Contig Data
morexGenes
Links



Map Locations of contig_40740 (5278 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_40740

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_56339 4 2113 bp MLOC_56339.3 Available Available LOC_Os04g13170.1, FRAME:-2, EVALUE:6e-179, 13104.m01208 protein OsFBD10 - F-box and FBD domain containing protein, expressed





CDS Structure of MLOC_56339






Contig Sequence (5278 bp)

>contig_40740 5278 assembly3_WGSMorex_rbca.fasta
CACTCCGCCTGTGCACGTGGCTTGACAGTGTACTTCAGCCTCTCAAACCGCTGCTTAAGA
GCGGTCTAGAGGCCAGAGGCACTCCGTTCAGCCATATACTCGTCTTTCAGAGTAGGGAAG
AGATGGTGACGGAGGAAATGCAGAGCCTCGGCATTTTCTAGCGCGAACTTGTGGTCAGTG
GGGGGCAGCTGGGTCCCCTTACCAATCGCTCTTAGAAGGCCCTTGCCCTCGAACCAGATC
TCACAGTGGGAAGACTAGCTCAGGTAGTTCAGCTCTGTCTGGGCCAACTCAGGAAACTCC
CTGTTGACGATTTCGTCCATCTGCAATTTATGCAAAAATAATGAGATTACATCAGGTAAT
CTTTTGCATAAATGTGACGTAGAAAAACTTATTCAATAAAAAAAGAATTTTGCCCGGCCG
AGGCGGGGCGCGGCAGCGGTCCGGCCGAGGCGGGCGGCGCAGCAGGCGCAGAGGCCCCCC
AGCGCAGTCGTGTGCGACGCAGTAGTCGCATCAGGCGACTGCAGGTGTAGGCTCGGGCAG
CCGGCGCGAGCAGCATGCTCGGCCAAAACCAGCCGTCTGTTCCGGCCAGGCACGACGCAC
GTGGGCGGAGCAGCAGGCTCACACCGACGGACGCGGCCGATGCGGCAGAGCAGCTGGCTC
GCAAGCGGCTGGCCGGTCACCAGGGTCCGGGTCAGCACAGCCTTGCCGGTGATGGTTACT
GTAGCAACTCGGGAGGAGAAAAAAACGTGCGTCAGCGGGACGTCATAACGCGGGTACATC
CGGTACATCGCGGCGGGGTCGTGCTCATCTAGAGTACCTCTCATCACCGTCTCCCTAGGT
GTAGTCAACAAATCTCTCGTAATTCATGAACATCGACCTTGGTCGGCGACGTGTTCTTCA
GCCAGTTCATGGGAGAGAAATCCACACCGTAGGTAGATTAAATCCAAAAAAGTAAACTAA
TCGCAAAAACGGAACCGTGACAACGAGGGTAATCCATTTTTGCAAAGAGGGGGGTCGGAT
TTATATCTCGGTGCGATCGACGAGAGCCTGCTTGATGCAGGCTTAACGCAGGCTCGATGG
AGAGTTGGTGGAACGAAGCGTGCTGATAACGTGTTCCGCAACTCCTGCCGACGAGTCCGG
TCCAAGTTTGTGAAGCGAGAGCTGGTGTTGTAGACGAAGTAGTCAAACACACAGAGTCAA
AGAACACCAGAAAGTAGAGAGAGGAACAAAGATTTATTAATCATCAAGTCTCTGTTACAA
TGATGACCTCTCCTTTATTTATATAGGGGTATGGGGTGCAGGGATAAGTACCCATCTAAC
GTGAGTTTAGGAAACGAGAGGGGTTGGCTGCGTGCCTCCCACGCTAGCCAGCCAGCCTCA
ACCGTGCAAGGCCTTCTGTCCGGCCCGGTTTCCCAACACTCTCCACCCTCCTATTAGTCC
ACGGTAAGCGGCCTCACTTGTCACTAGGACTAGCACGAGGCTCGGATGACAGAGATGCTC
ACCTCGAGCACCTGCACAACCAGAGTCGGTTGGTGTCGGTTGCAAAAAATGCTAGACCTA
CGTAATTCTTTTATTAAATCTTACGTAACATTTCTAACTAAACCTCTTGGTCCCTGATTT
TTATGGGTGTGGAGCCCTCCCATCCCTTTAATCCAATCTCAAGTCTTCAAACTTTCAATT
ACGTAAAAACTCAGTTAAAAAAAATTACGTAAAAACTGTATGTTAATTTAAGTTGGTCTA
GCATGGTGTCGGTTGCCCCCCGCGTGCAAGTCCCTGTGGGCGTCCACATCCCACTGACGT
TGTAGTCAAACCCCATCGGCAGCATCCATCGCCGACCCCTGGCCATGGCCACGGAACCGT
CGGCTGGTCAGGCAAGCCAGTGGAAGCCAGATCTAGGCGCCATGGAGCACCCCCGGACTG
GCATGGCTGCACACTCGCACGACCAAGCAGCTCGTGCAACCACACCGCGCTGCCCACCAC
CTCTGCTCCGTGCCGCCACTTCTTCGCCGCACCACCTGCAGACCCGTCGCCATGCCAGAC
CGGCTCGCTGGACCAGATCCAGACCACCAAGTCCTCCGGCCGCCGCTGCACAGTCGCCCG
CCGCCTCCTCGCATCCATCACCACACAACAGCACTCGCCGAGCGAACCGCCGCCGACCGC
GGTCAGATGCACCGCCGGCCCTGCGCCACGCTTCGCCATAAACAGGAATGCTACTGTGGT
ATGGATACGATCATAGGACCTTCAGAAGTTAAGATATACAGGAATTCGGCTACAGATCCC
TACTGGTGTGTAAATCAGTACTCATCAATCAAGACCACATAAGATAGCTGGCTTCTGATG
GTAAATTGACATTCCAGACGAGCACAATCAAGTAATCAACCAAGGCACATCAGATGGAGC
ACGTTCATGGAATCATATGTTAAAAGGAAATAGTAAAACATGAAATAGCCCACGAATATA
TCTCTGTCTGCCAGCAACGAGCAACACAATCAGAAGATATTGCAGGTTTCGACAACCCAA
GCTTAAGAATCAAAACAGTGCCTTGCAGGTAGACACCGCAACGGAGCACAAACCACGTCT
TTTTTTGCTCATATGTAAATTATCACTTATAGGCTTCGTCTGATGATGAACTCAAAAGGG
CCCCTGGTACAGAAATCCAAAACCTCTCTCCAAGTTTCAGTTAACACGAACCTCCTCAGA
CGATGCAGCCCTGAAGAGCAGCACTGCTCGCGAACGGGTCCGTGGTAGAGAAATCAGAGC
CTCTCTCCAAGTTGAGCAACCACTTGTCATCTCCCGTTACGAGTGGGCTCTCGAACAGCA
CCAGCGAACAGTCTCGGCTAGCCCATCTTGCGTCGAACAGAGGTTTCACTTTGGAGTTGG
CCTCGTCCATCGAAGTGAAGCTCCCTTTGCAGAACAATCACCAGCTTCGTCAGCACCCGA
GCGCTCTCCAGGACGAACTTGAGGAAGGAGAGCTCGCCCCGCTCCCCTCGGAAGGCGTAG
AAGACCATCAGCTTAAGGTGTGACTGGATGCATTCGATGGTACCAGCCTCGTGCCAGAAC
TTGTTGTTCAGCTTGCCTGTGGGTTCATCAGTCTCATTGGACTGTAAATTGGTGAAATCG
GTAAATAATTCTTCAGCTCCACAATGATGCATCAGCGAGACGGCAACACATACAGATACA
GATACAGATACAGATACAGATACAGATACAGATACAGATACAGGGGTGATGCTAGATAAG
TGAGGGGGTCTCGCTCTCACCTCGAGATGTAGCCTCTCGACGTTTGGAAAGCATCTGAGG
AAGCTCGGCAGCATCTTAGCATCGTTGCGCACACCAAAGCACACTCTTAAGCTGAGGATC
TTAACGCTCGGGACCGTGGTGCTTGGGCTTGCCTTCGTCCCAGTCTGCAGTGCACCAATT
TTGTGAGAAAAGTTCATCCATTGGCATAGATATCGAACAAATGGAAACCTGTGAGAGCCA
TTTGCACCTTGATGATGGTGTTGCCGATCTCTAGCATGTGTCGTGCCGGCTCCAAGTAGC
CAAGTAAGCTCAGCGCAGGGGCATGGCCAATCCTGACCGTCCTGTGCAAGCCATCGCGGG
CCGATGATGTCCAGATGATGACCCTCTCAAGGTTAGGGGCGTTCTTGACGACGACATTCA
GATCGATGCCTTCTATGATCTGCACGCACCGGAGGCTGCGGCTGACGAGGCTGAGCCACT
TGAGCAAAACGTTGGCTTGGATGCATAGGATCTCCAGCACGGGGCTCCTGGCCAGGACGA
AGTCCATGTCCCGGTTCACAATGGCCATGCCCAAGAGGCCCAGCTCGCGGAGGTGTGGGA
ATGACACTCCACGCGGGAGGTCGGCCGTGTTAGGGAAGGCAAGGGCGCCAAGGTAGAGGC
GGGTGAGGGTCGCCATGCCGAAGAAGGTGGCGGGGAGGGCCATGTCGAGCGGCCACGGGC
GGTTGACGAGCATGAGATCCCGGACGCCCTTGACGGCGAGGAGCTGGAGCCAGCGCGCGA
GCAGGCCGGGGGTCTCCTGCATGTGGCACGAGATGAGGTGGACGAAGCGGAAGGGCCCCG
GGTGCGCGTCGAGGATGCGGGTGATGGCGGACTCGACGCGCATCGCGTGGGCGCGCTCCA
CCCGCAGGCTGGAGCCGCATCCGGCGGGGAGTAGGTCGGCGTCGACGAGGACGAGCGGGG
TGGAGAGCCAGACCCGGCGCCAGCGGCAGGCGAGCGCGGCGGTGCGCGCGCCGTCCTTGG
CGGGGAGGCGGGAGACGATGCTGCGGAGGAGCTCCTCTGGGAGGGCGCTGATGCGGTCGA
CGCCGTCGTCGTCCTCGGGCGGGAGAAAGGCGGCGGAGAGGGCAGCGCGGTTGGAGACGA
AGGGCGGGTTGGGGAGGACGTAGTGGAGGAAGGTCATGGCGGTGGTCACGTCGGCCTCAA
GGGTGACCGGGTCCATGCCGCCCTCCCGGTACATGGCCTGCGTCGCGGCGTCCATGGGGA
AAGCCCGCACACGGGGGTCCAGGGCCGCCGCCGCGAGGCCTCCATGGCGCGGTCCGCGGG
TACACCGGGGTCCATGGGGACACCTGCACCTTCGCTCGTGCCTACCGCCGTCCATGGGGG
CAGCTGGCCACCGGCTGACGAGGGAGGGTGTTGGGATTTGGGTTTTGAAATACGGTGGCG
GAAGAAATTTGTTGGCTTTGGGCGGAGAAGACGGTGGATGTAGATGGCTGGATCCTGGAT
GCGGTTCGCGCAGCGTGCTTCTTTTTGGAGGCTTTTTTTTAGGGGTTTTTGGGAAGTAGT
TTGGGCCTCTTAGTTTGCTTCCAGTAAAACGTGGCTACCGGGCCAGCGCGGTAGGGCCCG
TTAAGCGCACCGAGGATCAGGCATAAGCCCTTTAGATTAAACGTGAAATCACTAGTTAGC
GAATACATCTTCCAACGATTACTTCCACCATCACAGCGTGTGACAAGTGACGCCTTGCAT
GCGTGTCATTTGTCGCAACCGGGGTTTTTCCCTTTTTTCGTACATTCGTATTTCAAAACG
TTTTATCTCCTAAATCGTGCGTTTAAATCTCGAACCATTTTTATCGTTGACTTTCTTGCG
TCGAGATCTTCAAAACTAGGTCCCATGTTGATAGAATTTGACGAACTTTTTTTTCATGAA
AAAAATCAGAAGGAAAAAACCGAACGAAAAAACCGTGCCTCACGCGATAGAAAAAAAAAC
AAAAAACGTGTTTTTTTCCTTTCCGAGAGGCACGGGCCGTGCCTCTCGCGAAGGCAAA