morexGenes - Barley RNA-seq Database

Contig contig_40742
Source Contig contig_40742
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_40742 (7552 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_40742

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_56341	1	759 bp	MLOC_56341.1	Available	Available	None
MLOC_56342	2	1705 bp	AK251718.1	Available	Available	None
CDS Structure of MLOC_56341

CDS Structure of MLOC_56342

Contig Sequence (7552 bp)

>contig_40742 7552 assembly3_WGSMorex_rbca.fasta
AGGTGGAGTTAGATTGCAGCTCCTATTTATGCATGGGAGGTTTGGACCAGTGACAAAATA
GTTTAAGATTATCACAAATGTCTTTATAGCTCTGCCTAACAACACTAACTGTCAGCATTT
GACCTTGACGATAATCTAATAAACATAAATTGTCAGCAAATATAGGCCACTCTCGATGGC
AAATATAGCACTAACTGTCAGCAAATACAGGCCACTGTCGATACAGAGGCGCACGCACGC
ACCTGCAAGTGCCGATCCTGGACAAGTATCCATACAGAGGCGCACGCCCGCGACGCTGAG
GAAGGAGACGCCTTCGCCGCCGCGCCTCCCACCGCCGACGCCCAATGCATCCACACCCCA
CGGCCGGAGCTGCGGCTCGCCGAGGTTGAAGGTCGCGTAGAGCGCGAGGCAGAGCGCGGC
CTGGACGGCCACCGTGCGGCGCCACGACGGCGGCCTCCGGCCCTGCAGCTCGGCGGCTGA
TTCCACTTCCATGGCGGGCGCCGGCGCCGGCGCGCGTCGCGGCCTCGTCAATGCCGCTTT
GTCTCGCTCGTCCAAGCTGCGGGCGCCCGGGCGGAGACTGCCGTTAAGATCGAGCACCCA
CCCACGTCCTTTTTTTCCGAATGAGAAAATGATTAAATAATCAGTTCATGTTCCTTTTTT
TTCCTCTAGATGAGATCGTTGGTTCTCTCTCTGCATCTCGGATGGTGATCCATGATGGAA
TATCTTTTGTCGGGGCTCACGTCGTGGTCCCACCAGACTAGGCGTGAGGAGGGTGCGCAA
GTGAACAGCTGTCGACTTGTCGAGACATGCCTGCTGGCTTAATCGAGGTTGATGAGCTCC
GTTTCCTGTCTCCTCGCCACCTCTTCACCGTCTCGGCTTTGGCCAAAGGGAAATCCATTC
CGTTTGAACACGGTGTGGTTTTCCTTGCAGCAAAATTGACATTATTATTTTACTTTTTTC
GACATAAAATTGGCATTATTATTTTATTTTATTGCGAGATAAAATTGGCATTATTATGAT
GCTCTTTTTTAGAACTGGAATAGATTTTCTGTAGAGCAGAAAGCAATGAGCAGAGACTTA
AGGCGTACTCTCTGTAAATGTAAAGAGTACTACCTAAACTGTTTTGAGACGGAAGTAATA
GTATTTTTTTTACTACTGTACAATTTACTTCCTCCATTCTTAAATATAAGACCTTTTAAA
AAAAATACGATAGACTACATGCAGTGTAAAATAAATAAATCAACACTTTAAATTATATCT
ATATACATCCATATGTAGTCCCTAATGAAATATCTAGGAAGGAGGGAGTATTATTTACAC
GAATTTAAGATACTATTTGAAATTAAAGAATCTGAAAACACATGGTTTTAAAAGGACAGA
TTTTACAGAAACCACAAACGCTAATTCGCTCAAACTAGGCACTCGATGCTAAACAGCGTA
TCTGCGGGTTCTCAAGAAGATTTTTTTTTCCTTGCCACAGTCCTGCAATCTCAAGAGCGT
GAGTAGAGTTGTGCTCTTTGCATTGCGTGAGTGGAGGAATGCGAGCTACAACCTGACAAG
CAACAGAATACACCACAAACAGTGATAACCTCGCAAGAAAACAACGGAAGTGTACGGGGC
AGGAAAATTTGGTATAGGGTAATCATCAGTACTGACTACTGAGTGCCTAACTTTGAGTTA
CAACAAGGTAAACTAGAACCAGTTTAGTAACTAAACTGAAGGGGGTTTCGATTCAGTTTT
CATCCCTACACATTAACCATCGATTTCCATTTTGTCCTCCGGCTTTACAGTCGAAGGGCC
GACACCATTTGCCGCCACGGCGCCTGCGTCTTGTGGAGGCTTGGCTTCTTCGACGATGGC
ATCTACCACTTCCTCTTTGGGGGTAGCAGCGCCGTTCTCTTGGACTCTCAAGACCCGATC
AACGTCCTCACATACTTTCTCAAACTGATGGAGGCTGTTGGCTAGACTCGCGGAAGCTGC
CTTGTCACCGCAGAACGAATTGAGTGCACGTGCACCGCTGTCTTCAAGCACACCACACAT
CTGCAAGCATAAAGACAATGGTCAGTCAAGGAAACTATAGGCTTCGGAAGGGGAATAGGC
ATGTCAGAGGTCGTTAGCTCATGAACACTTGGTTCATTAGGAACCTTGTTGTAAAGATGG
GAAAGGTGTGCCTGGTCAGTTGAGCCATCAGAAGCCACTTCTTTGGCAGCTGGAAAGAGG
GACACACTTAATGAATAAGCAATGGACATTAACTCACGGAATATACAGTAAAATGAAATG
GCATCTATTCAAGTACCACCACACAATATAGCTGTAACGCAACAATAGACAGGGGAACGT
CCTGAACCAAAAGAGGTAAACAGAGTTGAGTTGCCACAAATCCAGTGGCAAGGCTAAAAA
TTACAAACACTAGCACGAGCACCGAACAGTCAAATACAATTTATAAGTCCACCAAGAGAA
CTATCTATACTGCTAAGATCCCAGGCTAGTCCAAGAACACAAACGTTATAATACATGTGA
TAACTAAAGACAGGCGTATCTGCATAGATAAGAAAATTAAGAGAGCTGCATATCTAAGAA
AATTAAGAGAGAGAAATCACTTACAGATTGGTACAAGAGGGGGAAGTTCTCTCAACACTT
CACTGATATCTGGAACAGCTGGGCTATGTCCCATAGGAACATTTTGTTCAGTAAGATCAT
CAGGAACAGGAGTTTTCGTTTTTATCTGCAAAACCAAAAGATATGAGTTCAATAATTGCT
GCACAACAAAGATTAGTCCCAGTGTATGTTTGCGACAGAGATCATGCACCATACCACAGC
ATATTCAATGTCCAAGCATTTTTCTAGAATATGGTATCTCTTTCTGATAAACTCAACAAT
CTTTCTCTGGATGTCCCTGTATTGGGATAGGCTTGTTGGGTTCACCTGCACTTCCTGTGT
GCTTTCCAGATTTCCCTGATAAAAGCATGCAATTAAATAAATCAAATGGCTCACAGCCTT
CTGAATTTAGTTAGGAAATTGATGTGTGCGCGCACTAACATTTGCCTCATTGTTTGACTG
AGAGCCAATCAATTCATTAGCAGAAGGAAGATTAAGCTCTCGTCGAGCAGTTTCAAATAG
CCCGTTATCTCTGTCATCTGATATGTATTGCCACCTGGCATACCCGTGCCTAATGAAAGA
AAAACCAATATCAGTACCATAGATGCTATATTTGTACACCAGCATGTTTGTGCAAAAAAG
AAACAAAAAGAAGATAAAGAATGCATTTTCCATTAATTAAAACAGAAGCAAAGCAATATT
GATATATTAAAACAAGCCATTCACTTTGAGGGTCGCAAATTCCTATTTTAATTCTTAATC
CAGGAGAAAAATATATACTCGTATAAGAATTGAGAAAGGAGAAAAAATGCTCCAGTTATC
CGGCTAGGGACCAAACCCTCTCTCTCTGGGTAGCATGAAGTTAAGCACGCAAGCCAACTG
CACCAACGACTGATTATGTTCTTCACATGAAAATAATTATACAAGCAAATTGGCCAATTA
GTACAAAAATATACCAATAAATACTCCTCTGTCAAGCAACAAGTGTCTAAAACGTCTTAT
ATTAGTTTACTTGAAACATTTAAAATAAGCATGCAGTCCGACTGGTGACTTGAGACCTCA
GATGGGTTGAGCTAGGTCTCATAACATCGAGGCAAAATCCATAGTTCTTAAAGAATCAAT
CTAGTCGCAAAACTTGCTCAGGTCAATTGGCTAGTTACATGAGGCATATGGAAAACTGAA
CAAGACTTATGGTAACAAACAAGACATATAAAATGGATGCATACTTTATTAATGCTTTCA
GTAACAGTAGATCATGCTCCCCTTTCCATATTCTTCCACCTGATAAGCCAGTAAATTCAT
ACAACAAGTAGTTGGGGAAGAGTTTCAAAATTTTTCCTTGCTCCATGGCAGCCACCTGGG
ACCATAAAAATAGCACAATGTTCAATTGCTATCTATGTTATTGACGAGAGAATCATGTAT
TGAAGTAACATTATAATATAAAATCCACAACGACAAGGCATCACAGAAATCACTCAATTA
CCTGGCTTGCAAACTAACAATCAAGAACAGTGCTATTTCATAAATACTCCCTCCGTCCCA
AAATCATAGTGTCAAAAATGATCTTACATTTTGGGACAGATATATAACGAGGTAAACTAC
TGAAATTTCAGTCCAAATATGCAACATGGTTTATCTGCAAGGCCTGGCATGTTTATCCTA
AAAACATGATTTTGATCTTGCATGTTAAAAATCTGACAAACAAACTATATGCAATTGTAA
GAATTTGAAGTGCAGTAGATGACTTTAAAAGGGGTTTATGGCAGGTGAACCAAAACCCAG
GTAAAAAAAACAGACAACAGCATGACTGGAATATGGTGAGAACCAATTCACCAGGGTAAA
GTAAAGCTGAGCACATAGTGCGTGATATTATGAACGTATACCTTCTCTTCCACAAGTGAT
ATTTTGGCTAGTCTGATCAATGTCTCATCAGCACGCATTTCCTTCGGCACACCATCTACA
TTCATGCATATAGGGTTAAAAATAAGCATAAATGAAAATGAATGAAATTGGTACTAAGCG
GCATATACCTGCATAGGTTGGTGAGTCATTTGTGTCCTCTACAAGATGGACCATGACAAG
CTCAGCATATCTACAAGAACCAATATGGATAGGGTTCACATTACAGAAATAATTAAATGT
GGAAACTAGAAAGAGCAAATAAGAAGAGGGAACAAAACTGGCCCAGAAGGCCAGAATACT
GCTTCTTGAACAAGAACAGCCTAGGTATCCAGAAAATAATTTTTTAACACGGAATACTAC
AGTTAATGATCCTTGTGCCATTTTGCTCACTTTGTGCAATGGCATATGAGGTGTCGCTGA
TTGCAAGTAATCTTATCCAAGGATTTTGTAACATAGCTTGCAGAAGGCAAAACATCACAA
TATTCCATAGGAACATTAGGGCAAACATGTCTATGATCAAATTATTAAAAAAATACTTAT
GCTTTCTAGTACCAACATGATTACAAAAAAAAACATCAATGGCCACAGAACTACAGCACA
GCTTTCTGTGATGCATGAATCCTAATACTAAAATTAAGGAACTATGCATCGTCCACCAAA
ACGGATACTTGAGCTTCAGACACTCATCGAAATTGACATTTCAGGCTTAAAGTTGGTATA
ACCATGGTTGCCAGCCGAAGAGAAATCCAGAATCACGAGACAATATATACCAAGTGGACA
GAAGCCAATTCTTACATTTATCATAATTGTTTAAGATATCTCAGGCAATCCCAATGAACA
AATAAGAAAGAACATTGCTGGTTTAAATAACAGGTAATTAGTCCAACTTGTGCTAGCAAG
AATCCCAATTATATTCTGGCACCTGAACAAATATACTTTGTAATCAATAATACAGAGACA
ACAGTGGGGCATACCTCTGAATTTCCTCGACACTTTTCCCCTTCAAACGAGGAAGATACT
CTTTCCAATCATAGTTCTGAAAACCATACCTGCAAAGTTTAATGGGAAAAATCAATGACC
ATGAAAAAAACATGCCACACATTAATGTTCTTCCACTAGTATTTATTACTGAGATTGGAA
GATAAAACAGTGTTCTCAAGGCACAAATGAGGATACTTAATCTGGACCAAAAATATAGTC
CCTCCGTCCCATAATGTAAGACGGTTTTTGATATTAGTGTAGTGTCAAAGAACGTCTTAC
ATTATGGGATGGAGGGAGTACTTCTTTGGGGAACAAAGATAACTGTTAGAACGTAGAAGC
AGACAACAAACAGAAAGCCATGTCATTCAAACACGTGCACAAAGGACTTAGAACTAATCC
AAGCTTTGACGACATAGCATATTTTTAACATCATTAATATTCCTCAGTAAGTGGGAGGGG
GGAAGGAGGAAGGAGGCTAAAACTTCAAGTTCCATCAGCATGTCACCTAAAGCAATAACA
ATGCTTACGTGTATGCAGTTATATAGGGTAAAGCAGTGAGTACCTTAACCTAAAGATCAG
AGAAAAATTTAGTACATATTTTGAACTAACCTCATGAGTGTCTGTAGGAATTGTGTTCGT
TGAACCTGATTGAATCCGTAAACTTTTAAAGCACGCCCTTCACCCTCCATCAAAGGGAGT
GAATCTACATTACCTGGTGAATATGTATCGGAGGTAAAGAACAATATTTATAAGTAGAAA
CAAATAATAAATGATAACACAGAATATACTGTACATAATTTTATTACGTGAGTTTTTCTT
AGAATACTGAGCCTTCCTCCCAGAAACATTTGCTGGTAAGCTCGTGTCATTATCTGACAC
ATCATCATCGTAGGAGTAATCCTCGTCTTCAGAACTTAACTCATGCAGGCCAGTAATGTC
ATCCTCATCAGCAGCAGCCATCTATGTATGATACAAGAGAAGAAGGGCTCATTAGTCTAT
TTCATTAATTAATATGCATATGCACGATAATACCAATTTATTCAATACGGCATCCATATA
TTTGCACATTTCTCAATAGGAATTACTAGTTTGTGAAGAGCAAGAAATAAGAAAAAATCG
TGGTTCGAGGTCTGAAGCAAAAGACCACCTATCAAACTAGGGAGGAAAAATACAAAAGAT
ATGAGGTTTCAACGAAAATGAACAGGTTGGGGAGAGAGAAAGACAGAGATTGGACTCGGA
GACGCTTACAGACAACCAACATCCTCAAAAGTGCAACTTCCAGCAAATGCATCTCCAGCA
GGCACGCCATCGCTGCTCGTGATCTAAATCCCCTTCCTCATATGCCAAATCTAGCATGTG
TTCCTGGGTTAACCAATGACCAACCACCCCCTTCCTCTCCCGACATTTCCTCTTCCTCTC
TACCAAAATGAGGTTCAGCCATGCCGACAAGTAATGGGGAGGGAGCAGCTGGAAGGAGAG
GGGGGCTGTAGTCAGGCCCGTCTGGTGGCTCTTCCTCCGCTAACGTCCTCCTTTCCACAG
GCCATTGTCGAGGTTTTTACCCCCGCCGTAACCCACCCCTCCAGCAGCCGTGTCAAGTGG
CCCCAGTCACCATCATCTTCCCTTGCCATTAGAGCCGCCGCCTTCAATGTGCGCATCAGG
GCGGCGCTGTGCTGCCGGTACCGCATGTCTTGGCTGTCCAGTAGTGACGGCTGCGGGACG
AGGCAAGGACAGGAGGTCAGAGGGGCAGAAAGTGGAGGACGAGAAGGCACGATGGCCACG
CAGGACCGAGACGGCAGCAGCGGTAGATGAGGATGGGTGGCGGACGCTGCTGCTTGTCAG
AGGGAGGAACCTCGAGAGGGTGATGAGCTGGTGGGAGTGGGCTGAAAGGGGGAGGGGGAG
CAAGGTGCGCTGAGTGAGGTGGGAGGTGGAAGCTGGTCAGGGTGAAAGGAGAAGAGCGAG
ATGAGGACGAGCTGGTCAGGTGGGCATGACCACAAGAAGATGAACAGCGGGACGAGGTGC
GAGCCAGTAGGGGGGGGGGGGGGGGAGGCACCGCTGGAAAAAAAGCGGGCGC