morexGenes - Barley RNA-seq Database

Contig contig_41044
Source Contig contig_41044
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_41044 (7018 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_41044

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_56674	1	450 bp	MLOC_56674.1	Available	Available	LOC_Os11g32070.1, FRAME:-2, EVALUE:3e-15, 13111.m03117 protein conserved hypothetical protein
CDS Structure of MLOC_56674

Contig Sequence (7018 bp)

>contig_41044 7018 assembly3_WGSMorex_rbca.fasta
ATACTGCTTACTGTGGTCGGCCAAAGGCACATCGAAAACATGTAGGGTTTTGCCTCGTCT
CATAACTTGCGCCGCGATCGTAGTCTACCTCATCTCGAACGCCGGCGTGCATCAGCGTGC
GAGAGACCAAGTCTCCGGAACCGTTCGTCTTTGCGATCCTGCACCGGGAGAGGACGAATT
AAGTATTTGGGAAGCGTTTTGTGTGACTGTTCAAATTCGTCAATGCGAGTCGTCTACTGT
CTATGTCGGAAACAAAGAGCTTTATTCAGAAATATCGTTTCTGTCGCTATGGAAACATAG
TTTTGATATGACTTGATATCATCATTCGCAGTATATCTAACATACAATGGTGGAGGAGAC
GACTTGGAAGCTGAACTGGGTACTCGAGTGAACGTCGAAGAAGACCTTCTCCTTAGGCCC
AACCGGGCGACCGCCGTAGAGGGAGCACAGCTTGCCGTCGCCGTCCGGCTTGATGGATGT
GTCTGGGTAGACCTCGATGGAAGAGCTGAATCCCAGGCACGCCAGCTTCACGTTCTTCTG
TGGGCAGCCGCAGTTGTTCACCAGCTTCCAGTATTGCACTGGCCTTCCTCCCGGATCCGG
GTAGGTCTGCGAGGTCACAACAAGATCTGAAGTTCTGCACCCTGCTGCACTGCCTGCTTA
AGCACACGATGAAAAAGAAATTAAAGGGTGCTTATATTGACCTAAACATAATCTGATCAT
AAATAACATGCAATTGCTTGCTACTCCCCCTGTTCAATTTTTATAAGGCCTTGTAGACAT
TTCAGACACAGTGTAAAACAACTCAATTTGAGTTGTGTAAAATGACTTATAAAAGTGAAC
GGAGGGAGTAGTTCTTTTCGCATGCCGAAAAACATACCTCTCTTGCTAATACCGAATAAC
AAACAGGCCACGAGGATCACCGCTGGCTTGATCTCCATGCTGATCTGTATGCCTAGATGT
GTAAGCAGATATGCTGTCTTCAGCTTGTTTTGATTTACCTCGTCAATGGCAAATGCCGGG
CTATTTATAGGCGAACGGGCCAGAGGAAGTTAATGTGTAATCAGGATTTTGATTCTTTGT
TAATTTCAGGCAAGCATTCAATACACGATTCACCGGATATACAAGTACATAGTAGTACTA
TTTGATTGAGAAAAGGAATTAATGGATTATACGATCATATCACCAAATATATGGCCAGTT
ATTAGAGTCGTTATTTCTTGCCCTCGAGACCACCCTCCACCGGCGGAGCTTCTTGAGGGC
AAAACCAGGCCGTGCCCGTCCAGCCCTGAGGAAGATTTTATACTTACTAGCCCACCATCT
CAAAATAAATATCGCTCATTTAATATAAAATTTGTATTAGTTTAATTAGTTATAAATTTA
CGACACTTATTTTAAGACGGAGAAAATATATATGTGCAGCCCTGTAGCATACAACACTAG
GCCACTCTTGACTTCGCATGGAACACTCAATTTCCTTCGCTTCCAGCACTACTTTGTCAC
GTAGGCCACTAGCTAGCTAGCCCGGAACCAGGTGAATCCCACATGGAGCTAGGGAACTGT
ATTATCTACTACTAGTAAACATCAAATATTATTACGCTAGCAACCAGCACTGCATAATCA
CGTGTAGCCAACGAATGCCCGTTGAATTAGTAAATTTTCGAATTACGGTTTTTCTAATAC
ACATTTGTGAGATAAGTATTGCTCATCTAAGTCATATGTCATTGATCTTACATGAAGATT
CGGATGGTTTTTTTTTCCTTTTATTTATGCTTGATTTAATTATTTATATATGCAATAACT
ATGTCACATCTAAATGTGTCCTAGACACATCCTTAAAATTAGGGCACCGCTACGCGTCCA
TTGATGGATTTATAGTAATCATCCGCCAGCTAATCCGCCGTCCGATGTATGCGCATGCAC
CGTCGGAAAACCAGCTCAGTCCCCATCCCTCACCACATCAAATCTTAAAACAACATTCCA
GTTGCAGAAACAAGCATGCGGCTCTATCGCCTCCCCGACACACTAATTCCCGAAAGAACA
AATCAGCTGCAGAAACACCCGTCGATCGATCTCCTGGCACATCTCGTTTGTCCCCTCCAG
CACTCATTAATTCCTGAAAACAACGATCGCATTGCAGAAACAGCGGTCGTGTTGCAGAAA
GAGAATGGCCAGGGCGGCGATGGCCACTACGGCGTGCGGCGATCGGCATCGCCGATCACT
TCCTGAAGTTGCGACTGCACTTCTACAACGAAATGTGCACGTGCTTCCCTAACCCAGCCG
TTCTCATCTCGTAGGCCACGGCCAGCCTCTTGGCCGCGAACCCAACAATGCCCATGGCAC
CTGCACGGGAACCTCCACGATGAGCTCCAGCACCACAGCCTCCTCCTTGGACCACCTAAG
CGCCTTCTCCACCGCCTTGAGCGGCGCGTGGCCGCTGCCACGCAGCATCATGTTGAAGTC
CTTGGCGTCATTGCCGCCGTCCTCGGGCCTCCCCACTTTTGCGGCCTTCGCAAGGGTCGT
GTCCTGGTGCAGCAGCTTGGTCGTTCCGCCGTCCCTGTACCACAACGTGTCACCTTGTTG
GGGTTGATCGCTGTGAGGAAGAAGTCGTAGTCCACCTCCAGGTGGTGCTGCGCACACGCG
TTGTGCACGGAGAGCCTGTCCACTGAGAAGCTCGGCGGGTCCGGCAGCATCACGACGACG
GAGAGCAAGACGCTGTCGCCCAGGAGCAGCGCGGACACAGCCGCCAGGCCGAGCGTCAGC
AGAAACAATCTCTCCAATTCCTGAAAACAACGACAGCGTTGTAGAAACAACGACCGCGTT
GCAGAAACTGGAAAGGGATGAATGACTGCAAGGTTAGAGAAAGGGGAGAGGAAGAAGAGA
GGAAGAGCTATCTGAAGAGGAATAGATGGCTCTGAGGTTAGAGGAGAGCGAGAGGAAGGA
GAGGGGAAGAGGGGGAGATGCAGAAGAAGAGGAGGCGGGGCGCGACTTCTCATCGGCGGG
CGGCGTCGCGAGTGGTCGCTTGGGGCTCAGGACACGTGACCATCATAGCAGGAGGCGGAC
GCAGCAGACTGATCCCTCGGTTGAACACAAGCTTTATTGTTAAAATTATTATTTTTTATG
TTCTTTTCTAGATGGCCCACCCTGTTTTTTCATCCTAGCTGTATCACTGCTCCAGACAGT
CTACGTTTTTGGCCGTTGCATCTGTCCTCCTAGCGCGTGTTTTTCTTAATAACTCATAGG
CGTGTTGATGGGGACCTCCTACCTGCCGCTCACTATGGCAGGCAGCCCTGCGCCGCACGG
GGGGGCGCCAGAACTAGGCCGGCTCAGTTTTGTTTCTTTATTTTGTTACTTTTTTCCGTC
TTTGTTTATTTTTTTTGGTTCGTTTTTTCTTTTCTTATTTTATTTGAAGAGAAATCAATT
TTCGAATTTGAATAACTATTTTTTAAAATCATGAACAAATTTGGAAGCGTGAACAACTTT
TTAAAGCATGAAAATTTTTTAAATCTTGAAAAAAAATTGAAAAGGAGAAATTTTTGAAAA
CCCTAAACAAATTTTAAACACGAACAAATTTTTTAAGCACCAAAATTTTTTGAATTTTGA
GAACAAATTTTGAAGCCGAAAACAATTTAAAAAAACGTGAACAAGTTTTTAAAGCACGAA
CATTTTTCGAATCTTGAGAACAATTTTCAAACTGCATACAATTTTTAAAAAGTTAATAAA
TTTGGAAGCACGAACAATTTTTTAAAGCATGAACATTTTTTGAATCTTGAGAACAAATTT
TTGAAAGGTGAATAATTTTGAAAACCCCAAAAAAATTGATCGCATGAACAAATTTTTAAA
GCGCGAATATTTTTTGCATTTTGAGAACAATTTTAAAAAAACATGAACAAATTTGGAAGC
GCACACAATTTTCTAAGTACATGAACATTTCTTTAATCTTGAGAACAAAATTTTGAAAAG
GAGTATACAACTCCAAACAAATTTGAAAGAGCGAACAATTTTTTAAAGAACTAACATTTT
TTGAAGTTTGAAAACAAGTTTTTGAAACCGAGAACAATTTTAGAAAACGTAAACGAATTT
GGAAGCGCGAACAGTTATTTAAATACACAAAAATTTTGGAAAAACATAAACAATTTGTTA
GCCTTTAAATAAATTTGAAAACAGGAGCATTTTACAAACAAAGAACTTTTTTTTCCACGA
AAGAACAATTTTTGAAATTTGTGAACATTTTATTGAACAATTTTTGAAACACGAACATTT
TTCAGAAGATGAAGACATTTTGGAAGCAGGAACACATTTTACAGCATGGACGTTTAAATA
TAAACTGTGAATACGAGAACATTTTTTGACATTCAAACAAAAATGATAAAATGGCAAACA
GAAAAATAGAAAATGAACAAAGTGAAGGAAAAAATTTAAAAGGAAACAATAACATTTGTT
TTTAAAAGAACATTTTCAAAAAATGGCGAATAATTTTTGAAGATGTCAGACTTTTTTCTA
AAATCCCAAACATTTTTTGAAGCTAGGAATGTTTCTAAAAAAGGGCAAATATTTGAAATA
TAGAACATCTTTATAAAATCAGGAACATTTTCTGAATTTTACATTTTTTAAACATGAAAT
TAGGTTAAAAAATAACCATAGGAAAAATGGAAAAAAGAAACAAAAGAAAAAAAACAAAAA
AGGAAAAAAAGGAAAAAAGAAACAGAAAAAGCACAAGAAAATTGAAGCAGAAACCGAAAC
TGCCTGCAGAGGGAGGTGGGCCGCTAGGCCGCCAACGAAACTGAAGCTCTTCTATTGTTT
GGGTATATGGACGTCTGAAGCGACGCTGGTAAGTATGACTGTGTATAGATTTGAAAAACA
ATTCTAGAAATGGTCACCAAGGACTGAAATAATTTGTGGGATGTAAAAAGTGCAGATGCA
CGGTTTAAATAAATGTGCGTACAATTCAAAAAATATTCATAACATTTAAAACTGTCCGCA
CATTAAAATATTTGCATGATATATTTTCAAATGCATGAAAATGTTAAAAGTTGTTGCGTA
AGAAATGTGCATACCATTTCAGAAAACTAGCAATGTTTTGGTTGAGTCCAGCCCAATGTG
CATACCATTTCAGAAATCTAGCATGTTTTCCACCACAGGCCAAGCCCAATTTCTCACACT
ATGTGCTTCCTTGAATCCTGGCACACAAAAAAATATGGAAGCTCGTTGCGGCCAACTGCC
GAGTGGATGCACAGGGTCGCCAGACTAGGCCGACCCAGATTGTTTTTCTATTTTCTTCTG
TTCCTTCTTTTCTTTTCTGCTTTTTTTTTCTTTTTGATTCTTTCTTTTCTTTCTTTTTTC
CTTTTCTTTTCTAATTTGAAGCAAAACATTGTTAGGATTTGAACACTAATATTTGAAAAT
TCGAATCAATTTTTTAAATAGCAAACATGTTTTGAATTTTCAATAAATATTTAAATATTA
ACAAATTTCAGATCCATGAACAAAATTATAAAACTGTGAACATTTTAAGAATCTGGAAAA
AATATTTTGAAACCATGAACAGATTTCAAATTGTGAACAAAATTTAAAACATGAACAAAT
TTTGAAACCATAAAACATTTTTTCAATTACAAAAAAACTAGAAACATGAATATTTTCCAA
AATTTCAGAAAAAAATTTCAAAAGCCGGAATATTTTTCAAATTACGAAAAAAAATCAAAT
TTTGGAACTTTTTTGAAAAAGCTTAAATATTTTGATCAAAATTCCAGAACAATTTCCCAA
TTTCCCGAATATTTTTTTCACAATTACGAAACAATTTAACAAATTCGGGAACATTTTTTC
AAATTCCGCAACACTTTTTAAAATTCCGGAACTTTTTTCCAAATTCAGAACATTTTTTCA
AATTCCGAAACAGTTTTTGAATATCCGGAACATTTTCTCGAATTCCGGAACATTTTTTCA
ATTTCGTAACATTTTTTCAAATTATGGAACATTTTTTGAAAATACGGAACATTTTTAAAA
TTGCGGAAAAAAAATAAATTCCGGTACATTTTTCAAATTTCAGAACATTTTTTCCAAATT
CCGGAACATTTTTTCAAATTCTGGAACATTTTTCAAATTCTGAAACATTTTTTGAAAATC
AAAAACATTTTTAAACAGCAACAGGAAAAAAAGAATAAAGAATAAATGAAAAAAATGAAA
AAACGGTTCAGGGAATCTTCTAGAAAGTTTCCAAAATCAGAAAAAATTGGTTGGAAACCG
CTAGAAGGTTCCCAAAACCGGATTGCTAACGGGCCGGCCTAAACCCGTCGTCGACTAGTA
GCTTTTGTGCGTTTGCCCGCCTATTTGACGCAAAGAGCTTCAAATAGGGTTTCCCCCCTT
TCTTCTGCACGTGTGTCGATGATGACCAACTCAAGCTAGTAAGATCCACGCCGCCATGCT
ACCCGCAGCCACACTCGCGCCGCCATCGTGTCTTCATTCACACCGGTGTGTCCTAGCCGG
ACACTGCTTACCAGAATCACTTGTAACTCACACAATTGGCGTGGTTCGATCCGATACGAC
TGTTTTCCTTTCCTTTTATTCGGTAGAACAGAAAACACAAAGAACGAGATAAACCAGGTT
CGATCCGATATGACTGCCACTCGACGAAGCCAAGCCGGCATGCACGTCGACTACACCAAC
GACCCGGACACAAATACATCTCAGAGTTAATTCTCTAATCACGACAAGGCCACAAAGAAA
ATTGGGGGCTTGGTATATCAGAAAATGAGAAGTAGGATGGCCTCTCCCTCTTCCTCTCTC
TCGGAGGCCGAGCCTGCGGAGACTAATATATCGAATCCCACCGCCGACTCCATTCACCCA
CCCACCCACGGCGTCGCTCGCTCGCTCCACTGAGCTCACCGACGACCTTCCCTCATGGCG
GGGGGGGGGGGGGGTTGTCAGTTTTGAATCCGGCGGGGGGCCCCCCCGATGCGGGGGGGG
GGGCCCCGCGCCCCGCACCCACCGGGCGGGGGGGGCGGCCCCCGCCTCCGCCCCACTC