morexGenes - Barley RNA-seq Database

Contig contig_409299

Source Contig contig_409299

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_409299 (3993 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_409299

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_56535	2	2440 bp	MLOC_56535.1	Available	Available	LOC_Os04g46892.1, FRAME:-2, EVALUE:0.0, 13104.m04737 protein WD domain, G-beta repeat domain containing protein, expressed

CDS Structure of MLOC_56535

Contig Sequence (3993 bp)

>contig_409299 3993 assembly3_WGSMorex_rbca.fasta
AACCGACCTTTAAATAAAAACTCTTATAAAGAAAGCAACCAACTATCTACAAAAAAAGTT
TTAAAATGTTCATAGTTTTACATATGTATGTTCAAACTATTTTTGTTTCAAAAAAGTCTG
TTTGTAATTTCTAAAATAAAATAAAATTCCCAAAAGTATTTTTTTAAGAAACATCTGTTC
AAAAAATGTTCTTTTACGAAGAAATGTTTCAATTTTCATAAAAACGTGACATGTTTAAAA
AGTGTTCCAGTTCTTATCAAAATGTAGATTTTTATTAAAAATAATAAAATATCCATGTTT
TCGCCGGGCATTTGTACTAGTAGGGAAAAAAGGCAAGAAAGGGACTCCACCAGTCCACCT
GCAGATCGTTCAATGATGAAAAAACAAAAGTTGGTCCAACATCCTTAGATACTTTCTTTA
ATGGTTCCTAGCAACGGACAAAACTCGAAATCAAAATCATGAACAAAAAGATGATCACCC
TACAAGCAGAGACTCGCAATGACAGAATTGTATACAACTACTCATGCACTCTACAAAATG
ACAGAATTTACAAGGCAGCGCTGATGCAACAATAGGATCATGCTGTTGCCCAGCAAGTCT
ACTCGTTCCCTCTTTATCTGACTATACGACCTGTTGGATACAGTATACGACCTAGCCTAA
CTCACAATGCCTATTGCTTTTTCGTTTTGTACAGATGGCATATTCCACGCCTTTGCTTCA
GTACCCTGCTCCTACCTATGCTATCGAATGGGCGCCACCAATCTATAAGCAAGTAATGAC
TTAACATCGATGGCTTTCTCATGACTGAAGAAGTCCGTCCCCTTCCCAGCCAAGGCGTAG
CATCTGATCCACTACCTTCAAGCTCAACTGCAACATTACCAACTCAGTTAGAATGAAGGT
TCAAAATTGCACAAGTCAAACTTCCATGCAACTAGCAACATTCTAATTAGGTTAAGTGCT
CGCATATAAGGAGGTGGTAAAATTGGATTGCTGATGCAAAATTTATAATGATATATGTAG
TATACTCACAGCAGGATCAGTGAACACCATTAGACCCTTATCAGCAGTAGAAACTAGAAG
ATTAGTGTTCTCTTTGTTTAATGCAATTGCTGTGATGTCCTGGCCCTTTCCCAGCTCCAG
TGTATGAAATACCTAACAGGAAAACATTTCTGGTAAGACTCCCACCAAACGATAAACAAG
GTACATCAGACTTTTGTTTTAAATTTGCTTTGTTTATTAACCTTAAGTTTATGCAGATCA
ACGAAGCAGATCGAAGGCACATGAACAGATTGCCCGATTTCAGTTTGCTCAGATATATCA
GCCTTGCGACTTTGTTTCCCAGGCTCAGTATTGTCCTCGCACTTGTAATGGCTGGATGAA
CAAGTTCCGATGAGGGCAAAATGGCCATCCATAGAAATCTCAATGCAACTAACTCCCCCA
GAAAAGGGTGATAGAACTGAGGTGGCAATAGGGACTCCATTGACTGTGAAGCTAGATAAT
CTTTTCTTCGATTCACTCCAAACCAAAATGATACCCTGGGAAGACAAGGATACAAAATGC
GCCTCCGCTACATGAATCTTCCTTATCAGCCGACCAGTCCGCAAAGAATGTAGCACCACA
CCAGACATGTTTGACGAGGATACAACAAGTCCCAAGTCTGGACTAACTGCACAGCTAATT
ACTTCTCCAAGGTGTCCTCTTAACACATGCATAGGACCTTCGATTCGACATTTCCTGGTT
TCTAAAAGGTTGCTCATGCTACTAGGACTAGTAGGAAGAGGGCTGCGTGGTGTCCTTGGT
GTTGCAGGTGGAGGTTCAGGAGGATTTTTCTTATGTATAAAGCCTGCCTGATGAATCCTC
CAGAGTATAACTGTAGTATCTCGAGACCCCGTCACAAGGTAGTTGCTATCAGGGGAAAGT
GCAAGGCAGGTCACTGGAGCAAGATGCCCAGAAGCACTTTCAATTGTCTTTGCTCCATCT
GGGGAGATCAACTTCACCGAACAGTCTGCATGCCCACCTATTGTTAGACAAAATGGTATT
AGAGATGGCATTAGCAGCAGCATCGAAAGACCAGAAAATAACAGAAGCGACTTAAGTATC
ATAGCAGAACTGATAATAAGAAACAAAATTCTGGAATGGCATTATTACAGGTGTGTACTT
TGGTTTAAAACCTACCAAAAAATCTTAAAAAATATTTAGATAGAGGAAGCAGTATGCTAC
ATTTACACTAGAGATTCAGCTTCAAACCCACTCTACAGAAGATAGAAAGTAAGTCAATTT
TAAGGCATGAAAACAAATAAAGTCAGTGTCAATCCTGAAGGCCTTCTCTTTTGTATCTTC
TGTGGGTGATTCTAAATTTGAGGTTTCTTCAAAAGGTAGTGTTAGTATGAAGATAATAAA
CCTAAAGTACAAACAGTGAGAAAAATAATCACCAGTGATGATGTCTTTGTCAAAGGTGAC
AGCAACTATAGCTGAACTACGGATTGCAGAAGCAGCAAATGCTATAGCTCTTGGGAACTC
ATAATCTTCTCCAGAACTAGTGGATCCTTTGAACATACGCATGAATGCACCACTTGTTGA
ACTTGCAGCATTTCTACCATGATGAAAAAGGAAAGGTGCCCCTTGGCCGTCTGGAGTATT
TGGTTGCCACTGGTGAAGTGCAATATGCGCCGCGGGCACATTCATATCTACAACTACAAT
AGAATCATTTGATACAAGCATGGTACTTGCTGGGACATTGCAGCGTTCTGGATTAGGCAG
TACATAAGATTTAAGTTCACTTGGATTCCGGAATATGGTCTGCATAGTAAATCATGAGGG
TCAGGTCATACAAAAACAAAAAAGGCAGTAAGAGCTATTAAGAGTGGTTGTCGATTTTAT
TAGGTATTTTACTGTCCTTAATTTATTTTGCAAGGATGTAGTGTTCGTCTATCAAGAGGC
ATGACAAATAAAATGGAGATACATTAGATTCAAAGAACCATACCCTAGACTTCTGTAATG
AAGAACTATAGCTAGATTATTATTTTTTTATATTAGTTCTTCGCATGGCAATGCCTTCCC
AATTCCAGCATGGGAAAAGGCAAAAATCAGTTAGCTACACAAACCCAACACAACTAATTG
TGGTTAAATAAAAAAACACTTGAAATCTATGCATCAGCTAATATAAAGTACCTGTAGTTG
TAAGACATCTGTCAATGACTTTCTCTTCATGTGAGGGACAGTCAGCAATTGAGATGGTGT
TTGTCCAAAATAGGCTATTTGATCTTGCATGGCTCGCCGTTGCACCTTCAGCATTTTCAG
TAAAATATCAGCAGCCAAATGAAACTGGTCCAAAACCAATGTACACTAAATCAAATGCAT
AATAATTACCGGATCTGCAATTTTGTCGATATCAACAGTTCCCTCATATGTGATGTAGAA
GAACACATTGTTGGCCATTACTGCATCTTTACCCCTCTGTTTATATCTGCAGAAGGAAGT
CTCTGTGACAAAACGGCGGTGCATAGACATTGTGTAGGAGATTCATAAAGCAAGTAACCA
GGTGTCCTACCTCATTCATGGATCTCAGACACAAAATATAAGCACAAAAACACAAAGGCT
GTTCCAAATACTGAGAATCCATATCCTTCATCTTGCTACATTACATAAATCTTTTTCCAA
ACGAAAAACAGGATGCTCCATCCAGAGAATTTTGTATTTTTTTAAGCATCAGAAGTGCTT
GATTTCGATATAAAAAGGGGCATGGATTTATTAGGTTAGGTTATATTGATGGGAAAAGAG
ATAACATACTAATGGTGACAAAAAGGTAATGCTTGAAAGAAAGGTCAAACCATCAAAGGG
ACGATCATTGCTGCCGAAGCGCGCCGACGCCCACAGGCTGAATGACTATCGGCCGATCTG
CTTGATACATATCGTGGCGAAACTCTTCGCGAAGGTGCTATCCTTGCGCTTAGCCCCGAA
GCTGGACTCCCTGGTGAGCCGATATCAGAATGC