT
GTCAAAATCTTGGAAGTTGGAACACATTTTTCTCAGTTCCTACATGCGTGTTTTTGTTAG
CTGTTCTCACATGTGTAGAGCGGACTTGTGACCTCGTTCCTTTTTCCTTGTGATGTGTTA
GGTTGCAAAAGAAGCTTCAGATATGGTGCTTGCAGATGATAACTTCAGTACAATTGTCTC
AGCTGTTGGTGAAGGAAGGTCTATTTACAACAACATGAAGGCTTTTATAAGGTACATCTT
TTTTGTTAGCTTGTTTTAACCATTTCGTTTGATAATTAATTGAAACATAAAATCAAATGC
AACAAGTTCATGTGATCTATGTGGCACTGCAGATATATGATATCTTCGAACATTGGAGAA
GTTGCCTCCATATTCCTCACGTCGGCTTTAGGCATCCCAGAAGGCCTCATTCCTGTGCAA
CTTCTGTGGGTCAATCTTGTTACGGATGGCCCTCCTGCAACAGCATTAGGATTCAATCCA
CCAGATAAGGATATCATGAAGAAACCTCCTAGAAGAAGTGATGATTCATTGATCACTCCT
TGGATCCTGTTCCGCTACATGGTATGTTTTCCTGTATATTATGCACTTCCTGAAGTATCC
TCTTTCTAAATCAATTGCTTTGAAACCCTTACTGTGAATAGTTAATCTACTGTATTCCAT
GTAGCTTTTCGGCAATAGCAATTGAGGTATATACACTTTGAACACCTTATAAAGAGTTGG
CACTTCCACAAAAATATATATTTATAGTATTTATATCCAGACATTAAAACGAGAGTTTAT
TCTTAATTAAGTCAATTGGGAGATGCTTCTCTAGAGTGTCCCATATATGTTTTGTATCTT
CCATACGAAAACTGTCAATTTTCGTAAGATCTTCAGTCTTACTCAAAAGATCCAGTAGTA
ATCAAGTTGTATCCACCGAGGACTTGCGAAAATAAAATTTCCCATCATATAGTATCCACA
TGATGTGGTCTTTTGGCACATCATTATGGCTTTTTGGAAGTTACTCCCTCCGTTCCTAAA
TANNNGTCTTTTTAGAGATTTCACTAGAAGGCTACATACGGAGCAAAATGAGTGAATCTA
CACTTTAAATTATATCTATATACATCCGTATGTAGTTTTCTAGTGAAACCTCTAAAAAGA
NNTATATTTAGGAACGGAGGTAGTACTTGTTATGAGGATGATAATGCTCACCACTATGAT
AAATTAAAATTGTTCTTAATTGAACGGGGTTCTGAATTCTAGCTTCGAAGATAACATTTG
AATTCTTTTCAAGCAATGGCTTGTACATGTATGGGGCCTCCCATTGTTGGTCTAAGTGAT
GTACCTGTGAAAAAAGAATACATGTGAACGTATATGCAGCTACGCCTGCAATATCTCAAT
TCAGGTTAACAAATAAGGAGTGTAAGTTAGACAACAGCATGAATCATGAATAACCAATTT
AACAGCCTTCTGGCCTTATTGATTTGTGTACTTGCATAGAATATTAATTTATGAATTGAT
GCAGTTGTACTTATGTTTGAAATTTCTGAACATCATATGTATAGGTTATTGGGCTGTATG
TTGGGATTGCAACAGTGGGGATCTTTATCATCTGGTACACTCATGGCTCTTTCCTGGGAA
TTGATCTGGCTAGTGATGGTCACACTCTTGTTTCATACTCCCAGCTCTCAAACTGGGGCC
AGTGCCCCTCATGGGAGGGTTTCAATGTGTCATCATTCACAGCAGGGGCAAGGACATTCA
ACTTTGATGAAAACCCTTGTGATTACTTCCAGGGTGGCAAAATAAAAGCGACAACCCTCT
CCCTGTCCGTCTTGGTGTCCATTGAGATGTTCAACTCACTGAATGCCCTGTCTGAAGATG
GCAGCCTTCTGAGCATGCCTCCATGGGTGAACCCCTGGCTTCTTCTGGCAATGTCGGTGT
CTTTTGGGCTTCATTTTTTGATCCTCTACGTGCCCTTCCTTACCCAAATCTTCGGGATTG
TGCCCCTCAGTTTCAACGAATGGCTTTTGGTGGTAGCAGTGGCCTTCCCAGTGGTCCTCA
TCGATGAGGTTCTTAAGTTTGTTGGGCGGTGCTTGACAGCTCGTGCAAGAAAACAATTAG
GAAAGCGGAAGGAAGAGTAGAAGGTAGTGATTGAGTAATAGATTGCAGGCTTGCCACGGG
GGAGTAGACGTCTGGTGATACCCCATTATTTTTCTTGAGATCTGAGGGCTCTGCTCTTTG
TTGAGCATGAAGGAAGTTAGGGTACTCTATAGAACTCATAATCATGCCTCGAGTTTAACA
GACTCATTTATTCATTTGTAACAAAAAATGGTGTTATGAATGTGCTGGAGATACAGCATG
GTTTCTTGCCCACTTACTGCAGTAACCTTGCACTTATATCCATGATTTTTTCTGCTCTGA
ATGCAATGGCGTGACGTAAGTCTGTTCATATAGCAAGTCTGTTCCTTGTTCAGATAGCAA
GTCTGTTCATATATCCCTGGTTTATATATTTTTGTCTCCTCCTTGTTCAGATAGCAAGTC
TGTTCATATTAGCTTTGGTCTCTGTGCCGATCATATAGAAGGTTACTTTTGTGAAATCAC
GGTACACTTATTTGTACAATACTCCATCACTATTTGATATAGCTATCTTCTACATGAAAG
AATTTACATCGTTTGTCATGTATACATCTATAGAGACAAAATTGACATATACATGTCCTT
TACTTTTTACAACGTCCACGCAGCATTATTTGGCTTTACCTGACCTCGTCGCTCTTGATC
ATCTTGGAGAATACTCCGCTCATGGACATTCCTTCTAGATCACCCAAGTTGGTGGTCATG
GCAGCATCGTCAGTCGGCACGGTAGCGGTGGACAGGCTGCGCTGAACCAGGGGCGTTTTC
CCGGGTACGGGCGGCGGCAACATGGTGTCGGTCTCCGAGCCGTCTGACGACCCCATCTGC
AGCTGCAGCGCGAACTCGAGGCACCAGAGCACGTCCCCCATGGTCGGCCGCTCCACGCCG
TACTCGGCGAGGCACTTGTCGGCCGTGTCGGCGAGCTTCTTGAGCGACCCCGGCCGTATC
GTCCCGGCGATCCTCTGGTCGACGATTTGGTCGAGCTGGCCGTTTCTGAGACATGGCGTC
GCCCACTCTGCCAGGTTCACCATCTCCCGCGGCAGCGTCGGGTCGATGACGGTGCGGGCG
CAGAGCACCTCCAGCAGGACCACGCCGAAGGAGTAGACGTCTGACTTCTCCGTCAGCATC
TGCCGCCGGAAGTACTCCGGGTCGAGGTACCCGAAGCTGCCCTTCACCTTGGTGCTGACG
TGCGTCTTGTCCAGCTCCGGCCCGTTCTTGGACAGCCCGAAGTCGGCGACCTTGGCCATG
AAGGTGTCGTCGAGGAGGATGTTGGCTGACTTCACGTCCCGGTGGATGATGGCCTTGGCG
GAGCCGGTGTGGAGGTAGTGCAGCCCCCGCGCGGCGCCGATGCAGGCCTCCAGCCTCTGC
TCCCACGACAGGGGCGGGAGGCCGGCGCCGTAGAGGTGGCTCCGGAGCGTGCCCATGGCC
ATGTACTCGTACACGAGGATCATCTCGCCGCGCTCGTCGCAGTAGCCGATGAGCGAGACG
AGGTGCCGGTGGCGCAGCCGGGACAGCATCTCGATCTCCGTGTGGAACTCGTGTAGCCCC
TGCTGCGTCCGCCGGTTGCCGCGCTTCACGGCCACCAGAGTCTCGTCGCGCATCGTGCCC
TTGTACACCTTCCCGAAGCCGCCCTCGCCGATGACCATGCCCTCGTCGAACCCGCCGGTC
GCCTCCTGGAGCGCCGCGAACGGGATCCTGTACCCGGCGCCGGCGCCGTTCTGCCCGAGC
ATGACGGTGTTCCCGCTGCTCTTGGAGAAGCTCCGAGAGCGCGAGCGAGAGCCCAGCGCG
CTCGCCGAGAACGGCGACCAGGTGTCGGACGGCTTCTTCTCCGGCTCAGTCCTGCGCAGC
GTCCTGAAGGCGATGAACCCGAGCACCATTATCAGCGTGGCCCCGCAAACGGCCGAGCCG
GCGATGATCCCGATTTTGACCTTCGAACTGCGCGGGGACGCGGCGGCAGCGCCGCCCCCC
GCGCCCCCCCCCCCCCCCCCCCTCTCCCCGGCGGCCGCGCGGCGGCGCCCGGAGCGCGCG