morexGenes - Barley RNA-seq Database

Contig contig_40864
Source Contig contig_40864
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_40864 (10758 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_40864

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_56471	4	6275 bp	MLOC_56471.1	Available	Available	LOC_Os08g38610.1, FRAME:-3, EVALUE:0.0, 13108.m04097 protein pentatricopeptide, putative
MLOC_56470	1	1646 bp	MLOC_56470.1	Available	Available	LOC_Os11g38959.1, FRAME:+2, EVALUE:1e-110, 13111.m03833 protein 40S ribosomal protein S9-2, putative, expressed
CDS Structure of MLOC_56471

CDS Structure of MLOC_56470

Contig Sequence (10758 bp)

>contig_40864 10758 assembly3_WGSMorex_rbca.fasta
TTCCCCTCAAGCGATCACGGAGAGGAGAAGAGTAGAACCACAGGCATACGAACCCCTCGA
AGAGCAGCTCTGAGCTCTGCGGCTTGCGCTCCCGAATCCGCAGCCCTTCCCCGCTTCGAT
CGGAGGTAATCGTCGTGATTTATTTCGTTTCGGTGCTGGGTCGGGCCGCGGAGGAACTGA
CGGAGCACGTGCCCTGGTTTTACTTTTACAGACGCAGGGGAGGTGCCGGATCGAGCTTCG
CGGTCGGCATGGTGCCCAGGGACATGGTGAATGCCCCCGCCGAGAGGCTACACGTCCAAG
GGTGAGTTCCGGGGCCTGTGATTTGTTTTTCCGGTCTCGGGGAGAGGGGCGAGAAAATGA
ACTGGCCTGGAAAGGGACTTCTAGAGCGATTTTTACCATGTAGAATTGGTTCGAGCAAAT
CCTTTTCAGTGAAATCATGGGAGTGATATGGAAATACTGAAGGAAACCATATGACTTCGT
ACTCAGCCTTGAAGTAGAGGAACCAAGCCCTAAACAATCATTGCTTCTGAAATTATAAGC
TGCTTGCAAGTTGTAGCGTCCATTCCACTGGCTATCCTGTGGTTGTGGAATATGTAGTTT
GGTGTGGGCTTCTCGTGTTGTGATTTCGTGCGCTACAAATTTAATGCGTTCAATAGACAA
TAGTGTTCACCATGGTGTCTTATGATCCCGGAAACTCCTACCATTTCACGGCGAACCACC
GCAAAGATAAAATTGCTCCGCACAATTCTGATGTCACCTCACTGGATTCTTCCGCTGATG
TTTGAACATTGTGCAGGTCTGTAGTGAACAAGAAGTGTGAGAAGAAGGTGCCAAAGAAAA
TCCACAAGTCAGAGAGGGAGAAGCGTAAGCGAGGCACGCAGAATGACCTCTTTAATGAGC
TGGGAGCCATGCTAGGTATGTGCATATCTTACTAGTAGTACAAAGCAGCAAGCTGCAACA
ACATGATTTCTGCTGCCATTACCTCATTTGGAAGTTTCTTTATATGAGCTTGCGGAGTGG
TTATCTCTTATCTAAAATTTAACATCTAGCAGATAGCTTTTATTAGGATAATAAAGCGAG
ATCACAGATTTAACATCTACTCCCTCCGTTCCTAANNNNNNNTCTTTTAAGAGATTTCAC
TAAATGTCTACATACGAAGCAAAATGAAGGAATCTATACTTTTAAATATGTCTATATACA
TCCGTATGTAGTCTAGTGAAACCTCTAGAAAGACTTNTATTTAGGAATGGAGGGAGTAGC
AAATAGCTTTTATTCACACAATAACCTAAGTTTTGACCTTTGACTATGTAAGGCAAATTT
ACATTGAGTGCATATATGTCATGATTTTCTTCCCATGTGTCTAACTAGTTTGTATCAAAT
CTACAACCGCATCCTTTCGGATATGCATTTATACTTTCTAAAATAATGCAACACATCTTC
TTTTCAGAACTAGACAGGCAGAACAACGGGAAGGCATGTGTATTGGGTGACACTACACGG
ATACTGAAGGATTTAGTTTCACAAGTGGAATCTCTTCGGAAGGAGAATACCACACTGAAG
AATGAATCTCACTATGTAAGATCTTTTGAATAGAGCAACTCCATTCAGCAATTTGATGAT
CTGTGTCTATTATATCATGGATATGAAAATGTTACTAGACCATATACTTGTGCCGAGATG
CCTTCAGAATAGGAAACCAATCCGATCAATTAACATTTATGGCTCCATGCCAAGTAGTAT
TATTCATGAACAAATAGGAACTAATTTACACTATTATCACTACTCAGATAATACACATCA
CTGATGCATTCCCTACTTTCCTCATGATATGTCAGGTTGTGTTGGAGAGAAATGAACTCC
GTGATGATAACAGTATGCTTCGCAATGAAATCCTGGAGCTTCAGAACAAGCTTAGGATGG
GTCTGCAAAGCAACCCTATTTGGAGCCAGGATACTACAAGATCAGCCGTCGCAGTACCTT
ATCCCACAAGAGGAGTGTTCCCAGTACAGCATTCACCACATCCACCAGTCATCACCTCGA
CGGCACTTTCTCTGCAACCTGTAATCACTGAGCAATGCTATGTTGCCCCACCACGAGAGC
TACAGCTCTTCCCGGAAGTTTCATCTGCATCCACTGAAGACAGTGAACTGTCACAAGACC
AGGGGATTTCCAATAGTGTAACACGGCCTCAGGCACGGTACCCTACACCAGTGGTGATGT
CGCCAGTGAACGAATTCTCAATCCTTCCAAGGATGGGAGAGGAGCAACAATATAGTAGTG
GCACTAGTGAGGAGGTTTAAGTACATAACACAATTTGCTTCATCGTTTGAGAAGTTTCTT
TAGTGTGAGTAACAGATACATATGAAGGTGTGCATGTAAACTCCAATCTGTCTCCGAATC
TTGATCTTAACTGGTTAAATAGATGATAATAAAAATTGCATTACACCTGAATCTTGTATC
TGATAGCTGCACATGTATGTATTGCTCTCAGCAAAAATCAGTCGAAATGATGATACCGCT
GTTAGTCACCTCTGCAGAAGTATAATTCCGCTTCGACAGTCCAACCTTGCGATCAGTTGG
TGGCCGTTGCTTCAATTCAGCAAGGTTAGATATCTTACGAGGACACTTCGATGGAGCTGC
AGCCCGCTTCTTTCCTGGCCATGACCATTTTCTGCCCTTCTGAATCCCTGACCTGTGCTA
TTTCATCCCAACGGCCTTCCAGTGCGTATGCGTTCGACAGTAGAATGGTATCTGACGGAT
GGTGATTGCCCATGGCGTCCAACCGTGTCTGTACCGTCCTCCCCAACTCGACATTGCCAT
GAACCCTGCAGGCTGCAAGCAAAGTTCTCCATCCCACAACATCGCCATGGGAGGACAAAC
TTCTTATAAGCTCATAAGCTTCATCCAATCGCCCCGCCTTTCCCAGGAGATCGATTATGC
AACCATAGTGTTCGGTGTGAGGAGATAGGCCATATTGCCGCACCATGCTCTCGAGGTGCT
TCTTCCCTTCAAACACTAACCCGCCATGGCTACAAGCATTCAGCACCGCAAGAAAGGTAA
CCTCGTTAGGAGTGACACCGTTTTGTTGCATCGAGTGAAACAGGGATATCGCGGCATCTG
ACTGCCCATTAACTCCCAATCCCATGATCATCGCAGTCCATGCCATCACATCCCTGTCGT
GCATTGCATAAAAAACCGCAATTGCCTCCTTGGGGTAGCCACATTTGAAGTACATATCCA
CAAGCGATGTTCCTAATGCAGTGTCAAGCTCAAGGCCAAGCTCCAGCGCAAGCTCATGGA
TGCGACGACCGGGTACGATTGCCCCTGACACTCCACACGCAGAGAGCATGCCCACAAGAG
TCCCTGTGTTTGGTTTCAGTCCCTCCTGTCTCATGCTATCCACCAAGCCCATTGCCTCCT
CGATTTGCCCGGCCTTTGCGCAGCTATCCACCATGCAATTATATAGCACCAAGTCCTTCT
TCGTCGCCTCTTCGAAGACCTTCTTTGCACATCCAATCTCCCCTTTCCTAGAATACATCC
CCTCCACTGCTGCCGCCACCTTGACATCCTTGCAGAACCCTGTCTTGACGCTGAACCCAT
GAACTGACTCCCCTTGCCACACACACGCAACCAACACGACCACCGCCGTCGCACTGACAT
CCACACCACAGCACCTCATAGCACTGAACATCTCCACGGCCGCACTGATCTCCCCGGCCC
TGGCATAGCTCCCGATCATCGTGTTCCATGACACGGTGTCCCTCTCAGGCATTTCATCGA
ACATCCTCCGCGCGTCCCCTATGTTCCCTATGCAGCAGTAGAAGTGGCACAGCACGTTCC
CCAGGCCCACAACGCCTGAGAACCCGTACCGCAGCAGGAGCGCATGAACCTGCCGCCCGA
GCGAGGCCGCCGCGTCGTCGCCGGAGTTCTTGGCGCAGAGCGCGATGAGCGGCTGGAAGG
CGAACTCGTCCAGCGCGGGGAGGCGCGCGCGGGCGGAGGCGAGGACGGCGAGGGACGCGG
AGGCGGCCGAGGAGAAGCAGGGCGCCGCGGAGAGGGCGCGGAGGAGGGCCGTGTGGTGGA
AGAGCGTGGGGCACGGAATGGCGGCGAAGAGCGAGAGCGCGTAGGGCAGCGGCGCGAGCG
GGGAGGCGAGCAGCCTGGCCGTGGGGAGCGCGTGGTGAGGGAAGAGCGAGGCCTTGAGCA
TGGCCGCGTGGAGCTGCAGCAGGTGCGCCGGCCGCGTCGCCGACCTGAGCAGCGCCGTGA
TCGTGGTCACCAGCGGCTTCCCTGGCGACGGCGTCCGCGTCGGCATGGCGAGCGCGCGGA
CGCGCGGTGCGGTGTTTTTTTCTTTAAGCGGTACGCGCGGTGCGGTGGTGTTGGCCGCTT
CGAGTTGCCTTCCGCGCGGTGGGCTGCATGTGTCTGTCTCGCAGTTGAAGGCCCACTAGG
GCTTGCATAAGCAAAGGACGACAAAAGTTTCAAAACCCGGCCCATCAAACCGAACTAGGT
TTAGCCCTACCCTATATAATATCGCCTCTTCCTCCTGGCCGCCTCTCTCCACCGATCCCT
TCACCCCCACCGGCGGCGCGCAGCTCGACGACCCGAGCGATCCTGCGGCGGAGGCGGCAG
CCATGGTGCACGTCAACTTCTACCGCAACTGTAAGCCCCCCCTCCACGCACTCCCGCGTG
TCCTCGTGATGTGCGCTGCTTATGCTGAACGGCGGCGTCCCTCTGGGCAGATCCAACTTT
GGTTTGCTAGTTTCGTGAGCCAGCGTCTGTTGGTTTCTGTCATGGGATTGAATGTGAATG
CTTAGTTCTTGTTTTGATCGGATGAACTAGACGCTTTGTACCCAGTGACGAAGATTTGTA
GAGTAGCTTGGTAGCCGATTTGGTTCTGAAAGTTGATATTTTGGTTGTAATCTGACACCT
GATTGAAATTTATGTCCTAAGACTTGAAAATTCTGTTATCTTCCGGTACTTCACTCGTCT
TAGGCTAATGCGGATTCCATGATGTATGGTTTAGTCTTTGAAGACTTTGATGTGAGATAA
TTAGCACGAGTTGTGCTTTTAATCCATAGTATTCGTCTCCTGCTTGACGTGTAAGTGTTT
AGGCCGTGCCATTTCCAATCGACATTGTACTGTGTTCTGTGCTTGTTTTTGTACTCCGTA
TCTGATTGTTTTTTGGGTGCTTCCAAGTATCTTACGATTTTGTTGTGGTGCAGATGGTAA
GACCTTCAAGAAGCCAAGGCGTCCGTATGAGAAGGAGCGTCTTGACGCTGAGCTGAAGCT
GGTTGGGGAGTACGGTCTGCGGGCCAAGCGTGAGCTCTGGCGCGTGCAGTATGCTCTGAG
CCGCATCCGGAATGCTGCCAGGGAGCTGCTCACCCTGGATGAGAAGAGCCCCCGCCGCAT
CTTTGAGGGTGCAGCGCTGCTCCGCCGCATGAACCGCTATGGTCTTCTCAGTGAGGACCA
AAACAAGCTTGATTACGTGCTTGCCCTCACTGTTGAGAACTTCCTCCAGCGCCGTCTCCA
GACCATCGTGTTCAAGAATGGCATGGCCAAGTCAATCCACCATGCTCGTGTCCTTATCCG
GCAGCGCCACATCAGGTTAGCTGTCCATGCTTATCCTTCTCTTGCATACATTCTGAAATT
TACATGGCTACTAGTTAATTCTATCGTGCAATATCATTCAGTACTCACCTGGGAATCAGT
AATTAACAATGAGATTTTGACCCTATTGTCATTTTGTAACCAACAGTTTTTTGCTTCACT
ATAATATTATGATAAATCATCTGCAGAATTAATGTTTGGATTTGCTTTGGTAATTTAGAT
AATTGTTTTCTATATTTTTGCCTGTTGTTATACATTTTGGCTTGTGTATCTATACTGATT
GTAGAACACCTGACTTGTGCTTGTTCATTTTGGATGGGGCATATGATGAGAAACTGTATG
CACACTCATGACGGTCGTCTAAGACACTTTGTGTGTAATGTTGCAATCATATTTACTCTG
ATGTTCTTAACTCTTGTTCAACTCTGGGATATGCTATTCATGATGGATCACTCTTGAACC
AATCCTTGTAAACTGTAGTTGTGCCAGACATGAATGTGATTATTTGTAGATCATGCTTGG
TAATTGTGAGGTGGCCTTTTTCTGTTGGTTTATGTTGGGTGGTTTGTTTCCAGTTTTTTT
TGGCTGATATATGTACATTTTCGGCTGGTTCATCTGTATTGATTGAATGATACGGGACAT
ATGATGAGAAACTGTTTGTCACTCACGACGGTCGTCTGAGACACTTTGTGTGTATTGCTG
CGATAACACATTCTCTGATGTCCTTGCTTTTTGAGCTTTGCAAGTTTATTCTGGAAAATT
AATTCATTCTGAAATTCTTTTAGTTTCAGAATCTCTTGTTCAAATCTATGGAAGTTATGG
CAGATTTACTCTTCCATTGTTTATTTGCTACTAGTAGTACAGTATATCTTTTTTGTGTTT
ATTTTAATTTGAGTGTATTGATTATACTTAGGGAGCTCTTTTTCATCTATCTTGTTTTAG
ATCTCTTCCATAAGGTTTTACCCTTGTATAGTTTTTGGATGGCACAATGAGGAGTTAATA
TATGTATAGAGGTTGGAATACCAATGACACTTCATGTCCTTTTCATTCTGAGTGCCTTAT
TTGGCTGAAACCTCTTATATTTTGATTGATATGCTGTTTTCTTCCTCTTGAGCTTTATTA
TAGATTTGGTAGTTGCCTTTCTCTACCAGCCTTTTCATTTTCTGGTGACATATTCAGAGC
AATTGTCTCTGAACAGTTAATTTTGTGGACGGACATTTCTGGTTAACCTTGGCCTAAATT
TTGCTTATCGGTTTTCTGAATTCCCTCTGTGAGGAAGTATATGTAATCTAGACACTCTTA
TATTTCTTTACGGAGGGAGTAGATGTGAGGCATATTTAATGATCAGCACTCATTCTTGAG
TTCTGTTTCTATCCTTTGATGATCTGACTGTTGTATGTTTTCCTCCACAGGGTTGGAAAG
CAGCTCGTCAACATTCCTTCTTTCATGGTGAGGGTTGACACAGAGAAGCACGTCGACTTC
TCACTCACCAGCCCCCTGGGTGGTGGCCCTGCTGGAAGAGTGAAGCGGAAGAACCAGAAG
AAGGCCTCAGGAGGTGGTGGTGACGAGGGCGAGGAGGAGGAAGACTAAATGCTTGGCCTC
GCCCCTCGTAACTTTTGCTGCAGAAATGATTCGAACTTTGGCTCGAGCTTAGAAACTAAG
TGGTGCAGAGCTTTCGTTTCTTTTACTCAGAATCTTGCTTTTGCTGTCAGTTCTAGAACT
AAACTTGTGGGTGTCGGTTTTGCTTTGTTAGTAACTACCGGCTGAACTCAGTGCCGCTGC
TTCATTTTTGGTGACCTAAACGTATCTTCTGCACGTGGTGTCACTGTTGTTTTTGCTATG
TTTATCCTTTTGCCTACAATACCAAATTCTATTAGTTTTGCTGTTTGGTTATGCACTAGT
GATATGAATTAGTGCCAAATTCTAGTGTCTAGCGTTTTCGAATTTTATTATAGGGGCCAC
AAGTTTTTATATAGAAGAAAATATCGTTGTCTACAATACCAAGTGCAGTACTAAACCATG
GCATGCCCCTTGTTTCGTGAAAAAGAATTGTATTGTGGCCGTTTCATGTTTTACGTTGGT
CTATGAACTTCTTTCAAGCGGCGAGATAGCCTACAAAGTTTTGGACAAAACTGTTAAACT
GACTGGGCCACGGCCCGCCGCTTGGCGATCGTGGCTGGCGCTATCCCTTCGTATATAAGC
ACAGGAAAGATCATCATTGTAATAGAGACTTCATGGTTAATATAACATTGTTCTCCTTTC
TATTTCTTGGTGTTTTATGACTCTGTGTGTTCGATTACTTCGTCTGTTTCATTTTCGACG
CTAGCTCAGCAACCTTGGACCGGACTCGTCGGAGTTGCGGAACACGTTATCAGCATGCTT
CACTCCATCAACTCTCCATCGAGCTTGCAGCAAGCAGGCTTTCGTCAATCGTATTGAGGT
ATAATTCCGATTCCCTCTTTATAAAAATGGATTTCCCTCGTTGTCACGATTCCGTTTTTG
CGATTAGTTTTATTTTTCGGATTTGATCTACCTACCGGGTGGATTTCTCTTCCAAGAACT
TGCTGACAAACACGTCGCCGATCAATGTCGATTTTTTGGATTCAGATAGACTTGTTGACT
ACACCTAGGGAGACGATGCTCGCACGTACTCCAGTTGAGCACGGCCGAGATGTAATTCCC
GAGCTGCTACAGTAATTCATAGCGCTCGTGCTCGCCATCACGCTCGCATGGCCACGTCTT
CTGTGCCTTGCTGGCCGCACGCGCTGCTCGTCGCTTGCAGCCGCAGCTCGGCCCCCGCTG
GCCTCGGCCCTTACTGGCCGTGGGGCCGCACCGCGCCTCGGCCCCTGGCTGGCCTCGGCC
CTGCTGGCCGCGCCGCGCCTCGGTCCGTGCTGGCCTCGCCGCGCCCTGGCTGGCCGCGCC
CGGTGGTTGGTGGCCGCGCCGCCGCGCCCGGTGGTCGCGTCGCCCCTGGCCTCGGTCCTG
TGACGGCCACAGGGAACCCTAGCGTCCCCTGCAAGATGGGCCGGCTCGCCCTCCATGGGC
CTTGGTGGGCTTGACCGGTTTGATGGACTGAAAAAAATGGCCGGGTCGGACGGGAATAGT
CTCATTGGGTTGTTTGTAAAAAAAACATATATCCTGGCTTTAAAAAAACGCTCGGAAATC
TATTATTAAATAGGGGTAATATACTATGTCATTTAACATGATTTTAATATATGTTTTTAC
TACTACCAGCAAAAGAGCCCGTGCGTTGCAACGGGAGAAAAAATAACACGCGCTCTTATA
ACACAATAACCACGACTCAAGACCTTAATAGGTCCACGTCTTTTAGTTTCAAATGACATC
ACATTTTAAGGTCTCTCTCTTACACTCACATTATGTTCAGTGTGCTTAGTTACAGAGGGA
ATATACGCCAACTCGATGCATATTTAATTAACAAATCAAGAAATCAAAGCATGAAAGAAT
ATTGTGTACATATATTCCAAACAATTTAAATGTATGTCATCTGAACTTATATTATTAATG
AACATATAATAAGTAAACATGGATATGATCTTACTTGATGTTTCAAGTTGCATGGTCTCT
CTCCTCGGTGATGCCCAAAATATTTGCATTACGATGAAATAGCGAACTATGTTTTATTAA
TTAATGATAGCATATGCATAAGAGCATTATTTTTGTCTTGCTGGTATAAGTGTTTGCATT
TGTAATCCAAGTAAAGTCTTAATTTGGTTGNNNNCATATTAGACAGCTCCATCGAAAACA
ATCAAGTTGTAAGTACATGCATGCCAAATGTTCAAGGTTGCATACCAACATCGATATACT
TAAAAAAATCATTAGCAAAACATTTTAAAACAATATGAAAAATCAAACCTAAGCCATTAG
TTTACATAAAGTTTGTATAAGCATCATTGTTCAGTTTTTTATACTTCCTCGTTTACAAAA
TAAGTGTCTTAAGCTTAGTACAACTTTGTATTAAAGCTAGTACAAAGTTGAGACAATTAT
TTTGGGACGGAGAGAGTACATTAGAAACATTTTTTTTGCGAGTAACATCAGAACAATTTT
ATATATACACGTTTGATATTTTCAATTTCATGGTTAACATTTTTAAAACATATTTAGTTT
TGATGTCAACTTTTTTATACAGTCTACATATTTTGTATGCATCATGAACATTTTTTATAT
ACATGTTTGACATTATCCAAATACACGATTAACATATTCGAAAAGATATATATTTTTATG
TCTACTTTGTTCCATACACATTGTTTATTTTTGTATACTTATACATCAAAAACATTTTCT
ATGCACATTTAAAGTTTTTTAAATACATGATCAATATTTTTGAAATAAAAGAAAAGTATA
TTATTTATGATCCCTATGCACTGTACATTATTTTGTATATATGGGAACTTTTTTGTTTAT
AAGTTTGACATTTCTTAAATCCATGATTAATATTTTTGCAAAGTTTATACCAAAAGAGAA
AAAAATAAAAAAAATATAGAAGAACTGAAAAAAGAAGAAAAGAAAAAGTGCTGAAGGCCG
GGCTAGGCCACCCCAATCGGGCAGCCATGCACCCGCCGTTACCGAATGAGAAAAGGTGCG
AGAAAGAGGGTTCAAACCGTGGTCTCTAGGGTGGAACCTAGAGCGCCGAACGAGTTGAGC
TAACCATATGCTTGTGATGAGATAGCGGGACAGCTGATCTTGAATTAAATAGAATAGCTG
AATCAGAGTTGAAAAAACGAATCAGTGGTTTCACTTACCGGTGGCACAAGGGGTAATTCA
GGCAAACTTTAGGGGTATTTTTTATGACGGACGACAGAAGCTATATTTGCTTTATTAATA
GGTAAAGATAGATTAATTGTTCCTCACTTTTAATCATTAGGTAAATCATATAATAAAAAT
GTATTAAATAATGAATCGTCATTTCTTATTGAATAAGTTTTCCTACCTTGCATTTATGCA
AAAGATTACCTGCTGTAATCTCATTATTTTTGCATAAACTGCAGATGGCCGGAATCGTAC
ACGGAGTTTCCTGAGTTGGCCCACACATGGCTAAACTACCTGAGCTGGTCTTCCGACTGC
GAGATATGGTTCGAGGGCAAGGGCCTTCTGAGAGCGATTGGTAAGGGGACCCTGCTGGCC
CCCACTCACCCCAAGTTC