morexGenes - Barley RNA-seq Database

Contig contig_40843
Source Contig contig_40843
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_40843 (7702 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_40843

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_56451	2	4015 bp	MLOC_56451.1	Available	Available	LOC_Os01g44050.1, FRAME:+2, EVALUE:2e-166, 13101.m04563 protein siroheme synthase, putative, expressed
CDS Structure of MLOC_56451

Contig Sequence (7702 bp)

>contig_40843 7702 assembly3_WGSMorex_rbca.fasta
TCAGTACTTGCAGTTATTCCTTGCTCAAGATCGTTTGTCAGTACCTTCTGCTCCTCTTTG
GGTTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTACACTTGTGGGTCATC
AATGATGCTCGGGTGCATAGGGATCTTAAAGTTATTTTCCTTGTTTTGCCTCCAATAGCC
CCATCAATGGTGAACAAACGCTTTCACATGTGGTTGCCATTTTCTAGATACCAAGTCAGA
GTACACATGAGGTGTTTGGTGAATACACTAGAGTTGTATAAATACCCCCCATAAGTTGCT
AACATTTTTTCTGTGCCACTCGAGTGTATACAATCTCAAAGTTTTCTACCACAACCAGCA
AGTCTATCATAACTAGCTTCATCTCGAAGTTGATATTGCAATAGGAAACTTACTTTCTGA
GGTGGCATAAGTTGCATGCCATGACTAGTGAGTAGACTAACATTATCCTAGGTTGTATAC
AATACTTTTTTTGGTGTAGTAAGCAACTTACTTTCGTATATAGGTAGCTTACCAACATTT
AGAGGGAACTTTTCAGTGTATTGTAGGCAACTGGAACAGTAATAACAGTTAACTGGGCAT
CACCGATAAGCAGCTTCATAGTGTTTTTAGGCAACTTAGAGAAAAACAATGATAATCAAC
TTCATAATATTTTAGGCAACTAATTTGCAAAGTTAGACAACTGAGCATTTATGGTAAGCA
ACTAATTACCAATAGCAGCTTACTCGACATCAATGGTAATTTCATAGTATTGTAGGCAAC
TGGACATTAATGATAGGCAACTGAACATCCACGATAGGCAACTGAGCTACCATGGTACGC
AAGTCGTGATAATGTTAGCAAAATTCATTGATACACATAATGCAATGAAGTTGCTTATAT
GTAACACTAAAGGTGCCTCATGCTTATATGTAGCACTAAAGGTGCCTCAAATATTTACAC
TAAGGCCTTGTACAATGCAAGGTGCTTAAAGAAATAAACCAGGCTTTTCTTAAGCACCGA
TGCTTATTTCTAGAGGAGAGGTGCCTAATTAAGTGTCTAACTTGTATAAATAAGCACCAA
TGCTTAAGAAAAGTCTGGTTTATTTCTCTAAGCACCTTCCCTAAGCACCTTGCATTGTAC
AAGGCCTAAAGGTGCCTCCATCATATCCAAAGTTGCCTCAATTTTTTTCAACGAAACCTA
TTATATGAAATTTAGTTTTGAAAAACTCGCCACGAGAAACCCAGTTATGAAAATAGAACT
GAATTCTAAATCAAAAGTTACAAATTTTTAATTTTTTGAACCCTTAAATAAGTGCAACTG
GAAATACGGTTATTTTTTATGAACTACTTCCTCCATCACAGTTTAGAAGGCATAGTTAAA
TTTACGTGCATTTTCACAATAGACAAGATTTATGGCGTATTGCATTTACTTCTAACAGCT
AATTAGTACTCCGTTGTACTACTTCTATATGTATATGTAGTGTGAATGCTATTTTTAATT
TGTTGTGACACAACCAATCAATGATCATTTAGGTTTTAGAGAATTTTTAAACATGCCTTC
TAAACGTGATCGGAGGGAATACCTAAAACAACTGCTCCTTCCATATTAAGAAGCGCGTTC
AATCCCACCAACAAGCTCTGGCACCCGCCAGCCACGTTCATATTTCGGAGACACTGAGCA
GATTCCTTCACCACCATCAGCAGAGGTTTGGGTATATATCATCTAAAAGAAAAGGTTTGG
GTATATATGCGCGCGCCGGTGACACACTGCATGACACCATCGTGAAGGCCGCCGGCGGCG
CACCAAAAAGTGCGCCGAAGGGGCACTCTCAGTTGGCTACCTCCTGAACCCTGTTGTCTG
CCCGCGGCGGTTCATTGAACCTGGCCCTTCCACACTCGCAAGGCCGCACTTTTCTAATCA
AAAAAGGAAGGGCCACCTCCTCCCTCCTTCCTCTGGACTCCGATCCCCTCCGCCCTCCGC
CCTCCACCCCTTCGCCCATCCAAAACCACACCACCACAACGAACCACCCGCCTCCGGCTC
TCCGGCTCCTGCTCCGGTCCTCACCTCACCTCTCTCCCGTATAAAACACCACCCCCTGCC
TAAATCCACGGTCCACACCCCTTGCGACGCCATGGCTCTCGCCCTTCGAGCGCCCCGCTT
TCAGCCGCTTCCCGCCTCCATTCCCGCGACCTCCACCGCTTTCGCCAGCACCGCGAGGCA
TTCCTCCTCCGCCGCCGCCATCTGCGCCGCCGCGTCGCCGTTCACCGAGGCCACGTCCTC
CTCGAGATACCGCCGCGACGCCTGGTCCTACACTGCCCAAGACTCCTCCTCTCCCTCGTC
CGCCGCCGCCGCCGCTGCTGCTGCGGCCTCGGGACGCCGGGACGACGAGATCGCTCTGCA
GCTCCCGGAGCTGCGGAGGCTTCTGAAGGCTCTCAGGGCGTCCAGAGGGAAAGGGCTGGA
GGGGAAGGACGGCGGCGGTGGGCCCGGGAGGGTGGCGCTGGTGGGGACGGGGCCCGGGGA
CCCGGAGCTCCTGACGCTCAAGGCGGTTCGGGCCATCGAGGCAGCGGACCTAGTGCTGTA
CGATCGCCTCGTGTCCAACGAGGTGCTCGATTTGGTCGCGGAGGGCGCCAGGCTACTCTA
CGTCGGCAAGACGGCTGGATACCACAGTCGCACTCAGGTCAGTCACAAGGATCATTCATT
CCGTGTTCCTAGTATTTAAAATCAGGTGCTTTGAGGTTTATATGTACTCTAGTTTGAAAC
TCCAATGATATGTCTGCACTTTCTAAGTTTTTCGGCTTTCTAATGTAATGCAGGAAGAAA
TTCATGAGTTGCTCCTGAGCTTTGCCGAGGCTGGTGCCAATGTGGTGCGGTTGAAAGGCG
GCGATCCTCTGGTAATACGCACTTCATATTTTCAATACTACTCAGTACTGTAGTTATCTA
CTAGTACCGTTCTACAATTCTTGTAGTAGTCCCAGTTGGTAGTTGGTACAAGAGAGGCCA
ATTTCTGTATGGCTTTTCGCATGAAGTCCTTGATCCTAGAAAAAAAGACGGATTGGAGGA
AAGCAGCCGAGTCCTAATTTAGGATTTGTTGCATGTGCATCAATGTTAAATAGCAAACTC
TGTACTGACCGAGTTTATCGAGCACTATAAACACTTCTCGCTCCAATAGCCACTGTTCTC
TAGAAATACTTCTCCATGCAATATCTATAATGTTCTCTGCTCATAGTTAAACTCCTTCAG
AGGTGGTAGAGAACAAAATATGCGTCATTTTAATATAAAATGCTAGCAAGAAAAATATCA
CCCTACCTGTTAAAATCCCAACATTAGGATGCTTGTTCCTATCTTTTATTTTTTTTGTCA
CACATAGATATCCTCACACTCCAGCAGAGAAATCACGTTAGTGATATACTGATATGCACC
TTTACCTTGGAGGAAGTATGTTAATCGTCTTCTTTTCAGGTCTTTGGAAGGGGTGGAGAA
GAGATGGATTTTCTACAGCAACAAGGAATTAAAGTTGAAGTTATTCCAGGTATAGTAAGC
CTGCGATGGCGGCTTGGATAATTTTCACTATTTGCCATGAAACAGGTAATAATTGCTTGC
GCCCAAACATCTACAGGAATTACCTCTGCTTCAGGAATTGCAGCTGAACTTGGTATTCCG
CTAACCCATCGGGGTGTCGCTACCAGGTAAAGTTAGCATTGCACCCGCTTCTATCATTCT
TGTGATGTGGCCGATTGTTCTAGTTGCCCTTTATCAAAACATGCTTTTCTTTGAAATGGC
TTCTGTGTAATCTTCGTGACAGCTGATCAGTTCATTTTTATCATCTGCATCTATTTCTCA
AATGCAACTTGAAATTTCTGTCTGATTTAGTAAATATTAAAGTTGATGTTTGATGCTGTC
CTAGCTTAATACTCCAAAATGCATGCCATTTGCTCAACGTAATTTGACTATAAAAGCACT
ATAGTGGAAATACTATGTAGTGTAGTGGAAATACTTTGCACCAGTACTCCATTTGCCTAT
CTCTGCGTTCTTAAGTCCTGTAGCTGAATACAGAAGCAAGAAAAATCTTTTTTTTTAATG
AGGCAAAAGACTTGCCATTTTCATATATATGAAGAAAGTGAGAATTACCCGGTTAATTAC
GGAAAACCAGGTTAAAACCGATACAACCACCCACGCCGGAACATGACAGTCTTGATTGCG
CGGCCATCCAATCTGGCACACAACAGATACACCACACACACTGTCGAGGAGGGAAGCACG
CTGAGGTATCTGTTGTGTCATTGTCATCACTCCTTCGGGAGCAAGCGACTCTGACTTTGC
CATCGATGACCACCGAGAACGCCCTCAGCACAATAGTCTCATGAAGTCACTAAGAACAGC
CAAATAGTCGGCCACACACACTGGACATAAAGCACCTAAAAATCGGAAGGCGAGCTACGG
CGGAGAGAAATGCAAGTTTTGCGCCAAGGAGGAACACAATAGCCGGACCGCCCATCACAT
GTCATTGTCACCACCCAGATGACACCGACACAGCTTTGTCTTCAGAGCAACAACCAAACC
GCAGTGAGACCATGGACTCGCAAAAGAGTTTACTACCAAAGCCTGCCGCAACCCTGGCAT
TGCTCATCCCTTCATCATTGGCGCACAAGTCCCCAGACCAACCACTGCCAACTTCCACCG
ACGTATAAGCGTCATCATCATCCGACCACACGGATTCCCCCTGGAGCTTATCTCAGGAGG
GGAAAGAGAGCATCACCTTGATGAAGCCTTCAAGAATTAAACAGTAGTTGGAAATGCCAT
TGCTGTGGGCCCCAGCCATCGGCCAGAGACAGTGGGGACATTTTTTGCCATCCAGCAGTG
GTCACTAAAATTGTCCGGACTGAAATTCCACAAACAGGAACCAAACTGGGGGGCGGTTTG
CGGATGTTCGGACGTCCGCCACGCAGACATCCGATAAAGTGGACGAACCCAAAACTGCTC
GGTCTCCGCCTCGCATTCATGCCTGTTCAGAGTGGGCGTGACTGGATGGAGTGAGTTCCT
ACCGCTCACTCAGCTGGCTGACCGGCTGTCCGCCTGCCCAGCATTGACACGGGCCGGCGA
ACGAGAAACCAACTCTGGGCGCCCGCATTCAAGCCGCCGTCTTTGGTATCTCCAGCCCAT
CACAGACAAGACACATATCATGGTAATACTTTTTCCTGGGTGAAAGGAATGCCCTGCCAT
GCCTGCAAAAACTTTGGTTGAAAATAAGATGATTATAGATATCATGGTAAAGAAACAGAG
TGGCGAAATTAATTGTTGGTGATACATTATGCAATGATAAAGTGTTTATGAATGCTGAGC
AGCACGTTTTTTACATATGATCTTTTTTTGCAGTGTCAGATTTTTAACCGGGCACTCTAG
AAATGGTGGGACGGATCCTCTACATGTGGCAGAGAATGCAGCCGACCCAGACACAACTTT
GGTTGTGTATATGGGTTTGTCAACATTACCATCACTAGCTCCCAAGTTAATGAAGCACGG
TCTTCCAGCAGATACTCCTGCTGTTGCAGTAGAGCGTGGGACTACCCCCCAACAGCGAAT
GGTACCGAGTCATAGAGCCTTACCATCTAAATTGTGTTCCAGCCCTAGCTTTAGATGCTG
AATATTTCTTTTGCTGTAGGTATTTGCAATGTTGAAGGATCTTGTGAATGAGGTCCACTC
GGCAGATCTGGTTTCTCCAACTCTGATAATTATCGGCAAGGTGGTGGCCTTGTCACCCCT
ATGGGTTGAGTCATCTAAACAAGATGCGCTTAATAATGAGAACTCGTCGCAACTGAGTCC
AACAATTTTTCCTGTATAAAGTACAAGGGATGTTAATGAACGTCACGCTTTTGGAACATT
TCCAAATTGAGATCTAAGGCTATATGATCTGGTTTTAGGTTAGGACATGCAAACACAGGG
CATAGTGAATCTGGACAAGAGAGCAAACACAGGGAGCATATATTTTGAATAATATTGCAG
TTGCAGAAGGCGTACATAAAACCACAGAGAACAAGAGTTCAGTTTAACCGGCGGCGACAG
TCCATGATTTGGCTTAATCTACTGAACTGAGCATAGTTTAGTTTTGGTCTTGGACCATAT
GTATATCTTTCTTGAATCAAAGGTAGGATCTGTTTTGTTGTCTCTGTCGCATTACTTTGT
TTTGGGGCTACTCTTGAAACATGTTGAGCATTGTATGCCAGTATTCTGTCAGGCTCATTT
GTTTGGTTTAATAACGAATTTTGAACAAGTTCCACACATGATCAGTCGAGCCGATTCTCC
CTATTCATGGACTAGTCTCTGAAGGTTTCGGTTGGAAGGCAAATGCATAGACTAGTATTG
CGACCCTTAATTAATCATTAGTTTTGATATATTTGAAACTAACACTAGTATGAAGTAGAA
GATATGTGAGAATGAATGCATTGCAAGATATGTGGTCCATTTTTTTTTCATTGTTATGTA
TATATCATATGTATGATAAATTTTTCCCTATGTTGAATGCAAAATTGTATTGATGAGGTT
CAATGCATTGCAAGATTGTGAAGATGAATGCTTTGCAAAATTGCAAGATGGTGAATGCGT
ATGATGAAAATTTGTGTATTTCCTATAGTTGCAAGTGTGATGGTGAACGCATATGATGAA
TCGTTTGTGTATTTCCTATAGTTGGAAGTGTGATGGTGAATGCATATGATGAATCGTTTT
GTATTCCGGTAATATATGTATTGATAGTGTTTTCCCTATGTTTGCAATTTGTACTGATGA
TGTATGGATATAGTTTAGTTTCCTATAGTTTCTTTCTATTTGTATGCATGGATGATGTTG
TCTAATAATTGATAAAAACATATATTGTGTTAGGATGGCCGAAGATGAGGACAATGGGCC
TGTGTATACGGGGCTGGACCTTGCTTTCGATGGGACCATCGTGGTGTGTTATCGAGCGTG
GAGAGATAACAGAGGATGCCATAATAATTTTAATGTTATTGTTTTCTTAGAATGGAGGTT
TCGATAGATTTGTTCATTTTGAGAGAAACTTATGGTGGTGCAAATGAGGGGTCACACAAA
GACTAGCAGTGATGGGGATATGTACCTAGGGTAGGGTCTTAGGCCTGACCTACATGCCCT
ACCTAAGGACACTACATTGAGGACTTAAAGACTACAGGGAAGACTCCGACTGGAATCACC
ACGGCGCATGAGTCACTCGACACTACATCCACTCGAAGGTTTCTCCCTCCATTCGACAGT
TGCCTTTCACTCGGAAGAACCAGAATCTAGTCGACCGCAGAAGATCAGAAGCCACTCCAG
GGAGGCCAACAGGTGTTCGACTGGTCACCATAAGTAGAACACTGGTCGCCATAAATAGCA
TTTATTGCATACGTTATCAGTAACGTTCACCTTTATTACCATGATCGAACCCTTGGTTGC
CGGGGATGGATGAGGGGCAACACACTCTATATAAGCCACCCCTCCCCTCTGTCACAAGGA
TTCGCACCCCCTGTAACTTGCACTTTTCACACGACAGAAGCTCCTGAGCACTGAGACGTA
CGACTGTTACCTTCACGAGAGGGGCCTGAACTCATACATTCCTGTGTACAAACTCGTTGT
AGCTAGGACTCTGCCCTCTCCTTACGTACCCCTAACCTCTATTGTCAGGCTCGTTCTCAC
GATAGTTGGCGCCCATCGTGGG