Map Locations of contig_40949 (10078 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_40949

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_56564 1 432 bp None Available Available None
MLOC_56565 3 438 bp AK375935 Not available Available None





CDS Structure of MLOC_56564






CDS Structure of MLOC_56565






Contig Sequence (10078 bp)

>contig_40949 10078 assembly3_WGSMorex_rbca.fasta
CCAGGACTTGAACTCAAGACCTTAACTCCGATACCATGTTAAGCTTCATGNNNNNNNNAA
CGCAACCAAAAGTCCGAACTGATGGAAAGGGCTAGGCAATCCACATATAGTGTAACAGAT
ATTATCTGCTTATTTTGCAACGAAGCTGAATCTGTGCAACACCTCTTCTTTGATTGTATA
AATGCTGATACCATTTGGTCAATCATATCTGAATTTTTTAAAATTCATAGAATACTATGC
TTTAATGATATCTCTTCCTTATGGAAATTGAACAAAAAGAAATTTGTGCTTAATCTGGTG
ATTGTTGCCTCCTTGTAGAGTATCTCGAGATTAAGGAATGAGTTTTGTTTCTAGGGACGC
ACATGGAGAGGTCTGGGCTGCGGTCTTGCCAAACTAAGAGGGATTTTGCAGCAATGGTTG
GTACTCTGCGACACTGCACAAATGGACGAACTGAAGCGATTCATTCTGCTGCTGGACAAG
CACCGGGGAGAGCTATTGCGGATAGCGTGGATTTAATCTGATCGATCTTTCCTGGTCTGT
AATAATAAAAACTTAGTCTGTTGCTTTGGTCCAGCGCGAAAGAATGCTTAGTTTTGAACT
TGTTATGTGGCGATGTAGTTTGAGCTAGCCCATTTCCGAGGATATTTCCTTGTGGTTATG
CCTGTGTTGAGGATTTCTTTGTTCCTTTAGGTGCTGGTAGTTGTGGGAGCTGTAATCTGG
ATGATGTCTGCTTCATTTTAATAAAATGGGGCAGGGGGAACCCCTTTCTTTCAAAACAAA
AGTTGTACTAGAGCTGCAACAATTATTTTGGATTGGAGGAAGTACTGAATTTAATAGGGC
TTCATCTACAACAAGGATCAATTTGTATTATTTGAAGAAATTTACGACTTGCGAATACAA
ATAAAAAGACAAGAGCATGGGATGTAACTCCTAATAATTTTGGCAGGTCTTGAGATATTC
TCTTCGTTTTCATAGAGGACAAGAAGCTTGTTCAAGTTCAAATATATGAGAAAAGACTCA
TTATCCACCTTTCAGGCACAACTACCATTAGAAAATAGGGACATTATCATGATGAAGACC
TAGAGAGGAGCAAAGACAGGAAATTATCAAGTTGCCTATTAGAGATGCAAGAATGGTAAC
GTAACTTTTCTCCCTTTTCCTGCTCAGTTATCTGAGACAAAGAATCTCCTACAAAAAAAA
TGTGTAAGGTTTTGTCGTCCATCCTTTCTTTCGCCCTCCATCCTAACCCCACCTCCGTTA
CTGGTTTTATCAATATTTCGCACCGGTTTTCCTTGAGGCTCGCCTCAGCTGGTCCACATC
TTATTGGCTTACAACTAAAATCATGTTTTCTTTGGCAAGTCAATAAGTACTGGTTCAATT
GCCATTTTTGGTACGTAATCACATTAACAATAAAATGACTAGTAAATCACGATGGTTGCG
TACAAAATATTTGTGCCTCCATTGCAACGCACGGGTAGTTATCTAATTCCCTTGGAAAAC
AATATGACAGAAATTCAAGCAATTAATGGCATCAAGCATCTAAAATACTGAAACTCATTT
ACAGCTATCAAGCGATTCTAGAAGAAACTACAATTAGACAGACAATTATAGACAACACAA
TAAGCCATTAAAAGGATTTCAGAATGTGTTTCAGAATTTCACATCGCAAGGTACCTTATA
AAGCATAGTCAACTTCCGACTTGATGGGTCTATATGTGCACCCACGTGATAATTTGCAAT
TCCCAAATCTGGAACATGTTGGTGCTGATCACCATTTTTATTTGCTAATGCAGTTAATTC
ATGAAAATGAGTTGCAAACAATGTAGGCGCCCTAGTCACTTCCACAAGATGCTCACAGAT
AGCCCATGCAAGACCTGATGGTAGTAGAATGTAACAATCCAAAATATGAGTTAGATCTTC
AAGTTACATTAAATAAAGTTAAATCTTCCAGTTGCCTACAATTTTGGCATACTGCAGTAG
TAGTAGTATATGCTAAATTTAAGGCATGGAATTTTGGTCCAAACACATGTAACCAATTAC
AGAGTATAAGATGAAACGCCAGTAGAATGAACAATCCTCATGTAGAATGCTTAGTTCAAA
TCAAGTTGCAGTAAATATCATTTTAGAAGTTAATATTTGCAGAACTGTGGTGGGAAATAT
ATGTAAAACAAAATATTTAGTTCAAAGCAAGTTGCATTAAATAAGATTTTAAAGTTAATA
TTGCAAAATTGTATTAGGAAACAGAGATTAAGAAACTGGATATGCCGTCTGATCCGTCTT
AGGTCCAAACATGATAAAAAGAAGTGGGAAGACAAAAATCAAGAAAGGGTTGCGAGACAA
ACCAAATCCATCATATGTGGAAGTCCCGCGTCCCAACTCATCGATAATTATGAGAGATTT
CTCAGATGCACCTTTCAAAATGGATGCTGTTTCAAGCATCTCTTGCATAAAGGTTGAAAC
ACCACGGAGCTGCCAACAAAAATGTAAAAGTGAAATATTTAGAACTTGAAGGTTTTGCAG
ATCTACATAGATGAAAGCCTGTTCAAAAGTAACAGCAAGTTTTGACCTAAAATATCCCGA
GCACCAGTGATTGGTCAAATTTAAACAGGTAACATATAAAAGATCATAGTCATTGACAGC
TTCACATATGAATTTCCCCTCTCCCCTGCACTACTAGGTTACTGTCATTTATGTGGCCGT
AAAGTGTCTCACCATCCTAGCCCTCCCCTCTCCCTTATGGAGCTGGAAACTAAGAAGATC
CTGAGTCTTTTGTTTGTTTGTTTGTTTGTTTTGTGAGGACATCCTGAATGAAGCAGACAA
TATTTTCAAACTTCGAGATTAAACATAATAACATAGACCAAAGCCTGTTCAAAGGTAACA
GCAAGTTTCGACCTAAAACATACCCACCACTAGAATAAAGTTTGACAAAACCACGGCACA
GGCTGCACCCCTCTCTACCCTCAGATTTATATTCAAGATCCATGCCAGGAAACATTACTA
AACCATTCCTCCTAAGCTTATGCACAATTATCTGTTAATCCCAATGGGAGGAAACCAGCT
GCAACAGGTCAGAGTTGAACATCATAATCAAAACAGTCCATGGACACAAGCCCCAAACTT
TATATAACCGATCATAGCCCCAAGGACTGGGCTTTGCTTGGTTTGGGAATTATAAAAGCC
ATACCCCATGCTACAGTACCACACCTTTGCCAAGTAAAACCACCTCTTAATCTCACAGAT
TTGCACATAACCCAGAGCTGTCCATTCTGAAATGTGAAGCATCCAAGACTGGAGCACAGG
CTCCATGGTTCTACAAATCCTAACATTTATACAGATTGCAGTCATTGACCAGGTCCAATG
ATCCTTTAATTTTGAAAAGGTCAAAAGTGCACGGCTAAATTTTGAAAAACTCCAAAAAAA
ATATTGTACATATAGATTTGTGGTACACAATGCGAATATGCCAATTATCATGGAAAAGTG
CCTTCATTTGCGAGCCACAAAAAACATGGCAATCTCTGATGGCAAAGAGTAGTGCCATCG
TTTACTACTATAAATCACTGGCCTTACCATGCAGCCCACGAAGATCTTTCCATGAAATTT
TGCAGATTCATAGTAAATAAAGACACTTAAAAAAACAAAATAAACGGATCACTGGAGCTC
AAAACCAAAAACAAACACTCAAATGAAGGCTACCCATATTTTCTTTAGAAATTTAGTGCA
CTTTAATAAGATTGGAAGATTTAGTAATACTTCAGAATTTTTTTCTCAGTCCACCAACTG
TAGCTAACATAGACATCAGAAGAGACAGTTTTGCACTCTCATATTTTGATGTGTTTGTTC
TTGTTGTCATAATGTAACACCCAGTGGGAAAGGGGAAAGGATCAGATCGGGGGGTGAGGG
GCAGAGAGGAGAGAGACGAGACTTTGAGGAAAAGTAGGTGGGATTGCAGAGGAATCTTAG
ATAGGTTCAGAAAGTCTCATACAACCCACGCCTCTCTCGCTGCCACAAGCGGCTGCTTTA
TAACCCTCACGCCCACACACGCTAACTCCTGTGCTGCCTGCTCGCATGCCAGGTCACACC
TGCCAGGTGTGGCCAGGTGTGACATTCTCCCCTCCTTAAGCATGTTCGTCATCTTGGGCA
CTGTGGTCTTCTTGGTCCCAGAGGGTCGCCGGTGGAAAGCGTTATCGAAGCACCTCATAG
TCCTCCCAGGTCGTGGCCGGATGTGTGCCCGCGCCCCATTGAACCTTGAGCTGTGCAATC
GCGACGTTGCCCCGCTTGGTCATGCGCTGCTCCAGGATCAGTGTTGGTTCCATCATCGAT
GTGGACAGGTCCAGAACGCTTGGCAGCTCGGCGAAGACTGGAGTGTAGTCAGGCATGAAC
GGCTTCAGCTGGGAGACGTGGAAGACGGGGTGCATCCGGCTTGTGGCTGGCAGGTCCAGC
TTGTACGCCAAGGGCCCGATCTTCTCCAACACAGTGTATGGCCCGAAGAACTTGAATGAG
AGCTTGGTGGAGGGGCGACTGACGACGGACTGCTGAACATACGGCTGCAGCTTCAGGAGA
ACCTGCTTCCCCACGTCGAAGTGACGCTCGGTGCGATTGCGATCAGCTTGCTTCTTGAAC
CGCCGCTGCGCGCACTCCAGCTGTGCCCGAATCTGCGCGGTGTGCGCCGCCCAGTCCATG
TCGTCCATGTTCCCATCACCCCCAGATTTGCTTCCTTGCCGTAAAATGCCTTGAAGGGAG
TGCAGTTCAGGGACGAATGGAATGTGGAGTTGTACCAGAATTTCACGTGAGCAGCCATCG
ACGCCACCATGATGCAACGGAGACACATCTCCATGCACTGGTTGACGCGCTTGCTCTGGC
CATCGGTCTGCGGGTGGTACGCCGTGGAGTAGAGCAGTTTTGTGCCCGCACCGGCGAGCA
ACTCGCGCCCGAGGCTGCTGGTGAAGACCTTGCCACGGTCGGAGACGATGATGGAGGGGA
TGCCGTGAAGCTTGACAACATTGTCCCAGAACGCGCGTGCCACCTATGCCGCTTGAAATG
GGTGGCGAAGAGGGGTGAAGTGGGCTAACTTGGTGAAGCGATCCACGACCACCATGATCG
TGTCGAAGCCCTCGGGAACCGGCAATCCCTCCATGAAGTCCATTGTCAGGTCCTCCCATG
GAGCTGTTGGAACCGGCAATCCCTGTCGGCTTGGAGTGTTCGTGCTTGATCTGCTGACAG
GTCAAGCACTGCTGCACGAACTCCTCAACGTCCCACTTCAGCCCACGCCAATCGAAGTGC
TTGCGCACTCGCTGATAGGTCGTCGTGGAGCCAGAATGCCCGCCCAGGCGCCAACCGCGT
TGTTGTGCATCGCGGCAATGAGCTTGGTGCGGAGCGTGGTGTTGGCGTCGATCCAGATGC
GTCCGCCGCGGCATATGACGCCCCGGTGCAGCTCATAACCATCGGCGTCGGGGCTGGTGA
TGGCAAGCTTCTGCAGGCAATCCTGCGCGTCGGCGTCCATGGAGTAGGAGTTGACCACTT
CCTGGATCCATGCGGGCTGGCAGGTCGACAGGGCGGCGAGATCCAGCTGCTTGCCCACTC
AAGAGAGCGCTTCTACGGCGCCGTTGTCTAGACCGCGCTTGTACTGGAACTTGAATTGAA
GGCCGACGAGCTTCGCCATGGCCTTGCACTGCAACTCGGTCTCCAGGTGTTGCTCACCCA
AGTTGCAGAGCGACTTGTGGCCGGTGAGGATGCCGAAGGGCGCACACTGCAGATATGGGC
GCCATCTGTCGATCGCCATCATCACGGCGAGGAATTCCTCGTACGTCGACAACTGCTGAT
TGCAGACGCCCAAAGCCTTGCTGAAGAAGGCGACGGGGTGGCCGTCCTGGACCAGCACCG
CGCCCACGCCAGTGTCACCGGCATCCGTTTCGATGGCGAAGGGCTTGTCGAAGTTGGGCA
AAGCCAGCACTGGAGTGGTCGTCATCGCCGTCTTGAGCATATCGAACGCAGCCTATGCTT
GCTCGTTTCACGCGAAGCCTTTCTTCGTGAGCAGCTGCGTGAGGGGCTTGGCAATGATGC
CGTAGCGAGGTACGAACTTCATGTAATGGCCTGTCAGGCCAAGGAATCCGCGGGGCCCGG
TGGCGTTGGTCGACGTCAGCCATTGCTCCATGGCCTGCATCTTCTCCTTGTTCGTGGCCA
CGCCCTCCTTGGAGATCACATGTCCGAGGTAGACGATGTGGTCGCAAGCGAAACTGCACT
TCAACTCCTTGACGAACAACTGGTGCGCTCGAATGAGCTCGAAGACGATGCGCAGATGCT
TGAGGTGTTCCTCCATTGTTTCACTGAACACGAGAATGTCATCCAGAAAAATGATAACGA
ACCTGCACACATGCTTACTGAATATGGCGTTCATGAGACATTGGAACGTCGCCGGCGCGT
TGGTGAGGCCGAATGGCATGACCTGGAACTGGAAGTGGTCGTGGTGCGTCTTGAATGCGG
TCTTGGCTTCATCTTCTTCGCGCATGCGTATCTGGTGGTACCCCGCACGGAGGTCCAATT
TAAAGAACACCGTTGCGCCAGCCAGTTTGTCCAGGAGTTCGTCGACGATGGGCAGGGGAA
ACTTGATCTTGATGGTGGCGTCGTTTAGGCAACGGTAGTTGACGCAGAAGCGCCACGTCC
CGTCCTTCTTAACGAGCAGCACCGGCACGGCGTAGGGGCTGACGCTATGTGTGATCACCC
CGGCATCCAACATCTCCTCGACCTCAATCTCGTCCTTCTGGAGGGGCGAGTAGTGGTACG
GTCGTGTGTTGGCAGGTACCGCGCCCTCCACCAGAGTGACCGCGTGGTCATAGTGGCGAT
GGGGAGGAAGGCCGCACGGCGTCGCAAAGATGTCGGCGAATTCATCGAGCAGGTCGGTGA
GAGGAGTACTGCTGACGCCCTTACGTGTCGGGGGAGGGGACCGGCCACCAATGTCCACCA
GGGCCATGGCCCAAACGTCGTTGCCCGCGATCATCTTGCAGAGCTCCTCCGGTGTTGTGG
GCTTGAGCGTCAGGGTTTCTGTCGTTTGCATGCCGCGGAGGGTGACCACCTCATCGATGT
GCTGGAACTTGACCCATTTGTCTTTGCCAGTGGCAAATCATGGGGCTGTGTTGGGCTAGC
CAGTCCATCCCCAGAATGTCGTCGTACGCTCCAATCTCCAACTCGCGCATCGGTGCGGAG
AAGGTGTGCCCCTGCATCCACCATTTGAGCTCAAGCACCATGCGGTTGCAAGTGAGTCGA
TCTCCATTTACCACCTGCACATCCACCGGCGCGATGTCCTCTGTCTTGGCGCCAATCCGC
TCAACAAAGGATCTGTTGACGAAGTTGTGGGTGCTGCCAAAGTCGAGCGGGAGCAGCATC
ACCTGATTGCCCACCGATGCACGAAGGCGGATGGTGGTGGACGAATCGGTGTCGTCCAAT
GCATGCAAGGATAGGAGACAACACTCCGATGCATCCGCGGGACATGCCGGAGAAGGAGCG
CCCGGGCCAGGATCATCCAGCAGCTCCATCACATGTATGGCGTCGTCGGAGAGGAACTCG
CCGTGCTCACCCACGCGGATGGTGAGCAACTCGGCGGGTTGGGCACACTTGTGTTCCCGC
GAGTAACGATCGCCCCACTTGAAACACAAGTTGTTGGAGCGCCAAAAGTCGCGCAGCTGC
CGCTCGCGCGCTTACTCATCCCCTTGTGTGCGAATTGGCGCGATGGCTCGTGGAACCTGT
GTCGGGCCGCCGTTGGAGGTCTTCCTGGTGGGGGCATGCGAGGTTTCGCCCGCGTCGTGC
CCAGCTCCTCCTCCAGGATGCGGGCCAGCACAGAGGCGCGCATGATGCTGGATGGTGCTT
GGAGACGCACCGCGGCGCGGAGTTCATCCTTGAGCCCCAAGAGAAACTGTGTGACGAAGA
ACTTGGTGTTGATGGTGGGGTCGAGGGCAAGAAGATGGTACATCTGCTCGTCAAACGCGG
CGTGGTAGTCGAAGACAGTGCCGGTTTGGCGAAGCTGCAACTTGTGCATCACCAGCTCGT
ACTCGTTGGCGCCGAATTCTTCCAGCAGGGAGGCCGTGAACTTACCCCACGTGATGCCGC
GATGTGTCTGACGAAATGCCTGGAGCCAGTGCGCGGCCTGGCCGTCGATGTACAGAGCCG
CGGTGGCCACCCAATTATGTGGCGATCAATCCACAATTACGGGGCCAGGCGGTGACCAAT
CGCCGCCCCGTAATGCCTAGAGCTCAAAATAGGCCAGGCGGCGATCAATCCACAATTACA
AGGCGGTGCCTTCGAACCTTGGGAAATCATGCTTGGGTGGCTTGTGGTGCTCCCTATTGG
TGTAGAACACTGTCAGCAATCGGAATTAGGGGTGAACGGTTGTCCCCCAACCGGACCTGC
GGTCCTGCCGGACGAGCCGGAACCGGAGGGCTGCGTGGAGGTGGGGTGACGGTGGTGGTG
GTTGCGGCTCCAGGGCTTGGTGGACCATGGTGGTGACCGATCCCGCGGTGGACAAGGATC
GCTCAACCATCTTGCGCGTCGCATCGACGTCCGCCCGCGTCAGATCGATCTGCTTGGCAA
GGCTGCGGAGCTCCTGGGAGAACTGGTTGTTGAAGGCGGCTTGGATCTCGATCTGCTTGT
CGTGAAGCAATTTCTGCTCGTCTACCTTGGTGATGAGCGACTCCAGCAGCTTGGTGATGT
TGCCGTTGCCTTCATCCATCGCCGCCGGGATTTGTCGCGTCGCCGTCGAAGGTTTCTGGG
ACGCTGTTGTCGTTGACTGGGAGAGATCAAACCCCGCGACGGATTTCGAGCGAGCCGACC
GGAGTGGCTCGCACCGACAAGGTGGATGTTACCGATCTGCTCACCAAGACGGGGGAAAAA
TTCAGCAAGATTTGGCTCTGAATACCAACTGTAACACCCAGAGGGAAAGGGGAAAGGATC
AGATCAGGGGTGAGGGGTAGAGAGGAGAGGGACGAGACTTTGAGGAGAAGTAGGTGGGAC
TGCAAAGGAATCTTAGAATGGTTCAGAAAGTCTCATACAACGCCCGCCTCTCTCGCTGCC
ACAAGCGGCTGCTTTATAACCCTCATGCCCCCACACACGCTACCTCTTGTGTTGCCTGCT
GGCATGCCAGGTCACACCTGCTAGGTGTGGCCAGGTGTCACACATAACTCTAACCAAAGC
AATAAATAAAAGGATCATACTGCCTACGCCAGCACCCACATGGCTTCCCCTCACCGGCAC
TATGGACCTCCCTTGCCAATCCCTCCTGGAGCCCCCCTTTGCATCGTCCAAGCTGTGCTC
GATGTTGGAAACCAGCAGTAGTCTCTGTAGGGTGATGTGCGTGACCAAAAGCACCAGAAG
GGATCACACACTATGCGTTTACCCAGGTTCGAGCCCTCATGGTTGAGGTAATACCCTAAG
TCTGCTTGGATTTGATTGATGGGCCGCCTTGTATGAGGGAGCTATGATGGAGTTGAAGTT
GATTCTACCGAAGCTAGGGTTGAAGATTGTAAGGTATCTAGAACTACCATCAAACATCGC
CTTATAAAGGAGGACGAGGCCTAGGGTTACATGAATCATAGTCGATTACTACCGACCTAG
AGTGTGGCTCAAACTACGATTCCTCGCCTTGTACGCCAAGTTGATGGTCTTCTGGAAGGA
CCACATGCAAGATGATGCGGGGTAATGGGTCGGGGCCACGCTTGGTCCACTGGGCACCGA
AACGGGTCTAGTGAGCCGGCTTCCTCGCAGGTCGAATACCCCCAATACCTTTACCCTCAG
TAGCCCCCTAGCTTGTCATGAGTTCAGCTACGTCCAGGTTGAAGTTGTACTTTGTTAGGA
AAGCAACTTATCTTTATTGAAGGCCCAAGGGGCATATATATATTACACAAGAGTTGAGAT
GCAAGGAAAGTAAACATAGACTAACAAGGACTCCTAGACCAGTACTAATACTTCCTAACA
CCCACCAACCCACCCACCCTCAAATGCAAAGCATATGCAATAGCATTGCATTTGAAGAAG
TGTAATATTAAAAAAATGATAATCCAAATCCGCGTCTTGAGAGTGTCGCCGTAGCATG