Contig Data
morexGenes
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Map Locations of contig_407802 (3789 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_407802

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_56387 2 2275 bp MLOC_56387.1 Available Available LOC_Os05g46560.2, FRAME:-1, EVALUE:0.0, 13105.m04975 protein RAN GTPase-activating protein 1, putative, expressed





CDS Structure of MLOC_56387






Contig Sequence (3789 bp)

>contig_407802 3789 assembly3_WGSMorex_rbca.fasta
TACTAATGAGACTAAAATCAAGTTAATGATCATTTATTATCCTCCAAACCCTCCAATACA
GAACTTGCATGAGGAATTAAATGATGAGAGAGAGGACTAATGCACATTTTAGTAGGGGTA
CCCCTGACAAAAAAAATTAACACTAGTTTTAGCCTTGCAGGGGTGATTGGAACTTTAGCC
TCTTAAAGAGANNNGTTTTAGTCTCTTGGATCCAAGCACCTTCTAAGTTTTCTGCTTTGG
AGATATATATATATATACTTTTATATCGGGAACAATTGATCCATCCTTCATATGTAAATC
CAGATGGAATATATTCGAAAAAGGGACGACGGCGACGAGGTTTTCGAAACGTGACCAACT
CGCCATTTCCGTGGCTGCGCAGGGATTGGATGACGGAATCGACCGTCATTGCACCCGGCA
AAGATAACTGGACTGGCGGCGAACGCACAAAGGTTGCGTGCGGCGGCACGCCCTTGGACC
TAATCATGGTCATATGCAGCAACCAAAGGATAGTTACACAGATATCACAGCTTCGAAAAA
GAGAGGACAGAGCATAGATATAGGTTCCCAAACATATCACAGCAAACACATGCCGTGCCA
ATATCCCATGGATTTAAATTTTTAAAAGGGTCCAGGCTTGACCTTGACCAGACTAGTACT
TTGACAGAACAAAGACGGTGCTAAAACGCGAAACAAAAGTTCCATCCGAAAAGTTGCAGA
TAAACCAAACTGGCCGCTTGATTCGGTTCAAAATTCAGTTGAGCCGGCCACAGCTAGGAG
TTCCTTCTCTTCATGCCAAATTCCATCCGATCCGGCAAAACATTTCAGAAGAAGCTAAAA
CCGGAGCAAAAGATACTGGCGGGCTTTAGTCCTCCTCCGCCTCCACCTGCAAGTCCTGCA
GCTTCGAGCCGAGACCAGCATCCTTCCCGTTACCGTCCCCATACTTTGCCTCGTCATCTT
CGTCCTCCTCTTCATCCTCGTCATCAGGGTTCCCCTCGGGCTCGTTCTCGTCCAGCGGGC
CAAGCACGTCCGCCGAGTTCTCGCCTGCCTTCAGGATCTTCCTCACCTCGTCAATGCCTT
CCTCAGGGATGTAGTTCGCGTTCATGTTCAGCAGCAAAAAGCCTGGCTTGTTTGCCACCG
CCTGGGCAAAGCAGCGGGCTCCAGACCTCTGAAACAGGTTTGTGCTCACGTCAAGCTCCT
TCAAATCTGGGTGGCCCTCTTGCAGAGATTTCGCAACCGCCACCGCCCCAGCATCCTTCA
GTTCATTCTCAGCCAGAGTCAGCTTCTTGAGCGACTGCATTGCAGTCAAGCATTCTGCCA
AAGGTTTGGCTGCGTCGGCGGTTATCTCGTTTCCTGCCATCTCTAGGATCTCCAGCTGAG
GTGCCGACTCCTTGAGGACATTCACAATTGCTATGGTGCCCTCGTTCTCAAGATTGAGGT
CGCTGAGGTACAGCTCAACAAGATCACCAAGCTTTGGAAGGGTTTCGCTGAGAGCCACCC
CTGCCTCGACACCAAATAAGTTATCCCTGATATCAAGCTTCTTCAGACGAGTACATGTCC
CCAGTGCCTCAGCCAATGCCACTCCACCATCAGATCCTATCCGTGTTGCTGAGCACCTAA
AGCTCTCAAGATTTGGAGAACGTTTAACCATCTCAGCAATGAACATAGCACCTTCATCAC
CAGTCATATTGTTGTGGAAGTGAAGAACCTTAAGCTTCTCAGTTGAAGGAATAAGCTCAG
ATAGAGCTTTTGCAGCTTCCCCTGATATGCCATCGTTCATCACATACAGTTCTTCCAGGT
TGCCCTGAGATTTTAGCAGCTCTGTGAATGCCCTCACACCCTTCTCACCTAAAGCATTGT
CAGAGATGTTCAGGTATCTCAGTACAGACCCTGCTAAAGCTTTGGAGAATATCCGCATCA
CATCAAGGGCTTCATCCTCAGGCCTTCCGGCAACAAAATCTGAGATATCAACCTCCTTGA
GCTGAGTTCTTATTGATTCAAGAATTGGCCCAGCAACATTGGCAGCACCGATACCAAAGC
TCCTGTTGCTCAAGCAAATCCTGCTATACGAGTTTCCTGGTTTCATTAGTGGGCTCAGAA
GTTCCTTTGCTTCGTCCGCCTCAATGAATGCACGCTTGCCACCAGAAATATCAAATAGAG
TATCAGCAGGCTCCATAGGTGTATCAATAACAGGCGCTTCTGGTTCCGCAGTCGTCCTTG
GACCTTTTTTCAGGACTTCCAGCATCAGCTTGCTTGTTTCTTTTGCATATAGCTGGACTG
CAGAACTCCCATCACCATCAGGCACCGTCTTGAAATGCTCATCTGCAGAAGCAAAGCACA
TCTCTTCAATCCTTTTAGCATTCTCATGAGCCTCTTCTTTGCCCAAAAGGCCATACTTGC
GAGAAAAGATTGACTCATTGCACAGGTTCTTGGTCATCCTCTCCACAAGCATCAGACGAG
TGCTTTCACTCGGTGGCCACAGTTTGATGGAGAATGTCCGTGGCTGGAAATCTTGCACCA
CTGAAGCCATGTGGTTACGTGGCACTTCACACAACAACCTACTCGTAAACAACAAGTATA
GGAATTAGTATGATCCCAGATTACAGAAAGTAATAGACTATTAAGTAAAACAATGAAATT
AGTGGAGCAAAACTGAATGGCCTGTCCCTGAGGATACCCAACACTATTACACTAGTATCA
CCAAGCATACATCAAAACACCAATTCGCAAAACATAGTTTAAGTCTAGAGTTGAAAAAGA
AGATCGCCAATTTGTAAAGAGAAGCATTTCGCTCAACGTGTTGGTTTACATAGGAAATCA
ACGATACAACTAGAAATTACAGCATAACCAGAGTTCAACCCAGCACGCGAAAAAATAGTG
TGTGATGTTGTGATGGCTGTATTTGGTTCAGCTGTGGCTTAGCGGGAAAGTAGATGTGGG
CTGTGTGCTATGAGAAAGCAGTAAAGTCATTTCGCAACTAGCTGTCTGGAGTGTGGAGTG
TAAATGTCCGGATTACCACTAAAGTCTTGAGAGAAACGATAAGGATATCTTTAAAAGTTG
ATAGAGCTACAAATGACCATGTGGATAATCAATACACTAGCAGGAACTTCCTCCATTCAG
AAATATAAGAGCGTTTAGATCACTATAAAGTAGATTGGCACGAAAGCGAAAGCAGATTTG
CAGGTTTTAGATAACTGAGCACACTGATGACAATAACCAGTAACATGTACCTACAAGTTA
ACACGTACAAGTAATTAAGGATCGAGAAACCTTGATCAAATCAAACAAGCAAGCATAATT
GCCTGTACTTAGAAATCAAACCAGCCTCACATGTGCATATGCAGCACGGAACTTTAGTAC
TTGTCTACTATCAGGTTCCAGAAGAACAAAATAAGTAGATGAGTAGGTTGGTTCGAGCAA
CTAGATTAGCAGCCGCGGCGCAAAACAGCATACACGTATCACAGCGCCCAATGCCCCGCG
TCATCGGGAGGAACGGCAGAAATACACGGGTATTATGGATTTCAAAAGCACGAGGTCGCA
GATCTGAGATTGGGATGTCAGGGCACAACGATCTCGTAGCGAGTCTAGGAAGGATTCGCG
GGACGAAGGGAGAACGAAAACCCGTGCTCGCGTTTCCTCACCTTGGATCCAGACGGCGGC
GACCGTTTACTCGAGGAGGGGGAACGGCCGCGGCGGCGTCGGCGTCGGGCTAGGGGACAG
AGGCGGCCGCTTCCACCTGAGGCCAGCTACGTCGACCGGGGGCGGAGGCGGAGGCGGCGC
GACGGGGAG