morexGenes - Barley RNA-seq Database

Contig contig_40784
Source Contig contig_40784
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_40784 (5683 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_40784

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_56391	4	3995 bp	MLOC_56391.3	Available	Available	LOC_Os02g44480.1, FRAME:-2, EVALUE:0.0, 13102.m04965 protein pentatricopeptide, putative
CDS Structure of MLOC_56391

Contig Sequence (5683 bp)

>contig_40784 5683 assembly3_WGSMorex_rbca.fasta
TGTTTCAAAACAAAAGTGTGTTGTGGCTGTATGATTCTATCAGCAATCAAGCTGTGACGA
TGAGACATGCTCTACATGTTTATATGTGATGGAACAAATGAAAAAGTGTAAAGTCAAAAG
TAAAAGTCGAGATCAAAGGGGAGAATGTTAGATTGATTTCTCTCGCCGCGTGGGCCCAAC
GGCCCAACGGGCCTTGATCTATGCGCCTTGATCGGGAGCGCCCAACCCATTATGGTTGAT
GGGCCCCTGTGACTCACGCTATATAAAGAACGGTGGGGTGTCGGGGCACGAACTACGAGA
TTCGCCGCCGTCACACCCCTACCGACATACCTATCCGATCTAGGTTAAGCGCGGTGCTCA
CGGGAAGCTCCACCCACGCCTAACCCATCTTCTCCATCACCGCCGTCGCCACCACACCGA
TAAAGAACGATGCAGGCTCATCCGGCTCAGGACAAGGTAATCACATGCGATCTACCGTGA
CTCATCTACCCTAGTCGATCCGTAGGATCCATCAAAATCAACCTAATCTACTATTGCCCA
GAAACAGTGTAATACAATTATTTGAAGGAACAATTGCGCATCTGTTGCAATCTGGGTATG
TCCGTTTGCACCCGAAAATATGACTTGTTGTGACGGCAAAGGTTCCTGATAAATATATAG
AGGCAGATGACAGTATCATGAACAAGAACAACAGATGAGATAAAATAAATCTTCTTTTGT
GAAAATCGGCGGTTACCTACGCCACATTAGGCTTCACACCTGGCATCAAATGCAAATATG
TTCTAAGTTTACAGCAGTAGTCAGAGACTATGGCACCAAACACGGGGAATAACAAGAATG
AAGACGGCATACAGTCTCATACAGAACACAACACTTTGCTTCCAGGAAAAGAATGGCAGG
GAAAATGGATGGTGAGGAACTGCAAGAACAGGAACCGGTGCTCCTGCTCCAGGGGTGGGT
GCGGGTGTGGGTGTACGTAGTAAGTAGCCGGGCTCGGGTTTTCTCTTCTTCAGAGGGCTC
GCGCCTTTACGATGTCCATGCTCATCTCGCTCGGGTCAGTCGCCTGTAGCTCCACCTGGA
TGCCGTCCAGCTCCCTCTTGAAGCGGTCCTTGGAGCTCGCGTACAGCATCTTGCTCCTCA
CCCTGGATGTGTCAGGAGCCCTGCCCAAGAAACACCACGATGCGCAAAACGCTGCTTCAG
TTTTCAGCTCAAAGTAACAGGAACCAGTTCTGTTTCGTCGTGCATTTACACGATCATGCT
TAAGCATTTATGATATTGCAGGCAATTCGTTATGTACAGACTCCAGAGCACTGAAACCAG
GAAGCAGCTTGTCAGAAGAAACAGCCTATGGCCTTTTTGGAGTCTTAATTTGAGGTCACA
CTGAAAACTGCCCACTACAATATATACGGGGAAAAAATCAAGGCATGTCTTCCTTGGTGT
TACGGTCTGTAACACAAATTTGAATTCCAATACATAATACCAAATTCTTGAGATTCTGAT
ATTATTTTCTTAAGATCCATGCTTCCCTGCCTACGCTGAATTTCTATTTCCATTTTTTGT
GTGGTAAATAAGCTAGTAAGTGTCTTCCCGGTTCCTTTGCAAGCTGATCTAACAAAATTA
CACGCTTTGGTCACCAGTGGACAATGGAATAAATGCACTAATTTAGTGGCAAAGTGTGTT
AAATTATGGCTTGTATAGAAACCAAATGATCAAAGATAAAATGAAATACCGAACTGCATT
AATCTAACACGCAGAGGCGACTTTGTCAAACTGAATCCCATCCGAATTCATAAATTTGGA
CCAGCAACTGCCTTCCATAAGATTGAATAAGAACTCTGTAATATACTATGAAAATGCAAC
ACCCTATGATCATTTCAAAAAAATGTGATCCAAGCAGGTGTTACCAAGAGATGAAGAAGA
TCTTGCTCTTCTGGCAGTTCTCATCAGTGACGAAGTCAAAATCAAATACCGCATAGCGGC
ACTCGTCAGCAGGCAAGCAGGCAGCGAAATCATCGTAGCTCTCGTTTTTTTCCCCGACCC
TGTCCACCACCACCTGCTGCACCTTCTCATTGATCTTGAACACGATGAAGCGGAAGCTCC
TCTTCGCCTTGAGTTCCTGGAACTTGAGTTTGCATTCGTCGCAAACAGCCATTCCTGACG
CGGAATTCGACTTGCAACAAGGAATCCCCATAACATGTTAACACACACCCCATTATAGGG
GAACGATTCCTTGAACAGCATTATGAAAGAATGAGGTTGGGCTGTACTCACCATGGTTGA
TGCCTTCTCTTGTTTCCTTCCCTCCTTTCTTGGGTTGAGAAGCAAACAGGGGTGTGGCGA
GGGGAAGAGGAAGGAAGGGAGGGGGGATGTGCAGCCGCACAAGCAGGGGCAAGATTTGAA
GGCCTGAAAGAGAGGAAGCGGAGGCAAAATATAGGGAGGCCTGCTGCATGATGCCACCAC
ATCCGGGGAGGGGCTTTTGACCAAGCATGGCCCCTCCTTAGTGTGTGAGAACCAGAAACT
TTTGTGTCCAACCAACATGCGCGCTACCACCCATCCCTATAATAGACAGACCTTCCCTCA
GCGAAATCTTTGCAGCATCAAAACAAGGGTACATGGGGACATGGGGTGGTCTGTATTTAC
TCTTGAAAAGACACTTCCTTTTTATGGTGTCATGTAAAGAAAAAAAAATCCGTTTTGATA
TATATGACACGAGTACAAGACTTGCATTCTATAAAATCGCCGTTCGGCATTGTTCAGACC
TCGTCTCGACCAAACTAGATCCCGATTCTTTGATGAGACCTTTTCGTTCCATAATTTTTC
GGACTTCCTGAACATCGTTCCATCTGTCAGCTGCAGCGTATATGTTCCCAAGGAGCACAC
GACTGCCGGTGTTCTCCGGCTCAAGCTCAAATAAATGCTTCGCCGCAATCTCCCCAAACT
CAACATTTTTGTGTAGAACACAAGCACCCAGCAGAGCACCCCACACCGAGGAACTCGGCT
CGAATGGCATATCTTTGATGAGGTAGTAGGCCTCCTTGATCCTCCCAGCACGGCCAACCA
TGTCGACCAGGGACAGGTAGTGCTCGACATTTGGCACCACGCCATGAATGTTACGCATAT
CCTCAAATAGCTGAAGGCCTTCGTCTATCAAGCCTGCATGGCTGCAAGCGTACAGCAGGG
AGGTGAAGGTCACGGTGTTCGGTTTCACCCCCAACTCCGTCATCCGGTCATATAGCAGGA
TGGCAGTTTGGGCATGTCCATGCATACCGTACCCAGTGAGGATGGCGGTCCAGGCAATAA
CATCCTTTTCAGGTAGCCTGTCGAAGAGTGTCCATGCTATGTCCAGGTCACCTGCCTTGG
CATACACATCGACTAAACCAGTTGTGATCGCTGTGCTCCGAAGAAACCCAAGAGTCAGCA
AGAAACAGTGGATGTTCCTTGCTTGTGTCAGGTCCGCAGATTCTGCATACGCTGGGAGGA
TGCTTGCAAGTGTTGCAGAGTCCGGACGCACCGATTCTCCAATCATCCGCTTAAATAATC
CTACAGCTTTCTTCTCCTGTTCACTGCGACTATAACCAGAGATAGCTGCATTCCATGTTT
CTGTCCGCCATGAGCCATTTCGAAGTGTCAACTCCATCATCTTCATCTTATGGCACTTTG
CGTAAGTGTCAATAAGTGCAGTCTCAACAACAATGTCTGATTGAAGCCCAAGTCTAATGC
ACATTGCGTGCGTGCACTTTGCACGCCTCCATGACGGCAAGCTGGAACAAGCTGAGAGTA
GATACGCCATGGTCACTCCATTGGGCCATGGTGCACCACCAGTCATGAGCATGTCAAAAA
CAAGATTAAAGGCCTCGTCCACACGGTCATTCAACACGTACGCACCAATCATGACTGTCC
ACGAAACAACATTCTTGTCATATTTATGGCCATCGAAGACCCTTCGTGCCTCCTCCAATC
CCGCACACTTCCCATACATGTCAATCAACGCATTCTTCACCGCGGCATAATCCCCCAAGC
CTCTTTCCTCAACCAACCGGTGCACAGCTCTTCCAATGCTCAAATTCTTGGCTCGCGCAC
AAGCTGGCAGTACAGACACAACTGTGGCACGGTCAACCCCGGCACCATCCGCAACCATCT
CGCCAAACACCTCCAGCGCTCTTTCTGCACAGCCGTTCTTGACGCACCCAGCGATCACCG
CGTTCCATGACACGACCGAACGGTTCTTCATCGCACCAAACACCGCCTCCGCGTCGTCAA
CATCGCCGCAGCTCATGTACATGGAAATCAGCGCATTCTGCACGTACGCGTCGCGGCCGA
AGCCGGCAGCGAGCGAGCGACAGTGCACAGCACGGCCATGGCGGCCGAGGCGGAGGCCGG
CGCAGGCCTTGGCGGCCAAGGGGAAGGTGAGGTGGTCGAAGGCACGCATCCGGGAGTAAA
GAGCGACGGCCTCCCTGTGGTGGCCAAGGCCGGTGTATGAGTGGAGGAGGGAGTTGGTTA
GGGAGACCGGAGGTGGGTGGGGCATTTGCGCGAGCAGGTTGTGGGCGTCGGAGGGGCGGC
CGCTGGCGCAGTGCAGCATGAAGAGGGGATAGATGCTGCTGTCGTGGAGGTGGCCGGACG
TTAGGAGGAGAGCGTGGAGCTGGGCGGTGGTGGTGGGAGAGAGGGGGGTCGCGTTCTTTG
AGCGGAGGAGGGCCAGGCATTGCCGGACGAGCGGGCTGGGTACCAGTATCATCATTCACA
CAAGAACACGGAGGGCGGTGGCTGCTTTGGCTCTTCGGTCTTTAATATGCTTGAGTTGAG
TGTATATTTTTTTTTATAATAAAACCGAGCTCTCACGCCCTCGACCTTCTTGACCATTGG
ATTTCGTGTTTACTTAGTTTCCGGCCGTCAGATCTTTCTTTAAACAGTTGTTTACCGCGA
GCTCGATTGTGGTTTGAAGGGGATTGAAATGGATTGGAGAGGATTAAATCCCTTACAAGT
CAAATTCCTTCCTAATTTCCTTCAAACCTCTTCAATCATCTCCAGGAAAGGTTTAACCGA
ACAAGGCCTAAAGGAGGGTTGAATAAGTCCTCTTGCTCTCCCAGTTCTGCGACGGACGCT
TTCAGCAGTCCACGAGTTGTGGTGAGTTTAGATGATAATCCAATATTGATCTAGATCTCC
CCCGATTTGGTGATGCTCCATTCGCTCTCTTGGTTTGCTAATTTCACTCCGCTCCAGCAG
GCCCTCCACCTGTTCGATGGTAAAATCCCTCTGTCACAGGCCATCCCTCTGTCGTCAAGT
TTTTGCCTACAATCCACCTTTTCATCCAACGGTTTTGTGTTCTAATGTTATTCCAATCTC
AGCTTTGTATACGTGGTGCCATATTTTTTTCTCTTAACTGACTGATTCGGCAAAATCTTG
GGAGGTTGGTGCTCATATTTTTGTTTGTGGGGGTATTTAACAAATCCGTAATGGCTGCTG
GTCAAGTAGTTCAGATGTGGGACTGTCATACCTCACCTCTTCATGCAAATATAATCCGGA
GGTTGTTTGTTTATACTAGCAAAATGGCCCGTGTGTTGCAACGGGAGAAAAAAATATCAC
ACTGATTTATTAAAATAATAAGCTAACTAACTAGTATAGTCAGTCCTATCCTATTTTGTT
GAGAAATCAACCGTCCATTGTTAATTCCACCATGATGAGAAAT