Map Locations of contig_40936 (8538 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_40936

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_56547 1 773 bp MLOC_56547.1 Available Available None
MLOC_56548 4 1440 bp None Available Available None
MLOC_56546 1 274 bp None Available Available None





CDS Structure of MLOC_56547






CDS Structure of MLOC_56548






CDS Structure of MLOC_56546






Contig Sequence (8538 bp)

>contig_40936 8538 assembly3_WGSMorex_rbca.fasta
GTATGTCATGAACCTAGTCAATGCCATGTTAATAATTATTTCATGGATTAATCTACTCGG
AAAATTGCCTATTTATTCAACATATAATATGCTTACTGATATATGTAACCAAGAGAAGGA
TTGGGGGAGCACCACGCATGCTGGAACAAATGGAGTACAACCGAACAGAAACATCACAAA
AATGTAGGGAAAATATATCTACTAAACATTTAAGTAAATTTTTTGCAGAGATAATTGTGT
TTGGTGTAAATTGTAACTTGTTTCCTCATCTGTTGGATCAACTTTTTTCTCTATTGTCCC
TATCAAACACAATACGTGCTCTCTATATTGTATAATGGTTGTGTGCATCATATGGTCACG
TCAAGAGCATTTGAGCTCGGCATTTTCTTTTTGTTGGGAAAACTTTTAATCTATTCATCA
AACATTATGACATGAGCATTTGAGTTCGGCATTTTTTTTCTTGGTAAAACTTTTAACCTA
TTCATCAAACATCATGACATGAGCATTTGAGTCGGCATTTTTTGTAAAACTTTTAATCTA
TTCATCAAACATCATAACATCAGTATTTGAGTTTGCATTTTCTTTTTCTTGGAAAAGCTT
ATAATTTATTCATGAAACATCATGGCAGGAGCATTTGAGCTCGGCAATTTTTTTTTGGTA
ACACTTTTAGTCAAATCATGGTAGGGGCATTTGAGCTCGTCATACTCTCCCGGTATAACT
GAGTTAGCACATGTCAGCCTCATAGTGCTCCTGAGGTCTGCTTGAATTTTTTTTCTAACC
TGCTGCCAAATGTAGCGCTGTCGACATGCTTGGCGCACGGACTAATCAGTTGGAAGCTTG
GAGCTGACGGAAAAAGCAAAACAAATAAGGAAGTCGTGTCTGCTGGTTGACCCTTGATTT
TATAAGCACTCACTCAAAGCATCTATAGTCGGACCCCTCAAACCTAACTTAAACGTTTAG
GCTGACTGACACCCCTCATATCCAGTCCAAATATGAGACGGATATGTGAAAGCCCTGACG
CGTCCGGGCATGCCCGTCACGTCGGCCTGACGGCGTGGCCCCACACAGACTCGCATGGAA
ACCCAACAGCTCGACAGGTGCCTCGACCGTCGTTGCAGTGTGAACGCCGCGTGGCACCGC
TTTAGCTCCCCGCACGATGCCATAGCTGGCTATTTAAGCCGGCCGGCGTCCCATCCCTAT
CACATCCACCTCCTTCCTTCCGCCGCCACCACCCAAGCCCCTCCGCCTCCTCTCCCCCGC
TCTCCGGCCTTAGTATGGTCCGTCGTAGGATCATCACTTGTGCTCAACTGACGCCGGAGC
ATCGGATGCAGATCGAGGCGAAGATCCAGGTGCGGGCGGATCACTGCGGATCTCCCTTTA
GACTCGTCGAAAACGGAGGAGGAGGAGGAGAAGCAGCGGGAGAAGGAGATGCCGGAGGCC
ATGGAGGAGGAGGAGGAGGACCCACAGATCCAGGCTCTGGTCTTAAACATGGAGGAGGCG
GAGGCGAAATACGTCGTCGTCCAAGCTGAGGAGATGGCAGAGTAGTAGGCCATCCGGGAT
TCCATCCGGGATGAGGTTGAGGTGGAGGCCACGCCGGCTCATCGGACAGACGCAGACGAA
GTTGTGGCCCTCTACGCCGAGCTCGAGGCGGACATAGCGGCGGAGGAAGGCGTGGCGTGG
CAACCGAAGGAGCCGGAGGGGGCGGAGCTACACCAGCCGCACATCTAACCGTCGGAGGAC
ACGGAGATCATCGATATCACTGACCAAGAAGAGATATCTTGTACATAGTATGTAGGTTTA
TGCGTTGCGTGCACTTTGTATGGATTTAAGGATTCAATATGAAATGTCCGGATGTAGTAG
TCTGTTATTTAGGCATGCCCAATCAGTATCCGCGGATGTTTGAGGGACCGAATTTACATG
TTACGGTTGTAGATGCTCTCATTTACATGACCTTGTCATCGCCTGTGCACATTTCGATTA
GGCATTACGTCCATCCAACCCGTAAGCCGATCTGCTGTAAATTAATTCCTCCATTTCTAA
TATAAACAGTTTTATAAATTTTAATATAAAGTACATACGGTTTAAATACATTCGGTTAGA
CTCTATATTAAATCTCTAAAAAAGCTTTTATGTAAAAGTGGAGGGAGTACATTTCAAAAT
GAGAAGCGGCCACTGACTCTCTTTTTGTGCGGAAATGATAATACACGGAACTAGACTTTC
TTGGCCGGTAGTCGGTCAGGAATAAGAGCATCTCCACTTGTTGTCCATTTCAGGAGCCAC
TTTTTCTATCGGTTTGGTTCGTACCGATGAAAATTTTGACATAAAGAGAAAAAGGTTTTG
AGTCATGTCTTCACCCAATACAAGAAGACAAGAGGGATGAAAAAAAAAGAGATAAAGGGG
ATGAGAGGCATGCAAGAGAGAAAGAGGAGAGAGGAAGTGGGAGGCTGATAGTGGGCCTGT
TGCATGTAAATAATAACACCGGCGCTATCAGACATCCCAGACGCGTTGGGTTCGGTGTGG
GATCGACTGGTCCAATTTCGACATTAACCGATGAAAAACGGACTCCTAAGATGTGATCGG
GTATTTTTTTTCATCGGCGACAAAAGAAATGGCCTGGAAGGCGCGTGTTCAGGGTGCGGC
TGTAGATGCTCTAATTCTCCACGGGCAAATGGCAATCGTGGACGTACGCAGTGACGCTGT
ATATATATATATAGCGGGAGCGGGAGACGCCTATGTGCACCATCACCAGCTCGAGCTATC
TGCCAAAGCACCAGCCACCAGCTCAATTTCTTCTTCCTTGAGCTCACCCCGTTCCGAGAG
CACCGACAGTAGCAGATCATCGAGCAGCGTCGCCTCGCGGCTCCGGCGGCATGGCTATGG
CTTCGCCAACGCGCAGCGGTGCTAGCAGCAACATGATGAACAAGAGGTCGCCGTCGCGGC
TCCAGCCCCAGCTCGTGTTGGCGTTGTTCCTCGCCGTGCTGCTGTCGACGCTGCTCCGAT
GCTCGCCGTGCGAAGGCCGTAAACTGCCGTCGGCGGAGGAGGAGGAGCATCGCAGCAGTG
CTTCCGTGATCAGCTCCGGAGGTGGCCCGGCGCTCAAGGCGGCGGCGGCGGCGGCGGTGA
AGGGGTTCTCGAGGGCCGCCAGGTCCATGGGGTCCGTGCCGAGCCCCGGCGCCGGGCACT
AGCCATGGGTTTCTCCTCCTCCGGAGCAGACACGCATTTTTGCAGCGGGGAATGGGGCCC
TGCGCCATACATTTTTGCCCCTGTTCCTCGACTTGATGAGATCTTCGCTTTCATATGCGG
CGTACGAAATGATGGGGACGGTTTGTCTTTGTGTATCTGAATACACATCCGGCTGAAAAT
AATGTAAAACAGCTGGAACCTTAATCAACGCGTTTGGAAAACAACTTCGGTGTCTTATTT
GCCTGTCACGTCAACATGAGCTGCATGCACCAGCTGATGTTCCGTGGCCTTCCATTCCGT
AGCGTTGCATACTACGAACGCGTACGCTACGAAAGTTATATTAAAGTTAAGACACTTATT
TTAAGACGAAAGGAGTACATGTCGTTCGTCTCATCATCGGAGGACCTGTCAAGTGTGCTT
GTGGGCTTGTGGCTCAAGAGCAAACCGATCTGATAAAAACTAGTACTCAGAAAAATTAGT
ACTCAAAAAAATATCCTTAAAAAAGATTCTATAGGATTCATTCATATGAATCAGACAAGC
AACATAAAGAAAAATCATAAGGATTCTAATCCTTTAAAATTCCTATGAAAATCTTTTGAA
TCAAAAGATCGCTCAACATAAATTTATGTGGTCATGCATATGACGAATGTGCTATAGTTG
CCTTAAAGACCTCTTCCAATGCTTCATCTTGTACAGGTGCTAAGAACATCTCTAGAAGAC
CTCGTAAAAACTGATTTTCAAAACGGTTATCACAAAAAAGTGATAGTTTTCTGAAACGAA
TTACCATAAAAGTGGTATTTTTTATTAAAATTTAAAAAATAATAGTTTTGTAGGACGGCG
GCCCCAAAACTGGTAACTTTTTGTCAAATACTCAATCCCATAAAATTCGATGGAGACACA
CCTCCACACTCTCAAAAATGTAGAGAAACACTATCTAGTAAAATTTCAGTCAAAATGTAA
TCTTATTTTTCAATGTAGAGGTCCCAAATTCCTGCCGGTCAGATCTGGGGCGCGGCAGCG
GCGGCTACCATTTTGGCGCGGAGGGGGCGGCTCGGGGTCGTCTCAGGTGGTGCGAGGTAG
TGTTCTGGTCGTGCGGCAGCGGTTTGGGTGCTGCACGACCGGCGCGTGGCTATGTTGGAA
GGTGTAGCCCAATCTGAGCCAGTGCGTGTGGGTGCATGGCGCGGTGATTCACCGGCGGCC
GGCCATCCGCAACACCTTCTTGTGGCTGCACGTTGCCTCTCCCCGTGTGGTGGTTGCGGG
AGGCTCCGGCTCTTCGATGGTGGTTGTTTTCGGGCGGCCCGGTCTCAGGCAAGCGGGTCT
GCGGACGACGCGGCGGTTGGTGGCGCAGCTGGGGGAGTTCCGGCTCGTGGTGGTGCAGAT
TTCTAGGTCATGGAGGAGCAGCTCCCCTCCATCGTAATGGCTTGCCCCGATCTAGTTATG
TCGGGTTTTGTCCCTAATGTTCTTCCTCTGCCAATTCATCTTTCTTCATCTTTCTATCAG
ATGTTGACCTTTTGAATCTGGCAGCTGATGTGTTCCATTGAGTTGAGTTGGCACTTGGCG
CACAGACAGTGCATTTAAAAAAAAGCCTTGCTGCCAAATGTAGTTCTCTCTGAACGATTG
GCGTACAAAATAATCGGCACCATTTCACGGAGGTCAGCTGGTTGACCCTTGATTTTATAA
GCACTTATTAGAGGCTGCCGCTAACTTTTCCGGTGCTCGCCGTGCTGCTCCTGATCCTGC
TCCGGTGCTCGCGGTGCTGCTGCTGATCCTGCTCCGGTGCTCGCCGTGCCAAGGCCGCAA
GCTACTGCCGGCAGAGCGGCAGGGCAGGAGGACTAACTCAGCGGCAACTAATATGGACCT
GAGGGAGTATTAAAATTACTTCATATCGGGGGTCCCAATAATGAAATGTATCGGCACAAT
GTCAAACAGGAGAGGAGATTCAGACCACTTCCACCTGTATATAAATAGGCTTCACAACAT
GAGAAGCTACCTCCAGAATAACAAGGGGTATGGACTAACTATACACATGTTATGTGACGT
TCATGTACTACTCTACTATATCTATGTAAATCTTAATACTATTTTTGTACTATATATACT
ACTCCCTCCGTTCCAAAATATAAGACCTTTTAAGAATTTCACTATAAGACTACATACGGA
GCAAAATGAGNNNNNNNNNNNNNNNNNNNNNGTCTATGTACATCCGTATGTAGTTAATAG
TACAATCTCTAAAAGGTCTTNNNNNNAGGAACGGAGGGAGTATTATCTATGTGCAGTTTA
CAGGAACGGGCAATGGGCGAGGTCAGAACTCGAGGCCTGTGTTCAGTTGAACAGACAAAG
ATGGAGATCCCATGTTGTCAAGGGGTTTCTCCATGGTGAGCACTACCCCAGAACTCCCAA
CTTCACCGTTCAACTTGGACCGACCAATCTGCAACAGCACACCATAATTGCCGGGGCATA
AGTTCGTGCTTTTGCAGTAAACACGCTTCGGTAAGAAAGAAACGGTCGCGTAATGAGCAA
CTTGAGGGCTTACAGAAAGAGATGTGAAAGCCGAAGGATGTCTCGAGCAAGAGAAGCCGC
ACGACACACCGATTTCTTCCTTCAGTGAATGGATAATCTCCGCCCGCATGCCAGGATCAC
TCCCTCCCAAAGTGGGGCAAACACTGGTGCAAGTGGTTCCATGGATGAGATTATTCATAG
TTGCGAGCAGATTGTGTAAACAGAAAAATAAAACTTGCAATACAACTTATCAACTAAAGT
AGCTACTAGTAGGGAAGAAGCTGTAGTAAGCAGCCACCATTATTTTCTACTGTTGGCAGA
AACAGAAAACGACCTCAAGCAATATGGACTGCCATATGCCAACTAATGAACACAAAAATG
CAAGTATGATATACTTAGTGCAGCATGGAGCATGATCCGAATTGGCATATTTGGACACTG
TTTCATCAACGACGTTTGCTAATCTGGCATTAACTATGGGTAAACATCCCATACAATAGC
CGTTGCCATTTTCAAACCAACCCAGATAATCTATTCACCAGTCCTCTTGATATCATATCA
GTAAGGGCACCGACCTGACAAATACTACACGATGACTATTTTGAACTGTGACTAACAGCA
ATCCAGCCTTTTACCAAGTAAGACCAATCCACCTTTTTACCGAGCTGAGAAACCGGTTAC
GGTTATGAGCAAGTGTGTATAGTTCACTACCTGACTTGGGTGCTGGGTCTCATCATAAGG
CCAGACTTTTTCCATGCTACCGCGTGGGCGACTCCAAATGACAGAGAATTGTCAGGCCAT
TGATATGTAGGGGTAAACCATGTGCCTTGCGAGCTCTTCAATGGGGAAACATTTAACAAA
TAAAAGGACAAGTGAAAGAATTAGGAACTCACTGCAAGAAGATAGAGTAATGTAAACTTT
GAAACAAATAAAAAAAAATAGCATGTGTAAGGCATGTTATTGTTGTTTCATAATAGAAAA
GTTCTTGACAATCTGCACAGTTCAAACTGTTTCCCTAAGAATTTACAAACATAAAGAAAA
AAAACTGTGCAGTTACATAGCTAGCATTGACCAACCTTGAAGGAGAAGCCCAGTTTGGTT
TCTCCAGGAATTTTTCCATGAGCTTGAAGCAATCCACCAAATAATGGGAGAAAACCACTT
GCTGTTATCCCCTCACCAGCAACATATCTAAATTGCCCATTTGAGAATTCCACATCCATG
AAGGCCTGCAATAAAGAACAACCAAGGGAAGATGATACGATGGTAACAAGTACTCCCTCC
GTCCCAAAATAAGTGTTCCTGATTTAGTACAAGTTTGTACTAAACCAACGACACTTATTT
TGGGACGGGGAGACTATTATATATCATCAGTAGGATGATAGCCTTTGGTAAATTTGCCAG
CTATACAGGTGCCTATCAATGTACATCCACAAACAAACAGTCGTGCCAAGAATTGACGCA
CTCCTTTTAGGTTTACATGTTTCCAGTAAATTAAAAGGTTAGATGGTTGCACTAAGCATG
GACAAGCTCCATTGTTTTTTATTTCCTTATAAAACTCATACAAAGTTAATGGGAAGGTTG
ATAGTCAAAAAAATGTTAATGACAAGGCCTAGTGAAACAATAATAACCTTCATAGACACA
TGCACCACATGATGGCAAAATACAGGGGGCAAGCAAGCTAAATATTTGCACAGCTAACTA
AACTATCCGGCAACTTAGTACACAGACTGATGATCCGCAAACTTTGGTCAATAAAATTGG
AATACAGCTGACACTGGATAGCTACTAGGAAAAACACATAAATGTTAACTGAAAGCAGAG
GGCAAAAGGGCAAGGTAAGAGCAACCAACATGTCTACTTACACAAGCTACTGGGTTGAGG
CACATCATGGACATCAGCAACCATTTTTTCTGTTTTGACCAGATAACTGGACATAAGGAA
TGCACTCCATTCTACAAGAAACGAATAAGTTTTTAGTATGTCAATACATGCACACAAAGA
GCTTGAATGGACACAATTTCAGAAGATGGTTAAGTACTGAATGCATTAGAAAATTTAGCA
GAAATAAGTATGCAAAATACATGCTTACAATATGGAGAATATTTCTAATGGATAACAAAT
TAACAATGACTCTGCTAGAGTTGAATTCAGCATCTGAACACTTTTATGGATCTGCATACA
GAAATATGATCATGCATTTTAGAATCAAAGTTTCCACATCTTAAATCAGAATAGCTAGGA
GAGGGCATTACAATTGCAAGCTTCCACAGAACAGTCCTAAATCAGACTAGCTAACAGAAC
AGAATCACCAAGAATTGATGCAGAGCAAGATGGGCATTCCCTAATTATATACCATTCCTT
GATGATTACATGACCAATCAACTAGAAGAAAAAACTGGTTTCAGTTTCAAGTAGATGCTA
TGCATAATATTCGCACTCTTGTAGTATATTTCACATTTTACCAATATACAATGCAATGTA
TATAAAGCTTTAGAGATTACCATTCATAAGAAAAGGCAAAAAAAAACACTGTTCTAGAAA
GTTATCTGAAGGATAAAATAAATAAAAACTAATGAACATGCGCAGATTCATATATCAAGA
ATAAGAGAAGTACCTTGTGATCATAAGCATACCAAATGAGGTGTTGCTTTGACAGATTAA
TAGGCAAAAGAAGTGTTGTAGAGTCTCGCACAAAAAGTAAGGGACCCAACTGAATAAGGA
AACCAGGTGCATTGTCATTTCCATTAGTTGAACCACCTCGTGATGATTCTAACCTCCAAA
AATCTCCACGTGCAACAACTGAACTATCAACAGTGTGGTGCCTTGTATTGTACATTGCCG
AGACATTTACAGTCCCCT