morexGenes - Barley RNA-seq Database

Contig contig_41015
Source Contig contig_41015
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_41015 (6488 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_41015

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_56635	1	736 bp	None	Available	Available	None
MLOC_56636	3	1354 bp	None	Available	Available	None
CDS Structure of MLOC_56635

CDS Structure of MLOC_56636

Contig Sequence (6488 bp)

>contig_41015 6488 assembly3_WGSMorex_rbca.fasta
GAGCAGGGAGGTGCCGCATTTTCTGAAATTTCTATAATATTTTGATAAATTGTTATGCAT
GTGCTCAAATATATATGTGGGAACCACTAGGGATCAGACTACAGATCCTAGCTTCCTATC
AGGCCAATATTGAGTCGTTGGATGGAAGCATGTATAGCCGTTGGATGGGCAGGGTCGCCT
GTGTGCACATAGTGCGCAGTTTTCAAATAAAATTAAAACTTGATGGAGCTAATTACGTGG
ATTTGCTAATAACTACACCCGTTATTTAAGAAACCAAATAAATGTTTCCATACATTTAGC
AAACTAATTTTGAATAGTAAGGACTGTAATAATTGTTCCAAATTGGCATTCTACGAGATA
TTGTTCGTGGCTTTACAAGAAGGTTTTGTTTTCATTCTTGAAATTTTTGTTTCCATTCTT
ATTCACTTTTGCTTCCGAAGGAACTGCGTCGAGATGGGGGTTTTCCACAGTAATTTATGT
TTCCATCAATTGAGGAATTAGCTNCCATTTTTAGGTCATGCAGTATGCTTCCATATGTAA
AAAATTGTCTCCAAGTGAAGTGTAATTTCAATTTGCTTCTTATCTAGAATATCTTGTTTC
AGTTGTCCAACAAGATTACGCCCAACACATTTGGGTACGTAGTTCGTTTACGACGTAGAA
AATAATATGCTTACTTCTCCAAAGAGACAAAATAATCTGCTTACACAAAAAAATAGGGTT
TGCTTTCCAAGTTACAAATACTCTCTCAGATCTAAATTGCCTACAAAAAGAGAATAAATT
TTGACATGGAAGAAAACATTATTGATTTTTTCTTATCCAATGAAAAAATGCTTCCAACGG
AAATAGTATTTGCTTCTTATGATGCCAGAATTTGCTTCTATGTACAAGAATGGTCAAGGG
GCTATCTTCTTCTCGGCACAATGTCACTATGGTCCACCGTGATGCTGATTCCACATCCGC
AAGGGGCACACTGGCCAGACCATGGAAGCACCCACACTGGCACGCCTCATGATTATACAT
AGAGTAGACGTGTAGGCGGTGTCGGCATGGAAACGGTGGCTACAGACAACGTAGACGCGT
GGAGGATAAACATGCATTAGGGGCTCCCCGTGGAATTCTCTTTACCATTTGTGAATAGTA
CTGTGGAAGATGGTCGTGGGCACGGCAGCATGCCGAAAAGATCGAGCGTGGTGGCGGGAA
CGGTGGAGCAAGGCCGTGGAGACCATGCGGGCCTGCCATCCACCGGTGTTGAATTTGTTG
CTCTGGCGGCTACCTCCCACAGAGTGTCTCCACCTCGCCGCCACGGTATGAGGGGACAAG
ACGATCTCGCCATCGCCGAGGCTTCCGGCGGCATGAGATCGAATCGGCTTGTCGGGAGTT
GTCGGCGCTTTGCATTTGACGAGACCAACCACGTCGAGGAGAGAGATCGGTAGTAGCAGG
TTAGGGTTTGGTGAACATGGGATGGGGGGATGAAGCTGTAAGAAGGATATATATATGGCA
AATACGTGACGTTGGATGGGATCGACGGCCTAACAGACGGCTGGTGATTTCCTCCTATCA
GTATACTGATGGAAAGCGTTTTCTTTTAAAAAAATAGGAGGACTCGGGCTGAGCTAGACT
AGCTACATATGCTCCCCTCGAATCAGCTTGTTTTAGATCTCCCCACGAATCAACTAAAAT
CAATTTACCACCGCAATTTTTCGCCTCCGGTTGGGCTTTGGTTTGGTAGTATACTGATGG
AAAGCCCAGCCCGAAACCCGGCCCAACCCTTACATATACCACTAGTACTAGCTAGCTACA
TGTGGCCAGCCCTTTGAATTAAGTAGTAGAGTAGCTAGCAACATCACTTTACCAGCACAA
TCCTTGGCACAGTGGCATCAATTAGCACTGCATTTTAGCAGGTACACTTAACAACACATC
GAAACCACTCCCCCATTCCTTTCCACCTCCTCCCCAATCCCGATTATAAACCCCCAACAC
CTCTTCTTCCCCCTCACGTCTCCATCACCTTCTTCCACTTCCCTCCATCAGCTCGCCATC
ATTCACACACCACCGCATGCAGTAGGCAGTAGCCACACTCCACTGCCATCGCTCTCACGC
ACAGACAGCATCACCGGCTTGCCTACACCGCACTCCCGTCGCTCTCAGCTGCCATGGCGT
CCTACAGGCTGCTGGTCATCCTCGTCTTCTCCGCGCCGCTCCTCGACGCCGCAGCCGCCG
ACACCTCCTACCAGGCCGACTGCCCCTACCCGTGCCTGCTGCCGCCGCCCACGCCGCCGG
CCTCCACCGCCGACTGCCCGCCGCCGCCCTCCGCGCCGTCCGGCTCCGGCTACGGGTACC
CGCCCCCGTCCTCCTCCGGGAACGCGCCGCCGTCGCCCTCGTACTGGAGCAACCCTCCGC
CCTCTGGCGGCTACATTCCCGGCTACTACCAGCCTCCCTCCGGCGGGGGTGGCGGAGGAG
GCGGAGGCGGTGGAGGAGGTGGCGGGAACTACGGGCCGGCGCCGCCCCCGCCCAACCCGA
TCCTGCCGTGGTACCCATGGTACTACCGGTCCCCGCCGTCCTCGTCGGCGGTGGCAACAA
CGGGGAGCGCGTGGGCGGCCGTGCTCTGCTTGGTGGCCGCCGCAACTGCCGCTGCTGCTC
TCGTCGGTTACTAGTACGGTCATCATCGATCAGTTACTAGCTATACTTTCAGTTCGTAGT
CCATCAATTCTTCATATATACTTGATGTATAAGATAATGGGGTGCCATTATTATTAGCCA
TGCATAATATCTACTAGTATCCATCGATGGTAGTACTCCCTACATATTGATTCATTGCTC
AGTTGGCTTTTGGGTGGTGAGTGGAGCGAGCAACTATATATTGCTGGTGCTGGCTAGTTT
TCTTGGGAGCATAATATATGTGGCTAGCTGGTGATCTCAAGAATCTTGTGCCTTTCTCTG
AGTGCCTCTTCCTTTTTCTTCGTGTTATTAATGTACTCGTCTAGTAGTGGCATATATACT
ACTCCCTCCGTTCAGAAATACTTGTCGCGTAAATGTATAAAATTATATGTATCTTACGTA
CTAAAATACATCTAGATATACATTCATTTCTACTCCCTCCGTTTTAAATATTTATCTTTT
TAAAGATTCAACTACGGACTACATACGAAGCAAAATAAATGAATCTACACTTTAAATTAT
GTCTATATACATCCATACTTAGTTTGTAGTGAAATTTCTTAAAAAGACAAATATTTATGA
ACGGATGGAGTATAATAAGTATTTTCGGATGAAGGGAGTACTAATTTCCCGTGTTGTGAG
TAGTAATTGTTTTGAGAATGCATGTGCAGTAATTGTCTCCCCGCCAAAGAAGAATGTATG
TACTTAGGCTAGCTTGACAATCGACTTGTGAAAATGTTTTCCAGGAGAGGTGCAAGGTTG
ACGTGGAAAGGCGGCTTTTCCCGGCCCGTGACGAGCAACTTCCGGAAAAAGTTGAGAGCT
TTGCGAGGTGCAGGAAAGTTTCCGTGTGGATCGTCGCTGATCGATCGGCATGATGCATGG
CGCCGGACAAGCAAGGAATCGATCAAAAGAGGAAGCGGGGGAAGGGCAGCGCGCAGCTGG
CTACGTTGGAGTTTGGGGGAAAGCAAGGAAACAAGATAAGTACTGTCAGGCTGAGTAGCT
AGAGCATGCATGGTGACCATCGATTATGCATGCTAGCTAGCTAGGGCGCCGATCGGGTGC
GTACATGCGTACGTACGTGACAACACGCATGCTTGGCCTCTTCGTGTCCACCGATCGACA
CCACCGCACCGACGATATGTACCATCGAAACTAGTAACACATCACACACGAGGCTACGTA
CCTAGCCGGCCAATCAATCCCGGTAGCATATATATCCGATGAAACGTACGTACGCACCTA
GTCATGCATCCTCTCGAGTAATTAAGTACTCAAGTCCCGTTTTGCCTTTGCACGCAAGCT
ACTCTTTGCATCGGATCGACGAGCCAGTCGTTCAGACCAAGCGATGGACTATAGCTTTCC
ACCGGTCGATCCACATCCACGCAAGGCCCCCGATCCAAGACGCGATCAAAGCTGCATGCA
CCCTCTGTCTTCTTCTTTTCACTGCGTGCACATGATGCACTTCCGTCTGTATATGGCCGA
TGTTTCGATGAGATGATGATCAAAAGTGAACGCTGGTGGCTGCCCAGGTAGCTAGCTCGG
TCGTGGGGATGCTGGTGGCCTTGCATGCATGCGCGGTTGCAGTTTCCTGCCAAGTTTCGC
GCGCACAGGGCGGCCGCGGATGCAAGAAAAGAAAGATAGAAACTAAAGAGGAAACGAATA
AAGAGTATTGGATGCTAGCTAGCCATTCACGGCGGCCGAAAAGAAAGAGCCTAGATCGAT
CATGTCCGTCGTCGTTAGGTGGCGCCTCCTCTCCAAAAGCTTACTAGTGTGGGAGTAGTG
TGTCCAGCTCCATACGTACGACATTTTCTTTTATTGTTAACCGGAACGGAACAAAAGAGT
GTGTGCGTATGTGCGCGTGAGAGGGCATCGAATTCGAATCGTCCAGTGGCATATGATTGG
GTTCCTTAGCCACGTGAAAATCAAGATGGAGCATCTGACAGAACTCACTGCATGTGGATA
CGAGCTCAAATCCCGTTTCAGCTTGAGATTTTCATTGTTCACTATTCTCCATTCTCCTTT
GTTTTCTCTTTTTCAAAACAGAGTCAAATATCTGAGCTCCTCTCCCAGCTGCAACTCAAC
TGTGAACTGTGCCGCCAGCAACTCCTGCAGACCACCCGCCGGTGATTACGCTCACTCACG
TTCTTGCTCGTACTATCTTGTTTCCTATGTGCGTACACCGAGCGGCGAATCTGCGTGCGC
GTACTCCGCAGAGAATGATGGATTGATGGATGGATGGATGGATGCATGGGAGGAAAACGA
TGATGGAGCACACGTGTGGAGGCATGCATTAATTCTGACTAGCTGGTCACCAGATCCGAG
GGACGTCTCGTCCATGCCGTAGGCGCGCGCGTCTCAATGAAAACTCGATGCACGCACAAG
AAAATTATGGATCATCCACCACCTACTCCATCCATTCCACACAAGCTGAAAATTCTGCCT
CCAGTCTAGTATATACCCGAACGAAATCAATCTACCTACGCCATATATATGCATATCCCG
CTGTTGATTGATTGACCACCTGTAAGGTTGTAAGGTTGTGAGTATACATGCACAAGCTGA
GCTAAATGCGAAAATCCATTTCTTAGCCCATGCTCATTTGCACCCGTGCTTATAATACAC
AAAAAAGAAAATAAATAATAAAAACAGGAAAATTCTAAACTTTTTTGTATCGTATATAAT
TTGATGCGTGAGGTTTTCTTTAATTTTTTGAATCGTTTCGACATCTGATCAACTCCTTGC
AAAAAAGACAAATCAGGGGCTTCTATTTTTTTTATACTGTTCACGTCCTTTTGACCTGAT
TTGTCTTTTGTCCCGAGAGCTATTCAAATGTTCAAATGATATGGAAATTGAAACCGACAT
CACGTAAGAACTTATCTACCAGGATAAAAAATTATACCTTTTTCTGAATTTTTCTGTTAT
TTGTTTTAATATATTTTTTGACGGGATGTAGGGCGCCGAAACGGTACATTTAACTAAATA
ATTCTATTTTACAGTGGTGTACAAGGAGGCGCATGTGAGTATATATGCACCTCCTCCTCT
TCTAATAGGACATGGAGACGCATGTGCGCAGCCTACGGATTCGCGTAAAGGCATTTCGTC
CATTTTCTAAGTGAGGACGAACAGGGTAGCTGGACGACCATGCCATGGCCATGTTTCGAG
AAATCGTCAAATCTGGCTGCCATGCCCCCATATCTCTCTAGATCTCCCCTTTTCTGCTGC
GTTTTACAGCATCCCGATTTAATAAATTCGTTCCCTCTAACACACGCGGATGCGTCTCTA
TGCATTAATTTACGGACATTAACCGGCCACGTTTTTATAGTCAGATACCTCAAATTAGAA
ACCTTACATCCATACAATTACATGCGACATAAATTGATTTTTAAGCGAAGCTCGTCCGGC
TTCATCATGCCCATGTCCAGCAGCTGGCTGCGTCCCTTATAGTGTCGGTCCGATTGCGGG
CGAGATAGAGTAGGACATGAGACACTAGCCGGCTCACGGGAGTCGAGTTCCTGCCGTCTC
CCATGCCCTACTGTTCCTCGTCGGAGCCCGTAAACCATGGGGTGCCGGTGGGCGTGAGCT
CGATGATGGTCCATTCTGGGACGAGCTAACATCCACCACGAAGCGGTTGCATCGCCTTCA
ATGGTTCATCATAAGGGGCGCTGGAGAGTTCGACTCCGCCTCTCTAATGTCTACCGCAGC
GAGGGCCTCCGCCGCTTCCCGCTACCTTGTGTTTGCGTCCTCGGTGCACCAACAGAGCGG
TTGTGCGTCTGCCACGTCGGTCGGACGTCAAATGAACCGCACGCCTCTGGTGAGGCAGCT
ACATCAGA