Map Locations of contig_40876 (11040 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_40876

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_56477 3 1854 bp AK372443 Available Available None





CDS Structure of MLOC_56477






Contig Sequence (11040 bp)

>contig_40876 11040 assembly3_WGSMorex_rbca.fasta
TTTAGCCCCGCCCCTTTAGTCCGGGTTGGTGACCCGGGACTAAAGCCCCTTACGGACCGG
GGCTAAAGGCCCAGTCCCCACTAGTGTCGTGTCCTATCTAGGTATCTTGGAGTTGGTATA
GATACGTTTCCCGTCAAAGCTGTTCCTCGAGGTTGCGGGCGCTGATTTTGTAAGGATTTC
GTCCTTTGTTGGCTGCGGTTCTCGATCATCTCGGTTGTTTGTTTCATCGCCCAACGATAT
TTTATAGGGTTTCACGTACACACTTCATCTTGGCCCTATCGCATAGTGCGCTAATACTGT
CCAGATTATCTTTATGTACCAGTATATCTATCATCTATCAATACACTGATGCACAATATA
TGATTAATGTTTTTATTTTAGTTCGTTGCTTTCTTTCAGGGTACAACATGGGAAAAGAGA
AGAGACACATCAACGTCTTTTTTGTTGGTCATATGAACTTTGCCACGAATAACTCTCTCA
TAAGAGAGCTGGGTGCTATCAGCAGGAGTGTCATAGCGGAACTTGAGAAAAATCTCCATG
GCCCACTTAAGTATCTCCTTGAGGTTGCCAAGAAGGAGCTTAGAGATTAATCTCTCGTGT
GGAAATTCGAGACCAGCAACTATATTTTTGGTGTGATCGATAACGCAGAGAAAGCTGACT
GCATTGTTGTGATGATGACTGAATCCACAACTAGTGGTTTTGAGGCTAATATAGAAGAAC
ATGGCTTTCTGAATGGTGGTAAGCAGATCATCTGCTGCTGCAAGGTATGTATACATCTGC
CTACCATATATAGAGTTTTAAGTACTGCAGCTGTTTAGTCTTTATCAGTTTATATGACAC
AATAATCTAGTGTTGTTATCCGTGTAGCTGGATGAGCAGATTTACCATGCAATCGAGGGA
CAACTCTCTTCGCATTTTGTGAAATCTGGGTGCAATGCCATGATTGTGCCGATAAGTTGT
GATGAAGAAGGAAACAATATCTCTAAGAGAGGCTCTCATCTGGACTGGTACAATGGCCCT
ACTCTTTTGGAGGCTTTCAATCAATTAAGTGAACCAATCAGCACTCAAGGTGTGAATGCC
CCTCTAGTTTGCATTGCTTATATTATTGCGCGTGTCCTTTTTATGTTATGTTTTCACATA
TCAACTATTAATAATTTTCTATGTAGGTTATTATTACAGAAACAAGTTAGAGACGTATTG
TTTAAGAATGTACCAGATGTTTCCTGTCTATCTCACAAAAGTTGAAGGAGAACTGCATAA
TGTGAAATTTAGGTCTGAGGTCAAAGTGAATGATGATACTTTCTCTTCATTGGAGGCCCA
TCTACACCGCAAAGAGGCAGAATTAGATGCTGCTCAAGTTGCTTGCACAAGCCTGTTGAG
TAAATGTGACGATGTTACCTTGAGGATCGAGAAGGTATGGGGATTTCGTTTTGTACTTGC
ATGTCTTACAATGCTCGATAGCTGCAATGGTTTGCATGATTACATCTGATTAATCTTACA
ATGCTCGATACCGACGAGCTGCTCCGGCAAGCGCCGATGAGCTGCTCCGGCAAGCGGCAA
TGGCGAGTGACGACGGCGAGCCAACGGGCGGAACTGCAAGCAGGAGGCCAGGGGAGGAAG
GGGCGACGAGGCGCTACATGATATTTGCGGTAGGAGGAAGAAGGAACGCCTCGGGAGGCT
CGATCGAACGGCTAAGACAAGAAAGATTGGAAGGCTGGGGGCCGACCGACCGAAATTTTG
GACCGACGCGCACGCCGAGTACTCACTAATTATATAGTGTTGAATCTACGTGAAGATTGT
GTGGATATTCTTTTTCTTTTTTTCTTTTTTTATGTTGATTGAGTCACTTAGATGTACGAT
ACTTAGGACACATCTAAACAAAACCTATTATAATTATATAAACTGTTCGACTAATACATC
ATGATTCATGAGTGGTTCTTGCATTTTCAAAACTAATGGTGCACATAATTTTGAAGTGCG
TAACTATCTAATTTTCATTGGGCGAAGAATCCACGGTCGAAGTCAACTTGGAGAAAAACA
TTCCTTTGATTTACCAACATGTGAAATAATCTACAGTAATACAGTATGTTCCCAAAGAAA
AACCTACAAACCCCTTAGAACAAGAAAATAAACGAAGCGACTTGCGATTCACTCCATCGA
CAAGCATTTTCTACCCTTTCAAAAAAAAAACATTTTCTACCGGCAACGTCTTTCAGTACA
AAGATACACGCGAAAACTGATATAATTCAGAGTTACCCCTGCACCTTACCTACTCTTACT
TCAAGGGGGTCTTCTCTCCTTCCTCCAGGCCGGCCATGGTGTCATACAAGGGTTTGTTCA
TCGTCTCCGGGAGGTAGAACACCAACAGCCCGCCGATGATCCCCGACACGCCAAACACTG
CAAACGGCACCCGTTCCCCGAGCACGACCACCATTGGCGCCAGTATGGCACCCATCTGCG
ATGCCTGCGACGTGCACCCTAGTGCCGCATTCCGCACCACCGTGGGGAACAGCTCCGCCG
TGTATATGAACAACAAGTTGTACGTCGCCGCCATCCCAAAGATGCCCACCACACCGCATA
CCATCCTCACCACCCTACAATGTCACATGCTCAAATGTAGGAGTATTAGTAGGAAATAAC
ATGACGCACACACGTAAGTTTGACCGCTGAATTGAGCTCTCGATTAATTTACCTCATGGC
GCCGACGCCGGCGATGAGGCTGCCGGCGATGCAGAAGACGCCGCTGAGAAGCATGGTGCC
GATGCCGAGTGGCTTGCGGCCAAAGTGGTCGAGGAGCAGTGCGGTGAGCAGGTAGGCCGG
CATCTCGGCGATCGAGTTCACGGCGACGCTGACGTAAAGGTTGGTCTTGAGGTTGACGAC
GTTGAGGCTGAGCCCGTAGTACACCACCGAGCAGAGAAGGTTGATGAGCACGGACAGCAC
TAGCCTGGCCCGCGTCGTCCTCGATCGGAACACGTCCAATATCGATCCCGACGACGACGG
CGACGGCGGCGACTCCTCGATCTGCTTGCCGCCGGTGACATCATCTCCCTCATCATCAAG
CTTTAGCGTGACGCCGTCCGGGATGCGCCGGCCGTTGGTAGCCGCAATGTCGCGCAAGAC
GCGCATGGCATCGTCAGTGCGCCGTCGCACGAGGTACCAGCGCGGCGACTCGGACACGAA
CGGCATGACGGCGAGCACGAAGACGAGGGAGGGGAGGGAGGTGACGACGTAGAGGAGGCG
CCAGGAGGACTGGAACATCGCGGCGACGCCGGCGAGGGCCGCGATGCCGCCGGAGAAGAA
GTAGAAGCTGGACATGCCGGCGGTGCCACGGCGGGAGGGCCCGATGGGCTCCGTGGCGAG
GACGAAGGCGCACAGGCCGATGCTGCCGGTGCTGAAGCCCGTGAGGAGGCGGAGGACGAC
GTAGACCCTGTAGCTGGGGGAGAGCGCGGTGAGCAGGCCGAAGAGTGCGTTGAGGAAGCA
GACCACCTGGAGGGAGCCCTTCCGCCCCAGGAACGAGTCTGACAGGTGCCCGAACACGCC
GGCGCCTGCAATTGCAGAGAACAACAGCACGATCGATCACATGGTGATTACAGTACAAAA
AAAACATGAACCAACAGAAAAATCACCATAAATATAGGACCCCAGACCGTATCCGGGGTC
GCCGGCGATGCGACGACTATGACCTGATCTGATCCGACCGGCAGCCTAGAAGAATTGGCA
CGTAGGCATGCTAATAATTCTACGGCACATGTGCGAGCGCACGTCACCTCGCACCGTACG
CCGTCTTCCGGGACCAATCGCTTCGCAGGAGCTCCGGGGTATCATCCATATGGAGTGTTT
ATTGAGATCCTGATGAAGAAGCATATGCCGGATCCCGGTAACTGTCAACGTCCTATAATT
TTCATTCTTCCCTTCTAATAAACCGGCCGGTCGGCCGGATACTACACAAACACAGCCGCA
TAATCCCGCGTCAACACCAATATATTTACTAGTACAATCGCACACCTTGTAGCCGTCTTA
AACGTTCGTACAAACGAAACTCGATCCAATCGAACGCATCCAACTGACCTCGAATGTCCG
GTCTGACCGGCACGACGCCTTCATATCCAGTCTAAATATTAGGCGGATATGGTCGTTCGA
ACACACTTGCCACGTCAGCCTGTCCTGCCACCCCCTCATATATTCGTCCTCATCTATTCA
TCGGATTAAATGCTAGCCACTTAACTTCACTCCCCTTCACTCTCATCCGTCGTCCAAGTT
CGCCTTTTTCCGGCATGGGGTGCAACGGATCTAACTCCGACCAGTATGGATCCGTCGACT
GGGGTGTCATCCCTTATGAATTGGTGGAGGCAATGACGGTTTGCATTGCACTCCGTCACT
CCCACGAGGACAGCGCTCGGCCGACGGTAAGATCTTTCCGGCGTGACACCATAGCGTCGG
CTCAATGGGCGCTCAGGTCCTTTAGGACTGGAACATGACGGTCCCGGCGATCGAAAATCT
CTCCTACCCCATCACCGGTCCGGCAGATTCCAAGTTCGACCAAGAACGGGTTGTTTGACA
TGGGAAGGAGAGGATAAAGGTCTTCGAGGCCCATATCGCGGGGGAAATGGCGGCGGCGGA
TGCAGCGGCCGCGGAGGAGGAAGCCATCCGCACCCACATTTTGAAGAAAAAGTGACGGAG
GAACACGCGCGCCCTCGCTCGAGAGCATAATTGAACGGTCCGTTAAATGGTCGGACTGCC
ATCAAAGAAGGAGAAGGAGGTCAGCGGCGACGACAATAGCTTCGGAGACGAGCGGATCCC
GCTCCATCCCTATTGTATCTTCGGCTGGTACTTCCACGAGAAGGACAACAAGGGCTCCGG
AAAGGACAAAGGCAGCCATGGATGATCTTCATCATAGCCAAACATACCAAATGATAGTCC
GATGGCATGTTAATAGTGATGAAATAGCAGGACGATGTGTGTAATGCATCAACGTAGTAG
TTGAATGAGTTTGTATGGATTTAAGATATGGCATTTGAGTTGTTCGGTTGTGACTTGTGA
GAAGGCAAATGTAAAACTTGACTGGTCAGTTTGAGGAGCCGGATTTGTCCGCAAATATTT
GAGGAGCCGGATTTGTAAAATTCGGCTATAAAAACATCTACAACCGAATACAACAAATCC
AGACTCTCAAACAGTCCGCATACCCAACAATGTCTCGTAGTACAGGAGGTTTAGGGAGTG
CGGTTGTAAGATGCTCTAAGAGACATTTAGCAGATTAAGCAACCTTAACGACATGTCAGT
GACTAGAACAAGAGATTATCAATTCGAATACTCAGTTAGTCCTCGTACATTCATTATTAT
TTTTTTGCTGGAGAACATATATCTACTAACAGAGGCTGGGTGAGTGGGGGAGCACCACTT
TCCGTGTTGTTGTGTTGCTGCAGAAACTGTAATAATTGAGGGGACGAGGGATACATCCTT
GAATGTAAAGATGTACTGTAGTACTAGTCACTGTTGGTTTTTATACGTACCATCCAAAGG
ATCTACTATAGAGCACAGGCGCGCAGTTCAGCCACATGCACTGGATCAGTCCCGGGAGCC
GGTATACTTGGATGGATCCGGCAAGAGATCCCAAGCATATCTGATTCCCAAAACACATAA
GACAAAAGGGCTTGGAAAGAATACTCCCTGGTAGAAGAATGCGACACGGATGAGTGAGAC
TAATCTAAAAGGAGTTTGTCGTACTAACTCTGTTCCTAAGAGTACGTATTGCATTGGCAG
TTTAAATTAAACTGTCAAAAAGGGGTTATATTTAAAAACGGAGGCTAAGATCACATCCAT
TAGGCGATGTGAGATAAATAAATTAGCGCAATTTGCTACGTAGGTGATTCGTGTTTTGCT
TCATGGTGGCTGATCGGCAGTGCTGTCAGACCGGCGACATGCATGCATGAGATCGCGCAC
GTACCATTCAGAAGTAAAAAAACGCACTAGAATACGAAATAAGGCTTAGCCATAACAGAA
GTCTAGATGCAGTTTAGCACAAAAAGATGGAGCAGGAGTCAAAACAAGGCTGAAGTAAAC
TACAACTATCCTTCCTACTCAGCCAGTGACACTGCATGCGTCCAGATGCGCAGCCAGACC
TCAGTTTTCCCAAGAAAAAGATTGCACGGCTATTCGGCAGGCAGGCAGGCATGTATACGG
CGCTTGGGATGTGGCGGCCGGCGATAAAGACGGATCTGAAGAGGAATTCGATTTGGCTGG
TTGGTGTGGTGGCGGTGCCACGGCAAAGTTGCTCCCCTCAAGACGCGATCTGGGCATGCC
ATCCGCGTGACAGACAGAGCACGAGGCTCTCTACTTGTGTGATGCGTATGCTGGAACCCA
TCCACCGTACGTGTTGTTTGTGTGTAAGAGGAAATATCAGCTCTACTTGAGAGAGCGCGC
GCGATGCCAACCGACAGGATTACTTAGGAACACGAAGGAGATGATGCAGATTTGTTAGGC
TGACGGCGAAGCAAACCATATGGTAGGCAGATGTTAGGCCGACCGAAATAGGCAGAATTA
CGATACCAAACCGATGGTAGAACAGAGGCTGCAGAGAGGCCAAGAAAACAGCAGTACAGC
AACGCCACAGAAACAGATAAGCCGGCGATCGGCGGGAGCAGACAGAGGGAGCGGCGGCGT
ACGTACCGATCATGCAACCGGCGAAGAAGATGGCCTGGACGAGCCCGACCTTGTACCGCT
CGCCGCAGACCAGGCCCCACTCGGCCACCGTCGACGACGCGCTCCCCTGCGCCCACTCCC
ACCCGGCCGCCGCGCCGGCGCACCGGTCGCCGCACCGCCCGTCCCCCGCGGGGCACCGCA
TGGCCGGCTCCCGGTCCGCGAAGATGATGACCATGGTGTGCAGCGCCTCCAGCGCCCACG
CCGCCGACACCAGCACGAAGTGCCGCAGCTGCCACCGCCCCAACTCCCCCGCGTGCTCCG
CCAGCGCGTTGTCGATGCTCAGGCGCCGGCTCGCCGCTCCCCCTCCGCCGCCGCCGCCGG
AAGCGGCCAGCAGCGCCTCCGTGGACATGGCCGGCCGGCTGTCGCACGCACGTACGTCGC
GGACCCGCGTCGTTCCCTTGGCGCGGGGTGTGTGCGCGCACGCGTGTACTGGGGCAAGTG
CCATTAACCGGGCGCTATTTGTAGGCGGAAGGAGCCCGTCGAGGCGTCGAGGCATGTGCG
CATGCTTGCGCAGGTACTCTCACGAGTCACGGCTGAGGAAGACATTTACGGCGAATATGA
CGATTCCCGGTCGTTCAGAACAAATAAGGAAGCCATTTACGGCATCATTTTCACCACCTT
GCTGGTAACAGTTTGAAAGACTAATGTGCGTTTTATGTCGATGATGTGTGCCCATATTAC
TCTACATTCTTCAAACGACACGTGACGATCAAATGGCAAATATAAACAGCATGAGGAGCT
CTTTTGGACAAGATATTATAGACAACTGAGGTGGGCATCAAAATTCAAGAGGCGAGATGG
AATTTTTTAACTACATTTCAAATAAATACTTCCTCCCTCCCTAAATATAAATCTTTTTAG
AGGTTTCATTAAGGGATTACATACGGATGTATATAGACAAATTTTAGAGCGTATATTCAC
TCATTTTTCTTCGTATGTAGTCTTTCAGTGAAATTTCTAAGAAGACTTATATTTAGAAAC
GAAGGGAGTATGTTATAGTACTTTAATATGTATATCGCGCAGCAGAAGTACCCTAAAAAG
TGCAAGAGATTCCAAGTTCGCGTCAAAAAAAATGTTGAAAATTCAAAAGAAAATGTTGAA
GGTTGAATGAAGGTCATCATTTGTGCCCTTGTCACTACTCATCACCTGCTGGGAATAACT
CTGAGAAACGAATCATAGGGTACAATTTAAACTAAACATGATCATATATACCCCGGGCCG
GGTTAGGTTCCAGGCCGGGCATTGACAAAAGGCCGAAGTAAAAAAAAAAATCGCAAGCTT
GAGCATGGCCCGACTCAACCCAAAACATATGGACAGTGCATTTTTCATTTGAAATGCTTA
CTTTGGGCATTTCAATACACTATTGTACCTTTTTTTGGTTCTAAATGTCTGGCATGTAAC
AAAATCCGTCATACTTGTATGAAATTTGTCGTGTTTGCATGAAACACGGTCGTGTTTATA
CGATTTCGTTTGATTGATCTGAGTTGTTGTCAAAATATATGCGGATGACATTAGATGCTG
TCTTCCTGCATTGATGTTTACGGATTAGTCCTTTCCTATTCATAGACGAATGCGGGAGAA
AATTTACGTGTTACTGTCCTAACCGGTCTCGCAAGCAAATCGTCCAGCTTGGCGGCCGCT
AGCTGACACTCATGCAGTGTCGTGGTGGAGGCAAATCCGGCAGGGCCGTGGGCAGACCGC
CCATGAGAAGCGAGCTAGGTTGATACTCTCATTTTGGCTCCGCCAGTGAAATTAACACAT
GACATGCGCCGACGACGTGCCTTGTTTCATTTCCCTCGTCCACGAGAGTACCATGTGGCC
ATGGAGTAGACAACATCCATGTGTAGCGTTTCTCGCATGGTTTGGCATGCACCGTCGGCT
GGTCGCGCGTCAGGGCGGATTCACAACCGTACACGTACGACCGCGGCGCCGGGTCGATCG
GACTGGACGCTGCGCCGCTTGCTCTCAACTTGGAGAGGTGCCCGTCCATGCACGGCATTG
GCTGGCGCACGGCGCCATGGAAGGGATTCCCGATTTGTATCCGCGTGCGTGCGTCGTGTT
CTACGTGTCTCGATTGGGTGAGGATAGGGCCATACGGGAGGCTGCGATTGGGCTCCAAGG
GCGGCTCGGCCGGCGTCTTGTGCACTGGTGTCTGCTCTGGGGCGCATCCGGATTCGCACG
TCGCCGCCGAGGAAGGAAGAGGCAGATTGGCTGCACGCCGCGTGGCTCTACAGCAGTACC
CCAATGTGATTGTGGTTGTGGTTGTGGTTGTGGTGTGGGGGTGACTACCGCCGTTCCACC
GATCGATCGGTGGGCAAAGGAGCCGGGTGCCGCTCGGCGGGCATGGGCGGTCGCGCTAGC
ACGTACGCGAGCGAATTGCGGGCCGCATGGCAGAGCGCCAACCATGCATGCATGCATGCA
TGCCTATCGGCGCAGCTAGCGAGCTGGTCATTTGGTGGATGCACCACGGCTGTTAAGGGC
ATGCATCTCCAGCGCTGATCGGTACATGAACGCCATCAAATGTTCACAGGCATATTCCAA
CATGTTTTATCCCCTTTATTAAAAGTTGAAAGTTGGATACCCAACAAGTTTTTACATCAA
TCGAACCCAAAAGCTCCCGGTCCTGCTACCCCTGCCAAATACCTCATTTTTCATCCTACA
ATAAAAAACAAAGTTTGGCCATTGTCATTTATGTATTTGTTTTTTGTCTACGTCACCTAC
GAAAATACTCCCTTTGTCCTAAAATAACTGTATCAACTTTGTACTATTTCTAATACAAAC
TTGTATTAAACTTAAGACACTTATTTTAAAACGGAGGGAGCATATTGTTATGAAAAATTT
ATTGAACACGTTATATGTGTATTTGTGTGTGTACAATTTATTTCTTTTGACTTCTTTTGC
ATTGTGGAAATATGTCCAAAGCGTTTAAATATGCTAGACAGTAGTCTTCAAATACTTCGT
CCTCTTTTGGGGCATCTTGAGGGTGGACCCGTAAACTGGCCGCATCTGTTCGAACCGTAT
TATTCAGACCACAAAAGCCATCCAACGTCGTTTTGTAACAGTCAACGGAGCGTTTGGATG
CGTTTTCTCTTGTAAATTGGAGACAAATATAGGGACCTTTGCACGAGTCTGGACACCCAA
AACATAGGACTCCGACACCCCCAGCCCACCAAATCCCCCCTTTTGGTCCCATTTATTATC
ACTCCACCTTCTTCTCCCCCTTACTTTGCATCTGCACCCTTCACCTCCATCGGCACTGTT
GTACCTCTCCGGCCGTCACAGAGGCATTGCCGAATGTCCGCAACCATCACTAACACGCCT
GCTCGCCTTTACGACGAATTTGTCCACGTTGAAGTTGTTTGTACCCAGGTACGCTATGTC
CCCTGTTGACGACCTCCATGGCGGACATCACGCCCGTCAGGTCTTCGGTCAAATGCCATT
GAACTTACTTTCAAACGCTATGCCGTTTTTAGGGTACGAATGATGGTGAGCTATTCGATC
ATGGACGATGAGTTGGTGTGCGATGCGTGGTTGGCGTATCCACGTATTTCATATGCAGGA
GAAAAGGGGAGGCCTTCTGGCAGCAAGTGCATGAAACGTTTTATGCATGAAAGCACATTG
CGTCATACGACATGTACATCATTCAACCACATAGCGTGAGGTCGTTGTCCTATCGCTAGC
ACACTTTCCAGATCAGCGTCACCAAGTTTCGCGACGTGGTTCATCAGCTCGAGGCAAGGT
GGACACTGCACGCGGTAGAGAACGAGATCGTAAGTTTTGCTTCCTTTTGCTCAACTTCTT
CATTGAGTTATTCGCTTAATGTTGGTCTACACACTATATGTAGCCCGCACGCGTTGACAT
GATTTACCACAGACAGAGGATGGTCATTTACATGCATACACTATTGGATGGAGCTGAAGT
GAGAGTATGTGTGGAACTACATGATGTGTTGATGAAAAATTTGTTGGACACCTAGGATCT
AGTTAAATTTGAGACATTGTTCTACTAGACTTAATTTGCACCCTATGCATGGATGATTGA
TGCTATTTTCTATCCGAACTTCGATGAATATCAGATGGTTTGCATGAATTTCATTTGATT
TGTTTAAATACAGTTTAAAATGTATGCGGTTATGGTTGATTGATGGCCTTCCGCATTCAT
GTCTGTGGACTGATTATCTCTGTCCGTGGACAGATGTGGGAGGTAATTTACGGGTTATCA
TTGAAGATACCCTTAAACTTGTACTCCCTCCGTTCCTAANNNTAAGTCTTTTTAAAGGTT
TCATTAGGGGACTACATACGAATGTATATAGACATACTTTAGATTATAGATTCACTCATT