Map Locations of contig_40780 (8302 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_40780

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_56386 1 1437 bp AK248841.1 Available Available None





CDS Structure of MLOC_56386






Contig Sequence (8302 bp)

>contig_40780 8302 assembly3_WGSMorex_rbca.fasta
TCCATGGACAACACCAGACTTGCCATTGCTGCGATTGGCAAGCTCATGTTTGCCCAATTC
TCGGAGCTAGTGAACGACTTCTACAACAATGGTCTGCCTTCCAACCTCTCTGGTGGACGC
AACCCGAGCTTGGACTATGGCTTCAAGGGTGCCGAGATTGCCATGGCATCGTACTGCTCT
GAGCTTCAATTCTTGGGGAACCCTGTGACCAACCATGTCCAGAGCGCGGAGCAACACAAC
CAAGATGTGAACTCTCTCGGTCTCATCTCCTCCAGGAAGACTGCCGAGGCTATTGACATA
TTGAAGCTCATGTCCTCGACATTCTTGGTTGCGTTGTGTCAAGCTATCGACCTCCGTCAC
CTTGAGGAGAATGTCAAGAATGCTGTCAAGAGTTGTGTGAAGACAGTGGCTAGGAAGACA
CTGAGCACCAACAGCAATGGCCATCTGCATAGCGCACGCTTCTGCGAGAAGGACCTTCTT
CTCACAATCGACCGTGAGGCGGTGTTCGCCTACGCAGACGACCCTTGCAGCGCCAACTAC
CCACTCATGCAGAAGATGCGTGCTGTTCTTGTGGAGCACGCCTTGGCCAATGGTGAGGCC
GAGCACGACGTGGAGACGTCAGTGTTTGCCAAGCTTGCCACGTTCGAGCAGGAGCTCCGT
GCAGTGCTGCCAAAGGAGGTGGAGGCCGCCAGGAGCGCCGTGGAGAATGGCACTGCAGCA
CAGCAAAACCGTATCTCCGAATGTCGGTCGTACCCGCTCTACCGGTTCGTGCGCAAGGAG
CTTGGAACGGAGTACTTGACTGGGGAGAAGACGCGGTCTCCTGGGGAAGAGGTGGACAAG
GTGTTCGTTGCCATGAACCAAGGCAAGCACATCGACGCGCTCCTTGAATGCCTGAAGGAG
TGGAATGGTGAGCCCCTGCCTATCTGCTGAACAGAGGATCCAGAAATGGAAGAGTAGCGT
GCTTCAAATTTCAGAAGGCTCCAGTGATGATACTGTTTTTTTGTTGTAATCTCTACAAGT
TGATGTTTGCGACGTTCTTCCAGAGCTTCCAGTGCATTGCTAAAGATTGCAATTGCATGA
CCTGGTAGTGTTGGGTAGCCAGTAGAACTTTTATGATGTAAGTTAAAAGGGTACTGTGTG
ATAAGTTTTCATGATAAATATACTGGTTCCAGAAAGTAAAACTCATGCCATCCAGAGCTG
CCAGTGGTAACTCCCGTACTTGCTAGTTCCATAAAAAATATACGAGGCCTTCTCTGAATG
TTCAATCTTGCATCTAGTAGATGCAGTTTCAGTACTCTGCTTACCAAGTTCAGTGTAGAC
TTTAGTGGAAGCACATACAATGACTAACACTGCATTATTCACCTATCGTACCACAGTATA
CCTGTTCATCCAATCTTCCGATTATTAAAGTGTATAAGATACAAGATGAAATGTCACATG
AATGAAGATCACCACCAAAGCTATCGTCAGTTTACTAGTCGTCTCAGTTCTCAAGATTTC
CATAACCAATGCACATACACATGAAGTTTCTCTGCTCTTCTGAAAAACGCTCTGTTTTTC
AGTTCTAGTCATACCTCTGCATGTGGCGCGTATCTGTATTCTACTCCCTTTGGTATTCTT
TAATGTGCACATATCAGAAGCTCTGCGCGTACACCGATTCTCCACGAGACGTGTATGCAT
GCCCCTCTGAACCGGCCACCATATCATGCCAACTAACGCGTTCGTGTTGGATGAAATGAA
CATGTCAAGCAGCTGTGTCCTCATCTCGAACTCAATAGGAGAAACAGAAAGCAGTCAAGT
AGTCGTCTTCAAACGCGATAGCGTATCCGAGTTCAGAGTAGAGTCGCTAGAGTATACATA
ATTAAATATGCTAGATGCTCTCCCCGCAAATCGCTCAAACAATGAGACCTGACCATTGTG
CTGTTGACCTGTTGTTATTTGATGCTTGTGCTTTCTAGAGAACTGGCTTCAGCCAAGCTT
TGTTATAAGCTCATAGTTCAGAACAGGCTTCCTGTTTTACATAACAGGCTTACAGAAGCA
GCAGCGTCATTGGTTTTGATGCACTTACTGAAGTATTATGTTTTGTCTTCAAGACGCCCC
GATCATTATTACTAGCTCACAGTGAATTACTCCCTCCGTTTCTAAATANNNNNNNTTTAA
GAGATTTCACTAATGGTCTACATACAAAGCAAAATGAATGGATTATATCTAAAATATATT
TATATACATCCATATTAATTTTCTAATGAAACCTTTAAAAAGGCTTATATTTAGAAACGT
AGGGAGTAGAAGACAAGTATACAAGCACCAACAGCACAAGAGAAAGCAGCGGCGTCGTTG
GTTGATTTCCTGAAGCACTTGTTGTAGACCGAAGACCACCCAATTATCAAGCCTGAAAGT
GTCTCTGAAGATGAACAAGTGGTGCCTGCCGATTCAGTTATCGAACGGGTGAGACAAAAG
ATGATGGACGGTCCAGATGCACGTAGAATGATTACCTTTACTCTTATCGAACTAGTTATC
CTTTAAACATTAATTGCTACAGTACCCTACGTTATCATTCTGCTCATTTCTGTCATCCCA
AAACATAAACCCTTGCTTACCTACTACGCGTACACTGTATATGGCTGGATTCTTAAACGA
AATGGATTATAGCAGCCGATTTGGCTGATAAATTTTTCATATATTTAATGCTAGCATCTC
GTATTGCCATAAGTTTCCCCTTCCATCCTTTTGGTCGCTCCCATATTAACACGACTCGGG
CGACTCCAAGCCCTAGCCCGTCACACGCTTTTCTCCCCCTCCCCCTCCACCTCGTCGCCT
CTCGTGATGGCCACCGGCTCGTCGTGTAACCGTCGGTGAAGGGGGCGGCGAGGATCTGTC
CCATTCGTTCCTACTAGTGAGGAAAGGCATGGTTCGGAGGTGGCGCCATCGATGGTGTGG
GGGGCGTCCCTCTAACGATGGGGCGTGCTTGCCGGTGCGGTCGACCGGGCCCCTTGGTTG
CACGGGAATCGAGGCCCCGGTGGTTGAATCTCGCGGCGTTCAACAAGTTTTTTGAATTCA
TAGGTTTCAAATTCAGCGATACTATTTAGAACTAGCACGTGTCTTCCCACACATAGTGCC
CCTTGAGCTTCATTCAACAATGTATGTGTGTGAATGGCCTGCCTTGGGTCCTATGGTACA
TCTCGACAGTACATGAAGTCTATACAACATGTAGAGCAAAAATTGAGTGAAAGAATGAAT
CAAGCAGAATAACATGAGACGAAACTTAAGATCTTCATAGTTGAGTACGGCCAGAGTGTC
TCCACTCATGCAAACACACCACAAAACTTCATGACACAGTTGCAGATGGTATACCATCGA
TGTGACATCCACTTTATGTTGCGTCCATGAATGACGTGCATGTTGTAGAGTGTGAAGTTC
TTTCGTGCATGAAATAAAGCATGCACGCGCGCTCGACTTCCTGCCCAGAAAGCCCGCAGA
TATGGTCAACCACTCATCGCACAACAACTCATCCATGATCATTGAGTATCCCACCATCAT
GCATTACTCTAGAAAACAACAAGAAGTTCAACAAAAAAGTTCAATGACATTTGACCGAAT
ACTTGTCGGGCGTGGTGTGCGCCATGGACGTCGTCGGTAGGGGGGCAAAGGGTACCTGGG
TGGATGGAGGCGTAGCCCATGGAGGTTAGACGCATTAGTGGACGCTGAGGACGTCAATAG
GAGAGGCAAAGCAGCAACGGTCCACGAGGATGCAAAGCAAGGGTGGCATGGGTGGAGTGA
AAGTAAAGTGGACCGAGACAGGGATTTGAGTTGGCCGAGGGTGTTGGAGTCCTAGATGGC
AACGGTACAGACTCCTCCAAAGCCCCCTCCCCTAGTTCTCTTCTAATCTGCGGGAAACTG
ATGTCTCGGTTGGTCCACGGTCAGATGGGGTACCACGTTGAATGCAAAAAATGGATCTAG
ACCACTTGGTTCAGATAGATGCAGGTGATTTGAGAGTCTAATGGGAGATGAACATTGGTG
GGACCATGAAGAAGCTTGGCCTCCAATAAGAGAACGTTAGGGCATCTCCAATGCCAATGC
TCAAACAGGCCGCATACGTCTGGAGCGTAGAAGCCATCCAATGTGGGCATGTATCGGTCT
GCCAAGCCGTGTGAATCTGCTTTTTCAGCAAACTGGATACAAACTAGGGGGCTTAGCACG
TCTTCGGACTGCCGCCACGCCCGCTCTCGACTGCCCTAGCCTCCAAAAAACTCCTCCCTC
GCCCACGTGCTTCCCGCCCAAAACGGTAATTGGCGCTCCTGAGCGTCGGTGGTCGCATTC
ATGCCCAACTAGAGTGGATGCGACCTCTCACTAGCGGTGGCATTAAAGCAGCGCACCGGT
CGAGAGAGCCTCACCCATGCCTCTTCCCCGTGCACGTGCCAGCCCCATATTCAAGCGATA
ACATGACCACCCGTCCATCCCTCTGTCACCCATATTAATTACACACAGTTGCCAAGAAAC
CTACTCCGACGACACTCGTTCGTCCGTCTATTGTTCACCATTGCCATTCGCCCCGTTATA
TGTACTCCAGCTTCGGCCATAGCCAACACTCATCCTCCTTCGGACCATTTCTCCCCTCTG
CACCATTCCCACTATGGTCTCCTCACGCTCCAAAGATCTCTAGGATGGGCTCACACTGGA
GCAGAAGAAGGAGATGGCCGCCATTGCTACTGGTTGGCAGGCCGAGATGCATCCAGAGTC
TGATGACCTCCCAACGGAGAATCCGACCCAAAGTTGCCAGAATGGTGATTCAAGTCTTAG
AATCTTACGATCTTATGATCCAAACTAGCCCCTCCGATTTTACGATTTTGTTCATAGAAT
CTAAGTTTCTACGATCCTGATAGTTACGATTATACGATTCACGATCCTAGCAACGGAGCT
CCGATCCGATTCAGAATCGTAATTCTGATATCTTTGATCCGAACGATGACGGCCTGACGC
CACCCTCCTCGACGGCGCCTTCCTCGTCGGTGCATTGCACCATGAACATCGGCGAGGCCC
ATGCCCATTACATGGACATGGTGAGGGATGAGCGGGAGCATCAGTTCCGGGAGGTTCAGG
CTGACACGGCCTAGAACCTTCATCTCTTCGAGGAGCACTTATAGGCGGAGGAGGAGCTTG
ACGACGGTAGGGCGATCCCATCGGACGCGGACGTGACACATCAGGCGGTGCTGCTCGAGT
CCTACCGCTCTGCCTGTGAGATCCACCTTAATCGCTGGTGGTACCGCCATTGTTAGGCGG
AAATAGGACCCCCTACAAGGAGTTCGACAAAGCGGCAGATGAGGTGTGGGGCAAGAGCGA
CAAGGAGGAGGACATCGTTGGCTCAGCCAAGGCTACTCTCCGCCACGACGACCACGTAGT
CGGCATGTCCGCGGGCGCCGTCGGCAGAGGAAGAGTAGTGCGTGATAGGTTGTCGTCGCT
TAAGTCCCAAGAAGGCCACCGCTCTTCCCCTCTGCCCGAAGCCAAGTTTGGCAGGCTGAT
AATCGTCGGCCGACTAGCCACTCAAGTTGCATGGCGGAGGCTGCGTGGAATGAGATGGAG
CAGGCGAAGGCGAGTGTCGGAGCATCAATTCTCGGGGCTTATGGCAGCCCGGTGGGGAAA
GGGTGACACGACCATTTAGATTAGGAATTATACCTTCAAAGACGGACGAGTTTCGTTTTT
AGTTGAAGTATGTCCAAAATATGATGAATTTTGTCTGTTTATATGAAATCCGTCAAGTTT
GCATGAATCTCTTCAGGTTTGCGCGGATTTCGTTTGATTAGTTCAATTTGTTGTGAAAAT
GTATGCGGATAATGTTGGATGATGGTCTCCGACATTAATATTATTCGTGGACTTGTCCCC
TTGTCGACAAACGAATGCAGGATGAAATTTACGGGTCGGCATGGAAGGCACCCTTACAAA
CTAGTCATGTTATGAAATTTATGGATCGGTATGGGAGGCGCCCTTACAAGCTAGCCATGT
TGCCCGAAATAGAGTAGACGAACAAAATTTTGAAGAACAAGGACCCGGACCCATATTCCA
CATTTCTGACAAGGGAAAACAAATGTACGACTGTCATCGAAATCCTTGCCACTTCCGAGG
AAGAGCATTTCCACTAAAAACGCGAGCTAAATGTTTGCTCGATAATAATCAAAGTCTTGC
ACCACACAATTGCGGAAACAAAAATCCAACCGGAAACAGAAGGAAACATCAAAGTCTTGC
TCTACTAAGACTTCCTTGGCATCTTTAGGCCGGATCCGCTCTAAGTTCAAATAAAACCAC
GTGGTCTGGACAGTTTAAGAGTCTGAGTTAAAGATGCTCTTCTACAACAGCAGCTAGACA
CGTCCTTATAGTTGACAGAATTCTTGAACATATTCCGTAGTCTTCCCGTCACGCAGTTGT
TCGTTCATGGCATACTGATGAATTGGTAAAAATACGTCTATGCTACAATAATGTCTTTCA
ATCTTTGACCGATGTGAGTAAGTCCATGGTCAACAACTTGAACGGCGATGGTTTGGTGGT
GGAGTTGTTGGCGATCATATGTCAAGTCAAATATTAACATCCTCCCAAAACAGGTCAAAA
CGTCAACACAGATCAGGTCGAAATTAGGCATGCTCTCATCTTAGCATGGGCGTTGATGTT
CATCTTAGCTAGCTCTCATCTTTACCTCCTTGATTGGCATGGACACCGGTTATGGCTGTA
GAAAGGTTAAAAAAAAGTACAAAAAATAGGTATAAAATCTAAAGTTTATAACTGAAGATC
ACTGAACATCTAGCTGTAATAATTTTGAGGAATTTTCACGGTTTTTTTTCTGGTAAATGA
TACACACCGGACGACCGACCAAGTGATCGAACTGGTCGCTTGGCCAACTGATTGCACCGG
TGACGCTTAGAGCATCTCTAGCACACCCCGTATAAAGTCGATCCATAAAAATCGTTTACA
ACTCGTGAAAAAAGGATTTTACAGGACGACGCAGGCGCGGACACAGTCAGACCCCGTAAA
ACGGACCCGTAACAAAGATATTCATAAAAGATGTTTTTTTACGGATCGGCAATGTCGGGT
CTGCTCGGACACCGCTGCGCCGACCCGCAAACCGGAAAACCTCCCAATAAGCGAATTTGA
CAGCGATTCCGACAAATGAGTTCGAATTAAACAATAAAACATAGTTCGCGCGCGAAGTGA
AAGCATAGTTTAAAAGACAAACACAAAACGACTTCATGCATCCTGCTCGCTCTTCACTCC
GCACCATCGAGGTCATCGCCGCCCCGGAATACATCGACTCCTCCGAATCAATCGCGAGCA
CTTGTTCCAACTCCGACACCAAAATCATCGGAGATATTGGTTCCGATTCCCGATCAGAAA
ACATCGCCGCCATTGTAACACGCAAGCATCCTCGTCTTCAAGATTTCTCTCCTTGTCATA
TCATGTCATTCTTTGCTGATGTCGTCCATGTCATTGCGGTTCAAAGTCATGATCCTATTC
TCTTCGGCGAGAAGGTTGGCCATGGTTTTGTACTCAGCGGCACATGCTCTTCTCTCCTCA
ACGTCCTTGAGCAATTTCCACCTCTCTTGCTTCTCTCGTGCCTTCTTCTCGGTCAACTCT
ATCTTTGCCTCCAAAGACTTTGCTAGCAACACCTCATCTAATTGCACCATGGCACTACCT
TATCCCGCAAGCTCGATGCTTCGTGTCCCCTTTTGATCTTCTCATTTGTCTTCTTGTCAC
CATCGGACTTGTTCAAGTTTCTTGGGCCATCATCATCTTCATATTCATCCATGTTCATAA
GTGAACCTCTCTTCGGTGGGGATTCTCTGTCAATCAACTTCCACTTGTCGCAGTCTTTGA
CCATTTCCCAACAATGCTCTAGTTTAAATTTTTTGCCTTCGGAAGCTTCCATGTGCTTTG
TACCGGTGTAGGGCAATTTTTTCCTACACAATTAGAACAAAGTCAACTGATGGAACCATT
TTAAATGATGCAAATGGTGTGCACAACTTGGGACGTGAAAACGAACTCACATAGTAGGAT
TCCACGGTTCCACTTGGAGAAACATTGCAAACTTGTTCCAAGCAAGCTGCCCAACGGCTA
CAAGTCGGCTTGATAATGTCCCAACGACCTTTGAATGACCGAAAGGTCCGTCCTATCCTA
TTGGGATAGTTGGTCATGAATTGACAACCTCTATATACTCGTTGGGAGCAAAGTTATTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGACAGGAGACACCTACTTGTTGGTCCT
AGGAGTCCTACTGGTTTGATAA