Map Locations of contig_41062 (9580 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_41062

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_56701 1 1050 bp MLOC_56701.1 Available Available LOC_Os04g11810.1, FRAME:+2, EVALUE:1e-10, 13104.m01075 protein transferase family protein, putative, expressed
MLOC_56702 1 621 bp AK376212 Available Available None
MLOC_56700 1 460 bp None Available Available None





CDS Structure of MLOC_56701






CDS Structure of MLOC_56702






CDS Structure of MLOC_56700






Contig Sequence (9580 bp)

>contig_41062 9580 assembly3_WGSMorex_rbca.fasta
TGTGCTTGCCATTTTGATTATGTCGAAATGTCATATTTATATGTAATTTCTAAAAATTTA
GCGATTAAGTTATTTTTTTATCGGACAAGTAAGTACTTACTAATATGACAAGTAAGTGCA
ATAAATATAGTAAGTACGAGAAAAAAAAAGGTTATCGAAACATATCAACATGGGATCTAG
TTTTGAAGATTTCCTCGAAACAAAGTCAACGGCGAAAACGGATCATCGGTCGAATTAACG
GTTTAAGAGATAAAAGTTTTTAAAAAATCCCGTCATGTAGAACGAATTTGATAACATCAT
TGCATGACGAAGAGAGCCGTCGCACGGGATGTCGATGATGCGGCGCTTTTCGATAGAATT
TCCCAAGAATATATAAACGCAGTATTGCAGTTATTACCTGAAATAGTCCCGAGTCAGATG
GTTAGCTGCGCTGCTGCCAACTACACGAGAGCGGTATGAGTCCTCTCGCACACACTAGCT
TTTCAATTGTTTGTGGGTTTCACGAGGAAAAAAAATCTGAGCCATTTTCCTGTTAGCAGA
CCACATGTCTAATTTGCCGTCAAGTCGTTGGCAGCCGGCTCCATGCCCTGTTGATGTGCC
TAATCAGCATGCTGCTTGTATGAAAACGTGATTTGCACCGTTTACGCACGTCAAAGGCAA
GTTATTTCATCAGATTTAATGTATGTCACAAGTTTTAACACTTAACCTACTTTTTACGCC
AAATTATGACATCAGTGATATAATTGACTCGTTTGTAAATATAAATCTTTTAAGAAATTC
CATTAAATATTACTTCCTCCGTTCCAAAATTCTTGTCTTATGTTTATCTAGAAATAAATG
TATCTAAATACTAAAACGTGACTATATATATTTATATCTTGACAAATCTAAGACAAGAAT
TGTTGAAAAAAAGACGTACATGCAAAGCAAAATGGATGAATCTACACACTAAAATATATC
TAAATACATCCGTATGTAATCCATAGTGAAATATCTTAAAAGATTTATATTTAGGAACGG
AGCTAGTAGATCTTTGATGATGCGTGTCCGTCTATTTTTATGATAGGATAATAGATTTTA
TTCCATATATTTGTCCATAAATAAAGTTTTAAAATATGGATTATATTTTTATTATAGAAT
AATAGATTTTGTTTCATATATTTGTCCATAAATAAAGTTTTAAATATGGATATGATTTTA
TTGTTAAAGTTTAGACTAAGTAACACAAACAACATTACGAATCAGGTAAGCGATATTTGA
CATATTGTAGGCTTGCATAGCAGTCCAATAAAGCCCAATCAAATGTCGTGAAAATTGTCA
TAAGAAAAGTGGCACAATAGGACAGACAGGCCAAATCATGATAAATAAGCTGGAACAAAG
ATATTATGGCTATAAATGATCCAGAAGCGAAATACGACAACTGAAATTGTTGGGTCATGA
GAAGGATTGGTTTAGATTCGGTTTTACTGTTCTCAATTCATACTGCATTTACAATTCCCA
AAAGAATTACATTTCAAATCTCGACGTGAACCTAAAGTGGACCAATTGATTGTTCTCACA
CATTTTCCCCATATATGCTACGCCTCTGCAACGAGGACGCCGGCGCCTCTCCGTCCTCAC
CTTCACGAGCACATGTGTGGTCTCGTCGGCGCCAAGGAACGCTACTAGGGCAGTGGCGCG
AAGGAAGGCTACTAGGGCAACTGCGTCATCGCCCAGGTGATACAAACAACATGCAGTACG
ATGCCGAGCGGCAAAATCGAAGACCTCATGAAGCTCATCAGGCTTGCCAAGGAGAAGGTA
TCAAACATATTCGTGGATGGCGGCAATGAGACCGGCGCCGGCGATGGAGATCAAGAGCAG
CGGCTGAATGGCGGCAATGAGACCGGCGCCGGCGATGGAGATCAAGAGCAGCCGACAGCC
GCGAGGTACAACACTCTCTGCATCTCGATCGGGTTTGAAGCTGCCGATTTCAAGGGCGGG
AGGCCGACGCCCAACAATTTACATTTCAAATCTCAGCGTGATCCCAAAATGGACGAATTA
ATTGGTCTAGCATATTTTCTCGTATGGTTGAGATTTATTGTGCTAATAATTGAAATGTTA
TTTTCAGTACGATTAAAAATTTGCTTCCTAATGTGAATCAAAGTTGCTTCTTACAAGTTT
GCATCCCAAATTCACAATACATCGATTTTTAACAAATAATGTGATACTCGAATAAATGGC
AATACTCATAATACTCTCTCTAACGCATTGAAAATTGTGTTCCAACAAGCCGCTCATCAA
AAAGAAAGATCGTGTATGATAATACCAGAGATAAATTCACTGCAAGCTTGGCGAATACTC
CCTGCGTGACATAATGTAAGACTTTTTTGATACTGTCAGTGTCAAAAAACATCGTATATT
ATGTTACAGAGGGATAAAGTATTAACGAATAATGTAATACTCGAGTGTACTTGTGTATGA
TATCTAAAGTTCAAAATAGAATCATGCCGCTTCAATCACTAAAGCAATGATAAAGGCGTC
ATTTGAAACTTTGATAATACCCCCTCCGTCCATGTTTACTAGCCTCTAATATTTCAGGTC
AAATTATCACCATTCATATGACTAACAAAACAGAAAGTATACACTACAAAAAGCATACTG
TTGAATCTGTACTCCTGATTATAGACTTTTTGGTATCCATGCAAGAATGGTCCAGGATCT
AGATATGGGCTCTACCACCGACCACTCCAAATCTAAAACCTAATCAGAAACCTAATCACT
TGAGGCTTTCTTTGTTCAAGAGAGACAAGCCTCAGTAACAAATTCACAATCGACAGCTCT
GGCCATAGTGATATCAGTGTGCCATATTCTGTGAAATCGTTTCACAAAAACAACCAGGCA
ACCCTGAACAAGTATGCTCAATCGCTGCCCAGGGCAAAACAAAAATTCTTTCATCTAAGA
CTGCACCAGCGCTTCCACGCATGCAAAACATGTTAACACCACTAATCATCCCATCGCACA
CAGTAAAAGGACCACATAGGAATAAACATCTCATAAAACAAAACCATAGGAATGCCTTAC
AAAAACAGCCATGTTTGGTCTGAAACTGCGATTGGCAGCTCTGGCTCGATAACAAGAGAC
GGCCCTTGGCCCACTAAGCATGACTCTCCACGCTACATCGTCTTAAGACTAGGATAGGTA
AGGTTGTCTTCACTGAGGAACGGTGGTGATGATGTCCGAGTCACCTGAAAACATGTGTGG
TAAATGCTCAGTAAAGTTAATAGGGCAAATGACAAATGACCAGAGAGTTTTGAGTTTAAC
AGGGACGAACCAGGGTCAAGGATGCTCAAACAGCACACCCTGTAGTACTTGCCGCAGGCA
GTTCCAAGATCCACATTGTCTGAAAGGATACATTCATTAGCATTAGACCACAATTCATTA
TTTGATATAAACAAGCTAAACTACTTAGCTACTTAGCTTTAACAAGCATTGAGAAAAGGT
TTCAGACTAGGATCAAATAAACTTACTTCCATGGAAGTGATGAACGCTGATCTTGGCGAG
CATAGCATAGTACTCGATCTCAGACTTCCTGAGTGGAGGGCAGTTGTTTGCAAGGATAAT
CAACTTGCCTGAACCGAGAGACAAAATTAGACTATATGAACAGAGCCACATGTAAGAGAT
AACGGATACTCCCTCGATTCCTAAATGAGTCCAGCACATGTTTTAACAACTGCAAAGGGC
AATCTTAAATAGTTACCCAAAAAAAAAATGCACTACAGAATAAGTTAGTTAAGACGAAAA
TGGTATAAATGAATCCAGCACATGTTTTAACAACTGCAAAGGGCAATCTTAAATACTCCC
TCCATCCCAAAATTCTTGTCTTAGATTTGTGTAGATATGAATGTATCTAGTCATGTTATA
GTATTTAGATAGGGAGTAGTTACCCAAAAATAATATGTATTACTGAATAAGTTAGTTAAG
ACAAATACAATATAAATGAGTCCCCGACATGTTTTAACTGCAAGGGCAATCTTAAATAGT
TAGCCAAAAAAATATGCATTACAGAATAAGTTAGTTAAGACGGATAGGATATAAATGAGT
CCAGCGCATGTTTTATCATCTGCACAGGGTAATCTTAAATAGTTACCTAAAAAATATAAA
GCATTGCAGACTGTGCTAGTTTAACCTATACAGCAGCGGCACCATAATATCAAAACATGC
AGGGCCAAATTGCACATCATAATAACCTGAATGAATTCTAACCTGAAAATTTAAAACTAG
ACCTCCATCGTTCTTTAAAACTAAATCACCTGAGAATACATCTCCTTGGGGCTAAATGGG
ACTAGATCAACTACAAAGGCCCTATCGACAAACAAATTCGACATAACCAATATATCCTGA
AATTCCCAAAACATAACCTCAAATTGCTACAGAAAACAGTGCGAGGTATTGTCAAATTGC
TAGACAACAGTGTGAACTAATGTCAGCAAACAACAGCTATCCCAACCTCCATTGTCCCCC
AGATATGGAGGAAATCTGGGAGGGATGTATATCAAGAGGCTGGTATTATTCTAGGGCGCT
GTATTCATCTCTAGGGCACAGCAAAAGCAAGCCAAAGAGGTAAACTTCAGTCCCATTCCA
GAGTCCAAATTCGAAAATACAAACAATACAGCGAATATCACAGCATCAACTCCATTGGTC
TCAGCAGCATCCCATCGCAGCAAGCATTGCTCCAGGGCACCGAACTGATCACTGAAGGAA
GCAAAAGGATGCTCAAGGGCCAAACTTCGGTACCATTTTTCCAATCCAAAGCCCAACACT
ACAGAACCGCAAAACGACATTGACCATATCCTAACATTCAGGGCATGGCATTCTACGAAT
TCAATTCCCAGTCTGCAACCTATCCCCCACCGAACTCACAAATTATCTATCTAGCCAGCT
AAAGCGGTGAACTTTAGAAGGGGCTTAAGGTTCCACACAGAAGTAACCAAACGACAACCA
TCACCAGCTCGAATCTACACAACGGCCGAATCACAGATCTGCGACCCGACTGTTTCTGCA
TTTCCGATGCAAGGATCCAGCAAACGAACGGACTGACCAACCATTCGCCACGGCGGATCG
GAGCAACATAGACAGGCGGCGTGGAAAAAGAGAGGGGCGACCGATACCATACATACCCTT
GGAGCTCCGGAGCGTCTTGAGGACGGTCTTGTAGCCGAGGGTGTACTTGCCGCTCTTCAT
CACCAGCTGCAGCTTGTTGTTGATGTTCTCCGTGCTCTTCTTCTGCACACAGTCGGAATC
GAGGTCCGTCAGGCGGCGACGACGGCCACGACCAAATCACCTCGGGAGAGAATCAGCTCG
GAGCCGATGAGGAGGAGGGAGAGGGGTGCGGTTCGTACCGACTTCTTGGTGGGAGCCATG
GCGTCCGGCGACCAACCTCGGCGGGCGGCGGCGAGGGAGGAGGAGGAGGAGGCTGGTGGC
TTCTTCGGGGGCGGCGGCGCGGTAGGGTTGGGGAGCGGGAGGGAGCATATAAGGGCTCGG
CCGGGCGGTCGAAATTACGTGGTTGCCACTGGGTCGAATGGTCACCTCGTTGGGCCTTTC
TGGACCCCGTCCAGTCCGAATTCGGTTGCCACTGGGTCGAATGGTCACCTCGTTGGGCCT
TTCTGGACCCCGTCCAGTCCGAATTCATGGAATGGGCCGACTGAGGACAACGGTTTTCTC
TCCGGTCCAAAATATGCAAAGTTTTGCAGATTTGGCGATGACAACACCTCTTTGGCTACT
ACCCCTCCGTCCTAAAATCATTATCTAAGATAACTAGTTAGTGATAGCTACATTCATATT
TAAACAAATTTTACACAAAATTTTTAAGACGGAGGTAGTATTTACTAGGTTATAATATTT
GAAAAGGTTTGCTATTCGTAAAAAGGAAAACTAAAAGTAAATTAAAGAGGGAAAAAAAGA
CGGAGAAGTAGCTTAGTTAGCTGGTTTTATATACTGTATTATGTTTAGGGCATCTCCAAC
GGTAACCCGTAAATTTCCTTCCGCATTCGTCTTATATCTACAATACCATAAATACATATT
ATGAAATTGCATCTTATGATATTATGATGAATGTAATGATGTATGTTTGACATTTTAGAT
GTAAATTATTTTTTTCTCCACAAACTTGACCAAAAATTATGATGTTTAACTTTTCAATAA
ATATATAAGCACTATATTTGAAAACTATGGGGATAGCGTGGAGTTTTAGTTACCTAGCTG
CATATATTAAGCATTTGCTTGTGAATTGCTAGTTAGTTAGTGTAAAAAGAACTTAGAAGA
AAGTCGTTTGATTTTCTAGTATTTACTTGGTTATAATATTTGAAAAGGTTTGCTATTCAT
AAAAAGGAAAACTAAAAGTAAATAAAAGCGGAAAAAGATAAAAAGACGGAGAAGTAGTTT
GGTTAGATAATTTTATATAACATACTAAGTTAGGACATCTCCAACGTCAACCTGTAATTT
TTTTCACATTGGTCAGCACACAGGGACTAGTAAGTGGGCACAAAAGTGGTTGATCATCAT
CCAACCACTAGTGAAGATATAGCTAGCCACATTTTATGTTGGTGACACGCTAATTTGAAG
CGATGCCAGCACTATTATTTTCAAATAGCGTCAAGCATTGGCCAAATTAATACATCAGCT
TAGTACAGATAGTGCTGACGTGGATACAAATTGAAACGCCATCAAAGTGTGAGTTATGCT
GACCAGCCGAAAGATATTGCTAGCGTTGGATATCCCGACACGTCATAACAACATAACGCA
GTGCTGACGTTCACTCTTTGTGAACGCAAGCACTAAGTTTTGCCTATATAAGTGTTGGTA
GCCCTTTTTGTTTCTTAAATACATTCATTTTCAATTCTTCATAGAATACTTCTCCCTAAC
TTGCTCCTTTTAGTTATGGACCCACGTCGGCGATGCGTGTCGAAAGTTTGGGATTTCGCC
GCCTTGGACGAGCTCTAGTATGGCCATGTTGCCTACGTCATGAGCTCGCCACGGCCAATG
CAGCCGGCCCTATCCAACGAATCATCTCGTCGTTGTAGCGCGACTTTTGTTCGATCCAGC
AGTTACGCCACCAGCGTCGAAAATATCGGGAATCGAGCGAGGGCACATGTGCTACTTTGC
GGATGTCAACGCCTTGTTGATAAGCATATATGGTACACGAATTGGAATCCAGAGCGAGAG
TTTTACATTTACGCCAACTTGGAAAGGTGTGTATATGACAAAAAAATGCATCTTGATCTA
TTTTCAGCTAATTGGACAATTCAACTCCTTTATTATCGCTCATATAAATATGTGTATTTA
CATATTGTGATCCACAGGAAATAGAGGAAAACATTGATTCACATGGATATGGGTTGATCT
CGTCCGAAAGTATGTAAGCGAAGTCCTCGACTACTCCATTGGATCACAAAGACAACAGAT
AGATGAGATGCAACAGAAGAACGATGTAATACGAGGCCAAATCAAAGCGGGGCGCAGGCC
TTTTCCGACATATACCGTGAGATCCTCAACGTCAAGGCAGAAAACCTTGATAAGATTCAT
GGGTTTCTTATCCACCTTATGCTCCAAACTCATCTGATGGAAGGGCAAGAAGAACACACA
TAACTTTTTTTTTCAAGAACATGCATGAGCATAGCATTCCTAATGTATTAAGAGATGAGA
AATTTTACAAGCATTCAAACAAACATAGCACAATTGATGGCTTGGTCCACAAGAATGAAA
TGGGATGGAGGTCTAAGAGCAACATAGCACAATGTTTGTTGTCGGCTCACACAAACTGGA
CCCAAATATGTGGCAGAAATAGGACTCCCCGGGACACAAGCCGAGGACACTCTCCATAGT
CTGCTCGGGTCCGCGCTGGCCGACGAATCAGCGACCTGAGCTCGAGCGGCGCGTGCGCCG
GTGAGCGAGCTGGTCGCGGCGGCACGTCGGACTGGGACGGTTGAGGCGCACGGCGGCCCA
AGGACACGAGGGGAAGGGCGACGCGGTTCAGGAACAACAGCGGGAATGGATGAGCGCCCC
CGTCAGTTGAGACCGACGCTCCACCCAGCGCGAGGTGGAGCGCAGCTACGAGCCTGCTCC
ATCTCATGTGTGGTGAAGGATCTCCCGCACTCGACGGGGTTGGCCCTATGTCCTGGCGGC
GGCCGCCGCCGCTCGCTCGCTGACACTGGTGAGGGCGGATCGTGCGTCGATTTTCCTGTA
CCGCTCGCTCGCCCTGTTAGAATAATCCGAGGTGTCCTATCAATCTATCGAGCGATCACG
ACACCGAGGTTTGTTAACGAGGTTCATCGATATGGCTACATCCCTGTGGCCTCACTACCA
ACGCTCCTTTTCATGACACCGTCATAATATCGCACCCTGATCGTCCGGGCAACGGCACAC
GTCGTCGGCTCTCCCCCTGCGCGTCTGTGCTATTATGTCGGCATAGATTATATTGTGAGT
CTATTCCCACTATATATGATATGTCAGGGATACAAGTGTCCTATTAGGACACGACTCCAT
ATACTGTTTCAACATAATACTACTCAAAGTTCAACTGTAATCTACCTTGTATACAATATC
CGGCACAACTCTAACAAACTCTACCTTGGTGAATATATTCTCCGTCATCTTGGATTCGAC
CATGCGTTAAACCTTCATGTATATTGGACTTGATATACGCCATGAGCATCACTGCTAATC
CCAGACTCCATGTGACTCCACCTGCAACTGTAGTCCCTTCTCGTCTTCTTCACAGTCAAC
ACTCGAGCAAAACTAAGTTCCTCATTACTCTACTTTGTGCTTCCAATTTTCGGAGTATCT
GTTCAACGCCATCATAAAGTGATCACTGACTTGCGTGAAAGTAAACAACCCACATATTGG
ATGCCACATATAACATCATCGCTCTTTCTTGGCCGTCCGGCTGAAACTTGAAGTAATTTC
ACCGTCGCCTTGTGGCACCCTGAGTCAAATTCATAGTTGTCTCAAACATGTCCCACAGCT
ATAGCACTCCGTCTCCTTCTGGACTTGGCATCTGTACTTCGCCATGCACACTGAACACCA
TAGAACATACAACCATGCACTCTCTCCGCTTTTGACAATTTCAGACTTTTCGTCACTTTC
TCAGATTCTCCATGGTCAACTCTTGTCCATCAACAAGCAACGATAGACCCAGTCACCAAC
ATGAATCTGGTACTCGTCAACACTACTTCAGCACCCCTACACACTTTGTATGACCACATG
TCTCACCATTAGTGCATTGGTCTGTTGTTGTGTCATGTGCTTACCGCACGCCTCGTCCTC
GCGTCGAGCCTCTGTTGTCCTGGTCAAGTCTCTAGGGCTGCAGACCCACACCCCACTCAA
TCCCCTACTTCAGAGAACCACGGATCATCTCCGACCGATGCCGAGTAACACGTCTCCATC
ACACCACTGATACCCAGTCCGATCCACGTGCCTCTCGTTATACGCTGAAATAGGCTTCGA
CTCTCCATGCATTTACGTCGTAGCCTGATACGTCAATTTTGCATCATGNNNNNNNNTTGA
TATTTATCGCTTCTTTGGCTGATATTTCACTTCATGGTAC