morexGenes - Barley RNA-seq Database

Contig contig_41036
Source Contig contig_41036
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_41036 (6448 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_41036

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_56660	3	1628 bp	MLOC_56660.1	Available	Available	LOC_Os04g17100.1, FRAME:+1, EVALUE:4e-102, 13104.m01550 protein heavy metal-associated domain containing protein, expressed
CDS Structure of MLOC_56660

Contig Sequence (6448 bp)

>contig_41036 6448 assembly3_WGSMorex_rbca.fasta
CCTATAGTTAATGATTCCTCTAGAATTGGCAAACTAGAAGATGGCATAACCAACTTGGGT
TCCGCTTTTGCAATGAACTTTTTTCTTATTAGCGATCTTTGTATGAACTTTGTTTTAATT
CATTTATATTTGTGGAAATTCATTATCTTTTGTTGGATATGGGAACTTTTTTTGACTTTC
TAAACCAGTTTTTTAAATTGAAACATGTTTTTGAATATGGAAACTTCTTGTAAAATGATA
GATTTTTTTGTAATACATGATCACTTTATAATTTCTTGAACTTCTTTCAAAATTCATTAA
TATTCGAATTATTGAATATATATTTTTGGTAAATCGGAATATCTAATAAAGAAGAGCAAG
ATAAAATGGAACTACATGCAAAAAAACTAAACTTTGAAAAATGATTTTTGAATGTTTCAA
ATAGGAAACAATTTTTGATGGCCTTAATTGTTGGTTGATGAACAATTGGCAGGTGAATCC
AAGTTTTGGTAACAAGGGAGAGAGTAAATGCCTGTATTCGCAAATTCAGAAGGGTAAGTC
ATCATACTTTTTTCTGTTATTGTCAATACTTTGGAAATACAAGGATTATATCGGCATGTC
TTTTATGTGCGGAGCTTTATCTGAAAATGGATCTTTTATGTGCAGATAAATTTACCGAGC
ATCTTCAAAAATAAGGACTTGCTACTGATGTTTCATGGACTCATTTGTTTCTGTGTCATT
CACCAGCATTTTCAGAAGTTAGAGCTATAACTGATTTTGTGATCATGAGGGATATGCATA
TTAGGATGCCTCTTGGATTTGGATTTATCGCAATCGATACACAGTAAAGTACGTGGATAC
GTCCATCCCATTGTTCTTAGTGCATCTGTTGAATTGCATTGTTTATTTATTTTCATATCA
TTTATCATGAATTTGTTTTCCAAATTGGTAGTCCTTCGGATGCTCTGGTATAGTTATCCC
CGATGTTTTTTCGCAGCTGGTACACAGTAAAATATCTGGATACACTAATCCCCGATGTTT
TAAGGGTTGTGGCCCTTCAGTTTAAAATAATTTAACTTGTTGATGGTGAAAATTAGTTGA
TGAACTGTGCTTCTTCCAATTCTAAGTTTTGTCCCTTACATGCTCACTTCTATGCATTTC
TTACGGTTCATTATTCTGTACAAGAAATATACCAAAACAACACAAAGTTGTCCTCCTCAT
GTTACTCGGTACGAAGACCATCGACCATCACGATAGCATTGGCCTTCTTATAAGAAGATG
ATGAGCCAATTGGCCTTATGAAACATCCATGATATCATTGATCAGAGTAGTAGTGCAATA
CCCTAATATATGTTTCTAAGTGGGCATCATTTAACATCATACCTATCTTTTTACTGTTTT
ATTCTTTGACCCCTTAACTCTAGATAACTATTGTGGATTATTTGAGGAGATAAACATTTC
AAACACAATTTAGTTAATATTCTACTCATTTTCGTGGCTCTCTTTGTAAAGAAAGCGATT
ATCCATTTCTACTCATGTCTAAACTGGGTATATGCTTTGGTGTATTTCTTCAATGAAAAA
CTTCCTGAACATGTGTTAATTGTGCGCTTTATCTACTTAATTTTTTTGTGGGCTTTTACA
TTCAGATTCAGCTGCCACCAACATAAACGTGGCTATGACGGAAGATGGTACATATATGTC
ATGACACTCTACACTGTTTGCACAAGCACTACTATTAGTAGTTATAGATCAGCTACCACT
TACAATGGTGCCCACCTCCTATGATGGATATTTTTGTTTATAACTTATTAATTGGATGTT
AGAACATGTATTATCCATGTAAGAATCTATTCATTCTTATTTTGGGTCTTGTCTTTAATC
ATTAATTTGGTTTTTAGAATTTTACATGCTATCTTTCAGAATCATGTCGGTGCCTTGTAG
AGATTTGGTTCATGTTTAGCTAATGCTTTTGTTGCTGCAGAACATTGCTTTGCAAACGTT
TAGGATGCTAGACTGATTGTGTTGCTTCGTTCTGGTCTAAGGATCTCTTATGCTAAAATA
TTATGGTGCTTTGCTAACTGATGGTGGTTCTTTGTGCTTGTCAAATAAATTTTAGGCTGA
CAATGGTTAGTTAGTAGTTGTTACTTCCTCCGTATTTTTTTGACAATTGCTACTTCGTCT
GTAAAGAAATATATATTGCTCTCTACATTTCAGTTTATAAGTCATCTTATAATAAAGAAA
TAGTTTCAAAACACTTAGGCGCGGTGCATTAGCTTCCACCTTGTTTTTTGATTTTTTTTT
ACATGAATAAAGGAATCAACCAATACGTAAGAGACGTGAGCGTGTATGTTTTTAATGATT
CGAGAATAACTAACACGACATGCAGTGATCAATTCATTGCATGCAATGAAACTAATTAGT
AAATTAACATTAATTTCTCTTGTTTTTCTCTCCATCTTGATCACGACGCACAACCTAAAA
TAACTTACAAACCGAGACAGAGGGAGTAGACAACATTTTTGTTTGGGAATGAGAATGTTA
CCCGAGAACTAATGTGTGTCAACTCATAAAAATGAGGCCCGCCATCGACGGCCCCCAGCC
ACTAGTATGAGTATGAGAATGGAAACGCAGCGTGGGCCAGCCAGGAGCGTTCATTTCCCT
CCAACTCCGCAGTTCTTTTCTTTTTTTTGGTGGGAGGGCCAACCCCGCGGCAGTGTGGAG
CCACGTTCGTCCATGCATGCATCCCTCCGGAAACGAAAATATCTGCGGGCAGCTGATGTG
GCAGAGAGCGGAGGAGGGGAGAAGGAAGGAAGGAAGGAAGGTGCGTCGCATCTGAACCGA
TGCACAGCACGACTCCCCCACCCACCAGCCAATCAAGTCCGTCCGTCCCGAGGTCGGCCA
GCCGGAGCCGGTGATTAGATTACCGAAAACGACGACGACGTACGGCTCCATTCGTTGGCA
CCCGCACGTACTCCAACTACAGTTATAAACAGCAGTGCGGCACCCACACTGGCTGCACGC
TGCTGGAGACTCCACACCCCACCGGAAGATGCCTCCTGGACACTAGCTGGCCGGGCGCCC
GCCGCGTTGCCTTGCTTGCATAGTGTTGGAGTCATTAACGCCGTTGATGAGCAGTCTTGG
CTGACACAATCTAGGGAGCTTAAGCTTAGTAATATAATCACAGCACAGAACTCCATAGCC
CACGTGAAAGCTCGTGAACGACCAGCGATACAGCTGAACTCTCCAGATGCGGGAGTATTC
TACTTACTGCTGCATCGGTGAACATGGCGTGGTGGTACTGCTGCTCCAAATCTGGAGATC
CAAAGCGACGATGGCTAGTCCCCAGGTGGCGACGTCCAAGAAAAGAATCCCAGAAGCGTC
AGTGGTCGGCCGCCTCCCCTCTCGTGGTCGTACTCGTACGAGTACAAGAATGAAGAAACT
GAGCGGCACAGCTACCACCTTGACCGCCTTGATGGCGGCGGTGAGGCCACCCTCGGTATG
AACTGGGAAGGCAAGGCTCACCACCAGCCCATGCGCCCACTTGGCTGGCACGCCGGCCAG
ATTATGGCTGCTGTACTGTTTGTTGTTTCTTTGTCCTAGCGACACTAGTGCGGCACTGTT
AGTGAGGATGGACAACCCTTGTTTTCTTGTTTTCAAAATTTCAGCATAAACCAACTATAG
ACCTTCTTTTATTTACTACTACTTCCTATATTTTTTTTAAAAAAGTTTCACTACAGATTA
CTACGAATGTATATAAACATGCTTTATAATGTAGATTTGTTTATTTTATTCTATACGTAA
GCCTCTAATAAAATCTTTAAAGGAAATTATATTTAAGAGCTGAAACTTGGATATCCCAGG
ATGATATCCATAGTCCTCCAAACTCGAAAGGAAAATTTATGATATTTGCGGACAAGCCTG
AGAATTCGCGGGGGAGCTTTCGTGTTCCAACGGCATTCAGTTTGGCGCGTTCAAACCCAC
ACGAGCCCATCGGACGATGAAGGTTCACCGCCACATCCGCTGCTAATCCACAACGCCAAA
CCTCTGCCACCTAGGAAGCGACACGTCGCCGCCGGAGAAGAGAAGGGTGGATAAGTAGCA
GCAGTGAGGAGAAACAGCGGTCGCCGTCCGCCGTACGTGTGAGCTCTGCACTCCGATGAC
TGGTTGCCACATGGCTGCCGGCAGCTCGTCTCGACGTGTCACTGCGGCGTGCCAATCCTA
TGAACAGTCCGAGCACCTCCCGGAGTTTCTGCATGTTTGGCCGGTGGTCGGTGGCCGGAG
TACGACCAGTGCACAGACGTACGACGGGTCCAAAGCGACGGTTACTACTCCGGCTCGCCG
TGGTGGTCGGCCGGCCGTTTCCGCGTGGCACGGCACAAAAAGTCAGTGACCGCCGCCCCC
ACGCCACTCGTGCAGCTCCCTTGACCGCCGTAGCACCGGCGGTGAGCGTCACCATCGCCT
CACCCTCACTAGCGCTCACATGGCACCATACCGCCACCTGGCGCTGCCGACTACGCCTGG
GCCCACCCGCCAGCCACACCCACCGCTTTTCCCACCAGCTTCCTCCCCCACCCACACGCC
TCCATGCCTGGCTCCGTCCACACGTGTCGCGCCGGCACTGGCCGAGCACGCTCCCCCGGG
CGCCTATAAACGCAGCCCCCCCAGCCCAAGGTTTCCTCGTCTCATCCAGCATCCGGCAGT
GCTTGCAGAAGTTGAACTCGAATTCAGCCGAACAATTTCTTGGGGCTTTGAGAAAGAGAG
AGAGAGAGAGAGAGAGGTGGAAGGAGGAAGAAGAAGGGGAGCGGGATGGGGATCGTGGAC
GTGGTGTCGGAGTACTGCTCGCTGCCGCGGACTCGCCGGCACATGAAGAAGCGGAAGCAG
TTCCAGACGGTGGAGATGAAGGTCCGGATCGACTGCGAGGGCTGCGAGCGCAAGGTCAAG
AAGGCCCTCGACGACATGAAAGGTACCGCACCGTCCACCATCGAACCTTTCTTCTTCCGG
CCGAATCTGATTCCTCACACATGTTTCTCCATTGGCGGAAAGAAATCCAGACCTGTGATT
CGTATTGAGAAGAGAATCTTTCCTCGGCTTCTTTTCCTTCTTTGGCCAGATCTATCTTGG
GTGGCACTTGGCAGGCAGCTTTGCTGAAAGTGTGTGTGTGTATTTACGGTTGTTTGGTTG
GTTGTGTGTGTGCATGCAGGCGTGAGCTCGGTGGAGGTGACGCCGAAGCAGAACAAGGTG
ACGGTGACGGGGTACGTGGACGCGGCCAAGGTGATGCGCCGGGTGGCATACAAGACCGGC
AAGCGGGTGGAGCCGTGGCCATACGTGCCGTACGACGTGGTGGCGCACCCCTACGCCCCC
GGCGCCTACGACAAGCGCGCGCCCGCCGGCTACGTCCGCAACGTCATGAGCGACCCCTCC
GCCGCGCCGCTCGCCAGGGCCTCCTCCACCGAGGCCAGGTACACCGCCGCATTCAGCGAC
GAGAACCCCAACGCCTGCTCCGTCATGTAGCCTCCCACTCTCCCTTGTCTCCGGCCGCCC
GGCCACCGGCGACCTTTTCTAGCTTGCCTGCTCTGCTCTGCTCTGCTCATCCATGGCGGC
GTTGGGTGGGAGGGGTCTCTAGCTAGACAGTTCGCTGGCGTTCTCCTGTGTTTTTAAAAA
AACTAGACTAGACTAGTAGAAGATATGTATTCTTGCTTCGGTTTGGTGTAAGATATGTGG
GATTCGGTGAGGAGGAAGCTCCATCAATCTTGTTGTTTATGAGCAATGTTCCCAATCAGT
GAATCAGATGAGCGTTGCACGATTGATTTGCTCACCTTCTCAAGAAAGAAAAATGAATGA
TTTGGTGAATGAAAGAGACCCTGCACTAGTTAATCAATCAGGAGGCAGGAGCGTGCTGTT
CCTGTTGGCAATGGAGCTGACAAGTCCCCTTGACCAACACTTATTCCTAGCCAATGATAA
TCACGATCTTACTGTTCTGAAACTTGGAAAAAATGTCTGAAGTTGCCCTAGCACAACAGG
CCAGATCGACACCAAACTGAGATCGGCAACATGTTGCTCTGGGAAGATGACCCCACTCGA
TCTGGAGTTTCTTGTGCATCACTCTGCCTCAATCCCACGATACTACAAGCCGCGGTGACA
AGTCTCCTTGACCAGGAGTTTATTTTAGACAAAGTTAATCATACTACTACTAGTCTTGTT
TTAGGACTTGGCTAGGCTAGACAAGTGTCAAACTTCTACATATATGAGATGGTAAAATGT
TTGAAGTTAGTCAAGCAAAATATAAGGTACTCCCTCCATCTCAGTTTACAAATCCGACAC
ATGTATCTAGGTCGTCAATTTAATCAACTTAATAAGAGGCATATCTTCCCTAATAATAAA
GCGTGCAACGCTTCTGTCGTCCGTCGTGGTACTTTTGCAAAAACACCCCTCGCGTTTTCG
CTGTCGTGGTACTTTTGCAAAAACACCC