Contig Data
morexGenes
Links



Map Locations of contig_41040 (9064 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_41040

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_56670 1 1688 bp MLOC_56670.1 Available Available LOC_Os01g50410.1, FRAME:+2, EVALUE:0.0, 13101.m05244 protein STE_MEKK_ste11_MAP3K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
MLOC_56669 1 494 bp AK354218 Available Available None





CDS Structure of MLOC_56670






CDS Structure of MLOC_56669






Contig Sequence (9064 bp)

>contig_41040 9064 assembly3_WGSMorex_rbca.fasta
GGAGCCGGCGAAGCAGGACTGGGTGTCCCCGAAGAGCACACTCAACGCGGAATTCTGGGA
GTCGGACGACGAGGAGAGCGAAACAGAGGACACGCTGACGAGCGCGGCCGAGAGGATCGG
CTCCCTGGCGAGCCCATGCTCGGCCTTGCCAGACTGGGACTCCGATGATGGCTGGATCGA
CGTGCACGGCGAACGCTCCGAACCTTCAGAAACTGCGACGGCCGCGGAGATCGCCGGCGC
AGATTTCGGCCCTTGGAGTGAAGAAGGATTGGAAGCCGAGGTTGATGTCCATTTCGCTGA
TGCGGATGCCAGTAGGTGGTACGGCCTTGTGCGGAATGTGGATGGAGCGCATTATTTCGA
TGGGTACGAGAGAGATTTGAGTGTGAATGTAGCTACTGACAGACAATTGTGGATCACTGT
TAGTCACAGACATGAAACTGTAAAATTTGGTTGTCGTTGCGACAGAGAAAGAAAATTACA
TTTTGATTTTGCGCAAATTTCCTTCTGTCTTCAACTTCCGTGGCATGCTGTTTGCGTTCT
ATCTTGCACTGAATGGAGGGTATTATCGATCTTTGCCTTTTTCTTTTTATAACTGCTGGC
TGCTAAGGACCTCTTTAATTTGCAGGATTTAAAAAGCAGGGAACTAGTAGGAAAAAAACG
CAGAAATAGAATATGGTTTCAGGATATAAATGGCGTTGGTGTCCACTTGTCCCTTATATG
CCATCCACTTAAAAAAGGTTCATATGGCGATCATAGAAATTTAATGAAATTAAGTGGCAT
AATTGAACAACCCACCAAAGCCCACGATACAAACGTTGATCATTTGTTGTTCGCATCTTT
TTCCAAACACATGAACTGCAATTTCACATCCTAACCCCTGCGTTCTCGACGCCGTCGTCG
TCGAGCTAGGCGACTGGCTGTCGGCCTGCTGCAGCTGCACGTCAGCTGCCTACCACCGAC
TGCGGAGTGGGCGGGTGCGGCCTGCGGGCTATGTGCGGTGGCGTCGGGAAGGGGCAGGGG
CGGGGCATGTTGGTTAGAGTCGCCAGTGAATTAGGGCGACGAGATCCGCAGAAGTGCAGA
GCAGTCGCAATGGGAATCCGAGACGAAAGCAATGTCGCAAGCATGAAGACTCCAGCGGTC
GCAAGGGATGCAGTGGATCATTTTTATATTCCTGCGGCGGCGCGGGATGCAACTCGTGGC
AAACCATTGTTTGCTTGGCGAAACTTGTAGCCATACATGAACGCCACATAAGCCACATAA
ATGTTAACTCGACAATGATAGAATCCTATATAGGAAAATACGGACAATGCGGGCAAGTCC
CATAACGTTCAACAAACTGTCCACTTACATCATGAATATGGTTTCTTGTGCAAAATAAAT
GATTGCGAAAAAAAAGGAATTTGCATAATTACATGTCTGATATGTAGGAATAGAAAAAAC
ACATGACTCCTAAAATGCATGATCAAATTAAGGTTAGACTCCTCCAAGACGAGGGTTTTC
CGCCTTCTACCAGCTTCGATGCTGATCTGCCACGTCTTCCGAGGCCTTCAGACCATGGAG
GCATGGTGGATCCCGGCTCTTGTCGGCGGGAGGGGGGCTTTTAGCTTGTTTAGTGTTTGT
GTCTTGTGCTCATGAAGAGGATGCTGTGGCAGCTCCCCGGAGATGAAATAAGGTTTTCCC
GTCTAGCCCTATACTAATAGTGCATCTTCTGTCGCTGAAGGGCATATGAACGTGTGTCTA
CGGTGGATCTTGTGAATTTGGCTGGTGTTTATCTTCGATGGATTTGTTTGGATCCGATCT
TCATTCGACTACATTCGTGTGTCTACAGGTTGTACTCTTTCGATATCCGTTTCTGTTTAT
CAATGACGGATGATGTTGTGGTGCGCTGGTCCTTTCAATCCTTAGCATGATGACTTCTTG
ACTGTCTACTACAACAAGGCTTACTTGACTCCGACGAGGAAGGGGCTGTGATGGTAGCAC
GCCTTGAGCTCGATCGGATGCTTGTAGTCATCGCTAGATGGTCTATGGAAATATATGATT
TTTTATTACTTCTTGTGTTATTTGTACTCTCATGATGTATGATGAATGGATCTTAAGTTT
TATGTCAAAAAAGGGATGGAGTTAGTATTATGCCACTTATAGTCTTTCCCTCATTGTTTG
TGCATAGGAATATAAAAAATGGTCTGAGTGGATTGTAAAATTTTGTTCTTTTTCACGAAA
CTGATTCCAAAAGAAAAACTCCTTCATTTTTCTTATGGTTCGTTAATTCCTTTGAACCAA
ACACACAAAAGTTGTCATGATAGGAAAAAATTCCACTCCTATGATTTTTCTCTATTTTTC
AAATGAATCAAAGTGGTCCTTACTAACTAGGGTTTGGGTAAGATCTGCCTAAGTCGATAA
TAGATTCCATTTCTGCCTCACAATGTTCCACATATTCTAGGCTTCAACAAATTAATACTC
CGAATCTTTTGAGAGACAATGTTGTGAAGATCTAGATCTGCAATCGAGTAAAACAAAATT
ACCATAGTACTCTTTGTGATCCATATTACTTGTCGATGTACTAAACCAATGTCATGTACT
CCCTCCTTTCCGGTTTATAGGGCTCAAATCTGAAATCTCATTAACCAAGGTGAATTGTGA
ATGGATGATACTAGTTTTAACTAGTCGATGAAAAATTTCTCACATATTCAATTTCCAAGG
NNNNNNNNGTAGCATCCTCCTTCTCATTGGACTTACATGATGGTTGTAGAAAACGATGCA
TGCATAACCACTCATCTCCTTTCTCTAAAACTTTATAAATTAAATATGGCGTGGGACTCA
AAGCACTTTAACTCAATTAGATCAAAATAAGTCTAATATGATGAAGATCTAAATTTTTTG
AGATGAGTCCTGTAAACCGAAAACGAGGGAGTAATATAGATCGAAGGGAGTATCATCTTT
TGGTTTTGGATATCAGGTCATAAGTCGTCCTTGTCACAGTATGTGTTCTCAACAAATCTT
CTTCAAAGGAAGCCATCCGATGTCAAACCACGGGAGTCAAAGGCTTTGTAATTTGTCTCC
TCAGAGCGGAAATAATTCATAGGCACATGCGATAATGGACAAATAAAACGTGAACTGAGA
AAGTGGAAGATTCAATCAATCCCTGTACCTTTTTTTCAGGATGAGGGATGTTTGGTGCTA
AAAAGGTCAAGATGTTGTTTGAGTTACTGATATTAAAATCAACCGATGCGCTTCCAAAAA
TGATTGGCAGGGGTACTTACGAAGATGACATGGCCACACTACAAATTTATGGAAAATATT
TGCTGTTTCAAAAAAAACTATGGCTATTTCTCAGGAAAAAAAAACTTGGTTCAAAAATAA
AGCATTCCCGACAATTATTTTTATGATCATGCAAGAAGACACGTGTCTTTAAGTGATGAC
GTGCTCATGAACCAAACTGAAGCTGAGCGAAGAGAGAAACTGAAGCGTGCACCCTTTTTT
CGGTTGCTCAACAGAACCGTTGCCTGAAAAACCTAACCAACAGAAATTATACTTTATCTA
AAATGGATTACCAACAAGCTATGCATGAAGAAAATTGCACGGTTTGATCACGCGGTTCTT
GTTCCAAGGAAAAAGGGTCAGCCGACGATGATTCGGAATCTCGGAAAACATGACAGCTCA
AACAGGTCTAAAATCCGACACGTAGCACGTACGCTCCACACAGAGGCTTAGGCTAGTGTT
CGGCGCATGTGCTTGCCTAAACAGCGTGACGCCAGAAATGATTGATATAGCTAACTAATC
CTCCATCAGCTTCAGCCAAACTCCGTCACGTACTCACATGGCTTCGGAAATTTCAGTCTG
GGCGAGCCGCCCATGTCCGCCGAACGAAACGTGCCTCTGGGAAACGGCGATGGACGACTG
GATGATGATGGACGTGTATTGCCCTTACGGCAGCTCTTCTTCTGAGACCTCTCCACGTTG
TACAGAGCCTAATGAGAGAAATGTCCAAGACGAGGCTGAGACGTAACCGCGAGGCACATA
GCCAACACGACGCATCAAGGAGGCCTTATCGGTTAGGCTGTGGGCTCTGTAGCACGTGGA
GACGCCAAAGTGACACTTCACATACATAGATGAGTACTTACTGAAGCAAGCAAGCAAGCA
AGCAACGGTGGTATATGTCCATTATTATATTCTTAAGAGCAGTATGAGTGGCACTAATCA
TTAATCATTATCCATTGTGTGGCTGCATACAAATCATCATCGTATACGTTGACAAACGTC
ACGTTGCATCACGTGACGTCCACAATTCGAATTCAGCCGCCGACGCACCTTCCCCTGAAG
CTGATCCAGATCCGCCAGACGAAAAGGCAGCGGAAAAACGACGGGGAAAAGGCAGGCCAG
AGAAGCCATGGCCAGAATAAGACCCGCACGTTCGTTTACACGGCACCTTCCTTTGCAGCC
GGAGAGGAGAAGGTGAAGGTCGCACGAGGCTTTTTCTTTTACCCAAAATGCTAAACGCTG
CGAGCCTCATTTTCCGCACGTGTTCCGCGCACCCATGGCGGTCTCTTCCTCGTCGCGCGC
CACTCCGCACGTATAAATGCAGCTCGCGCGCCATCCGTCCATCCTCGCATACCAAGTCAG
CTCGCAACCCAGCCGGAGCACCGACGACCAACGATGGATTCTGCCGTGGCGAAGCAGCTC
AGGCGGATCCGCACGCTGGGACGCGGCGCGTCCGGCGCCGTCGTGTGGCTCGCGTCCGAC
GAGGCCTCCGGAAAGCTGCTGGCCGTCAAGTCCGCCGCCGCCGGTGGCGCGGCGCAGCTG
GAGCGCGAGGGGAGCGTGCTCACCGGGCTCTGCTCGCCGCACATCATCCCTTGCCTCGGC
TCCCGCGCCGCCGAGTGCGGCGAGTACCAGCTCTTCCTCGAGTTCGCACCCGGCGGCTCG
CTCGCCGACGAGGCCGTCCGGAGCGGGGGCTGCCTCCCCGAGTCCGCCATCCGGGCCTAC
GCCGGGGATGTGGCCAGGGGGCTGGAGTACCTCCACGCGAGGTCGCTGGTCCACGCGGAT
GTCAAGGCACGGAACGTGGTGATCGGTGGTGACGGCCGCGCCAGGCTGACTGACTTCGGC
TGCGCGAGGGCTGTGGACTCGTTGCTTCCGATGGGAGGCACGCCGGCGTTCATGGCGCCG
GAGGTCGCGCGCGGCGAGGAGCAGGGGCCGGCGTCCGACGTGTGGGCGCTCGGCTGCACC
GTCGTCGAGATGGCCACTGGCCGCGCGCCATGGAGCGACATGAACGATCTGCTCGCGGCC
GTGCACCGGATCGGGTACACAGCCGCCGTGCCAGAGGTGCCGGGCTGGCTCTCGGCGGAT
GCCAAGGACTTCTTGGCCGGATGCTTCAAGAGACAGCCCAGCGACCGGTCCACGGCAGCG
CAGCTCTTGGATCACCCGTTCGTTGCTGCCGCCGGCGACTACAAGGCGGCGCCGGTGAAG
CAACAATACGCGTCCCCCAAGAGCACACTGCATGATGCACTCTGGGACTCGGACACCGAC
GACGAGGCGGACGAGATGTCGACGACGCCGGCCGAGAGGATCGCGGCATTGGCCTGCGCC
ACCTCGGCCTTGCCGGACTGGGACTCTGACGACGGCTGGATCGACGTGTGCGGCGAGGTC
TCCAGAGTCCCCGACTCGCCGCCGGCCGGTGCAGGTTACCTCGTTGGGCCGGAAGAAACA
GAGGCAGAGCGTGAGCCGTTCGCGGTTGCTGCCGACGACAGCAACGGCATCCCGCGCAAT
GCAGTGTTGACCGACTCCTCCATTTGGCAGGACAGTTATGTGCGTCCTGTGCATTTAGGC
AGTTGTAGAAATCAATTTCACCCGTTTCAACCTGACGGGGGTGAAATTTCGAGATTTGAT
CGTCATTGTAACAAAGACAGAGTAATGCAATTCATATTTTGCTCAAAATCTCAAAGTCTA
CGACCAACCCTTGTAACAAAGACAGTAATGGTGTTCATTCTTTTCACTCTTGCGCATACC
GCAAAAGATCTTCCACAACCCCTGTAACAAATTTACGGTACCGCCCAGCATCAGGAAGAA
CATATTCCGTAGTTATGGAGCCCACTAATCAATAGTTGAATTTACAGCAAGGTCAATGCA
AAAGGACAGTGATAGGCGCGTGATTGTCGGCTGAAACTTTCGACTGGTCCAACGCCAGCC
ATTGATTTGTTTTAATGCGCATGGTCAGATCTCTTTTTCTCCTCTCTCTCTCCATACGTT
TTGTTCCTCCTGCCTCTCGACTCCTCGAGGCAAAAACAAATCTGAAAACCATTGTCGCAC
CGTACCCCCGTTGACCCCGCCTCTCCCTCGTCATGGATGAGCTCTCCGCGGGCCTCGAAG
CTCGCCTCCGCTCCATTCTCACTTTCGGGGGCAGCCGCAGTTCCAGAAAAATGACATCTA
TGTGGGGCAGCCACGCGCCGTTGCCGTTGGCCGGGGCCGAGCGCCATGGATGCACCTCTG
TCATCCGCGCTCGCCATGTATAGATCCCGCACTCGTCGCCCGCGCACGCCATGGAAGCAG
CTCCGCCTCACTGACGCATGGGCAACAAATCTGTCAATAGTAGCAAAATCAAAGGACAGT
TGTAGCAAAACCATCTCACCGCTGTCGCAAGTCTCAGCTTCGGCGTGATGGATGTAGCAA
AAGGTTAGACGTAGCAAAAAACCATGACGGTTGCAACAACAAAATTCATCGCCGTCGTCG
CACCGTTCGTAGCCTCGATCTTCTCTAATTCCAGCAAAATTGGATGACGGATGTAACAAA
TGGTTTTGCGGGTTGCAGCTCCGCAGCATGCCGATCGTAGCATTCCGCCACATGTAGTAG
CTCCAGAGCACGTCGGTTACCATCGATGTAGCTCGCTCGCTGAAGGTGACGAAGCATGTG
GCAGCGCCTTGTAGCAAGTGATTGGAGGATAACACGATGCTCGCGGCAGCTGAAATCAAA
GGAGAAGGGGGAGGAGATGCTGTTGACTTGGAGGAGGAGGAGGCGTTGCCGGCTTGGAGG
ATGAGGAGGAGGGGTTGTCAGCTTGGAAGAGTAGGAGGGCGGCCAAGTCATCCGTAGCAT
GGAGCGGCACGAGGTGTGGCCAGGAGCTGAGAGATTTGGGAGCAGTGAAGAAAGAGTCTG
AGATGGGATAAGATAAGGCAGCAGACGTGTCTTTTTCCAACAACTAGTCACCAGTGCGGG
TGCAGGAGCGGCAGACCGAGCGTTCGACCGACGCGCCGAACCTAAACGTTTACCAATGGA
AAATAGGATAAAGCTTCTTAAAAGCAAAATCTAAATTGCAATTGGGTCCACATACCCCAA
TCCGAACCCCCAATCTTCGCTTCCATGCACGAGCAAAGCGCTAGTGAACCCTGTTGAGGC
ACCTGGTGAACCTCGCGGCATGTACCGAGGCAAGCTCGGATGCTGCCTTGCTGTCCTCCT
CCCATCTCCCGGTCAAAGCTCGAGGTCACTAAGGAGGAACCCGTTAGCAGTGGAAGTGTC
ACCTTCGTGTCTCATGCTCCATTAGAGCTTATTTTTAGTGATGTATGGGGTCATGCAAGA
GATTCTTTTGGAAGAAACAAATATTATGTTAGCTTCATTGATGATTTAGTAAGTTTACTA
GGATATACTTGCTTAAACACAAATCTCAAGTTTTTCCTGTCTTCCAAGAATTCCAAAAAC
TTGTGGAGAGATACTTTTATAAGCAAATTATCGTTGTTCAAAGTGTCTGGGGTGGAGAAT
ATGAGAAGGTCATCTCTTTCTTTCGCAGTATAAGCATTGATCATCATGTATCATGTCCAC
ATGCACACCAACAAAATGGTTTTGCTGAACGCAAGCATCGACACATTGTTGAAGTAGGTT
TTCGCCTTCTTTCACATGCATCCATGCCTCTTAAGTATTGGGATGAAGCCTTTATTGCTT
TATCTTATCAATCTTTTACCTAGCAAAGTCATTGGCAACACCACCCTTTATAATGATTGT
TTCACCAAAAACCAGATTACAATTCCCTCCAAGTTTTTGGATGTGCTTGTTATCCTAATC
TTCGTCCATATAATTGTCACAAGTTTGAGTTCCGTTCCACCCAATGTGTCTTTATCGGTT
ATAGTAACCTTCCAAAGTATTCAAGTGTCTAGAGATTCCCACCGGACGTGTCTATATTTC
CCGGGATGTTGTCTTTGACGAAAATATCTTTTCGTTTGCAAAACTTCATCCCAATGTCGG
AGCCCTTCTCATGCAGAAATTTCACTCCTTTATGATCCTGATCACGGGGGCGAATTAAAG
AGGGTTAATCATGTGATTAGTTCACAAAACAACTATGCTGAAAATAGTAAAACACTGCAA
ATTCTGCTTATGATTGCATGTGTGCAGAAAATGATGAAATAGGTTGCAGATTCCAGGAGG
ATTCTCCGCACATCACAGTTGGTATTGCCGGATTCGAGGGCGATCCTGTTGCAGCGAGGC
AGGCCATATTTATCGCGCCAACGCCAAGTGGTGCAACCAGGCAGGTTGGAACGCTAGTGG
CCGACCACATGGAGCCCATCGGTCTCAAGGACCCGGTTCTCCGTGAGTCTCCGCCACCCA
CACGCGGGGCGCCATGCAAGGGGCATGCTGACAACAGCGATTGTCGCTACCTGACACGTC
TTTGTCGTATCTACATTTCCAAACACTTTTGCTCTTGTTTNNNNNNNNNNNNNNNNTGAT
TTGAATGGAACTAACCCGTACGAATGCCTTTTCACCAGAATTGCCATGGTTTTCTTTTTT
GTGCAAAATCAAAGCTCTCCAAATGAGATGAAACTTTCCAAGTAATTTTGATGGAACTAA
TAAGGAATATTCGAGCAAAGAACAACCGCAGAGGGGCACCAGGGTGCACACATAGCACCT
GGGCACGCCCCCCGTGGGGCGCACACTCGTGTTGTTTGGGTCCCTGGTGGATGATACGCC
TCCATCGTATCTACTTTTCTGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGCACAATTGCCATGGTGTTGCTTTT
GTGC