morexGenes - Barley RNA-seq Database

Contig contig_408810

Source Contig contig_408810

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_408810 (342 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_408810

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_56484	1	159 bp	AK372284	Not available	Available	None
MLOC_56485	1	321 bp	MLOC_56485.1	Available	Available	LOC_Os01g64970.1, FRAME:+3, EVALUE:4e-11, 13101.m07011 protein CAMK_CAMK_like.11 - CAMK includes calcium/calmodulin depedent protein kinases, expressed

CDS Structure of MLOC_56484

CDS Structure of MLOC_56485

Contig Sequence (342 bp)

>contig_408810 342 assembly3_WGSMorex_rbca.fasta
GTGACACATCAAGTTGAATTTCTTCCCGCCGCGATTTTGGGTACTCCAAGGTTGGTTGTC
GAATCTCATTATAGTTTCTTTTTCCTGAACAATTTTTGTTAACAACAAATCTGATAGGAG
TGTGGGCACATGCACTGTAAATCCTGTCATGTTTCTGCAAGTCTGCATAAGAATAATTAT
TTGATGTTTACTGCTAATCATTGTACCCTTTGCCATTTTGTGACAGTCATCGGTACTACA
TTCAAGGCCCAAGTCTGCAGTGGGTACACCAGCATACAATGCACCAGACGTTCTTTGTCG
CCGGGAATATGATGGGAAGGTGACCTAAAAGAAACCCTTCTT