| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_40731
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_56329 |
1 |
448 bp |
AK369641 |
Not available |
Available |
None |
CDS Structure of MLOC_56329
Contig Sequence (9277 bp)
>contig_40731 9277 assembly3_WGSMorex_rbca.fasta
TTGGTGGCTCTACCAAAATTAGGGTTTTTCTCTCCTTATATGTGCCTCCGTGGTGCTCTA
TGACCCTCCGATGGATGGACCCTTGATCCGATGGCTCTCGGGCACCTGTAGAACATTCCT
AGGGGCTCCTCATAGCCGTCATGAGTCTCCAAAGTCGTGGCTTAGCCGAATATATCAGAT
ATGTTAAGAGTTGAACTCAATCACGTCAACAATACTCGTGATCCCGTAATCAGATATTTA
CCTTCAGTGAAATGGGTCTCCAGATCACATACGAACTCTATTTTGGACGAATTTGTAGTC
CGGAATAATTGCCATAAAAGTCCACACACTTTCATAGTTTTAGCTTTTTCCATTTGATAC
CATCTTCGGAGGTCAAACTCATGATTCTAAAAATTGTTTGTGGGCAGATTTCAGGAGAGT
GAGAGTCCTACTCCAACAAGGCTCCTGTTGCATTTTTCGACAATTTTTAATTAATTCCTA
CAAATCAAAGTGCGAAACAAGAACCAAAATGCTCCAGAGGCTCGGAGCTGGCAGAGTGCG
GAGGGGCTATGTTCAGTACGAACCAAAATGCTGACTGGTTCAAGGACACCTTCATCGATA
CTGTGAAGGAGTAGCAGAGCGAGTGCTTTTACATCACTAAGCCCCTCGCTCGCCGGCCAA
GTCGAAGTCCCAACTTTTACGGCTGCCCCCCCAAAAAAGCTTCGGTCCTGGGGGGAGAAA
TGCATCTTTTGGAGGAACACTGAGGATGTGGAGGCACTCATCAATATCAAGTGGTTGTAC
ACCAAGAAGTACCTCGAGCTTCTAGGTGTTGTCAATGTCATGCTTAACCGTCGGATCCTC
TCGCTCCAACTTCGAGCCAAGCCAATGTGGGAGCACAACTCCGGGGATGCAGGGCCTATC
CTCCAGTTCTTCCGCACCACCTTGTCTGCCATGTGGACAGAGCTACTTAAGGTAGCCATA
GACAAGATCCCCAAGGAGGGACGAGATCTCGGCTTCAAGGTCGGCTATGGGGCTCCACCG
GTAAGTGTTCTAACACACATTTGTACTATTTTATCCTTACATGGAGAGATAGTCTTTGAT
AGATTGCGCTATTCTATATGTGTAGAGATGGTGTGCAAGATGTAGGGAATGTAGTGCCTA
GCCCCACTACCAGAGGAAGAGAGATCTCCTCTACTCTTGACACTCCTGGTCGAGGATCCA
CATGTGGCGGTCCCCAAGAAGTTGAAGTCCCAAAGGGCAAGGCGGGTACCAGTAGTCAGA
AGACCTTGGTTACCTGATCTGAGGAGAGCCACACCTCCACCACCCATGAAGATAGGGGGA
GGATGAGGAGTAAGACGTCCCTTCCCCTAGAGGGAAGAGGGTGGTGTCTTAGGACATTGA
AGCTGGAGCGCTGGGCAAAGGCCTTAAGTGGTTGAAGAAAACCATGACCGGGGCCGCTCG
TAGGCCGTCATAGAATGTTGTACTCTTCGACGAGTCTGAAGGGGATAACCTTGCCCCGGG
GAGGAAAAACAGCACCTCGGGGGTACGTTACAGTTCTCCATGTCTTGTATTTCATTAGAC
ATTAGTAGGAGTGGACTCATATAAGTTTCTCGTCCGCGGTCTGGCGAAGGTGCTCCCAAG
TCACTCCGCCAGTGCTCTGCCACCCGCCAGCGGGATTCCGGATTATTCTACCCCTCCGCT
CGCTCATGATGGGCTAGGGGAGGTTACCTCCTCCCCGGCTCCCCATGTCGACCCGATGGG
GGCCGGATGGTCGATCACCATAACCGAGATTGATGCCTCAGTTTCACGGGACCAAGGGGA
CAAAGTCCTCGACATCGTCAAGGAGACACTGGGCCAATAATTGGCCCAGATGAAGTCCGC
CGCAGCTCCAATGCCATGGCCGAAGACCCCTCCACCGAGCTCGCAAGTGCTACGGTCTGA
TGTTTTGCCGACTCCACCTCTCGCCCAAGTGCGGGTTAGTGTGGGGTGGACTCAAGAGAT
GGAGGATACCTTGAAGGGCACCTCCCTTAAGGAATAGCACCATGCTTTGATAGACACGTT
GTTGCAGAGTTTCTGGTTCGTAGGGGGCGGATTGTACGAGGTCTTCGAGGGCCTTAAGCT
TGAATGTACTCTTTTTTACCCTTGTTCAAAGTATTTTCCGTTTTGCGTTTGAATTGCTAA
TCCATGTGTCTATCTGAAGACATGTTTTTATTGCCTTCTAGACAGCCTGCTCAGTGAGTA
TCCCCCGAGCCCGAGGCTGGTTTCACGCAAACATTGTTGGGATCGCATAGAAGTAGGAGC
TTCATGCATAGCCCCTAGGACACTGCCTAACATAATGAGGCGTTCGTCCTGGGTTAATAA
TTTAGCTGTGGGGCCTTATGTGAAAGATGAATCTTTGTTTGGAGGTATATACCCCGGCTC
CAAGATGCATCTCTAAGGTGATAGTGGAGATAAACCGAAAGCTTGAGAGGTTTGAGAAAG
ATCTCGACCTCATGAACCAGCGTTTCGAGCAGTCTCAAGGTAAGTAACCATTAAGTGTTC
ATTGAACAAGAGAAGCATACTACTTTTGTGTTTTAAGTTAGTAATGAATGCCAAAATATT
TTAATGACATCGGCTTTGGCCGAGATTGACGGGATCAAGGCCGAGCTCGAGAAAGCTCGG
TAGGAGGCGGATTGGTAGAAAGCTGCAGCCGCAGAGACGGAGAAGGCCCGAGCTGCCGAG
GCTACTCCGCATGGCGAGGCCCAAGCTCCAGTACCTCTACATCAAATTAAGAAGCTAGTG
AAGCTACTCCGTATGGCGAGGCCCATGCTCCATGACCTTTGCATCAATCTATGGCCTTAC
AAAGCTCTGTCGACCAGCCTCTTTAGCCTCCTGGCCTGAATGCGGGCTGCTGGCCTACAG
GTGGATCACTCGAAGCGATCCACATGATTCGAGGGGCCACGGCGGGCATACACATGCGTA
AACACTCACTTCCAAAAGCTTGAGGCGGCGGTCGTTCCTGCGTGGCCTCCTCTAGGAAAC
AACATGCCGCAGAACAATTCTAAGCAGAGGTGGAAGGGGGCGCCCGGGCTATCGAGGCCC
AGTATCTGAAAGATATGATGTATCAGTTTAGTGCTTCGGATTACCGAAGTAATTCACATG
TAAAAAAGAACATCTTTTGTTTGAATGAGAATGCCATTAGATTTCCTCATATGTCTGTAC
CTTTTTACTGATTTTCCTCTTGTGTGACTGTGTTTAACTCAACGTGGGTGGTCATCGGCT
TCGACCCCAATGCAAAATATGCAAAGGGTTTTCCTCGAGGCATATCTTCTACAAAGGGTG
TTCCTCGAGGCAGATCTGACCCTTAGCCGATGTGTGAGTACTCGAAGGCGGTTCATGCTC
ATAGGAACGAGGCGAACAGAGCATTACGGCTTTAAATTTTCACTTAGTCATAGGAGTTTG
TGTCAAAAGGAGAAGACCGCGATGACATGTTGAGTGGCTCTCATATTTATTATCATTTAT
CTATCAGAGAGTCCATACTACCTTGTCTTCTCCTTTGAGTTATTGCTTGTAAATTCCAGC
TTAGTCCAATGCACATGCACTCTTATTATTACTAGTAGAACGACTGTGCGTTGCCACGGA
CCGGTTGGATCTATCAGGCATGCGTCAACTCCAACTCTTCGATCGTTCTAATACTACTTT
GCCATGTTGTAACTCCACATAATATTATTTCCAATTCTACTAATTTATTGAGATCCATCA
TCCCGAAAACATGTAAATACGAATCGTGTCATGTACCCATCACCCCCATGATTTCTGGTC
AAGCTCCGCCACTGATTGCCACCCAACTCAAATTCACATATGTTTTCTCCAAGTTAGCCA
GATTGACACATGCATTCCCATGACCCCTAACTTTGCAAACCCGTGGTCGTCCTGTAGCCG
CATCCGAATCACAGCAAACCCAACATAACAGGACACACATCTTGTAAGAACAGAGAAATC
TAATGAAGAATCAGAAAATATTTTACCACAAGAAGAAACAAAACATATTGAGCTAACATG
AGATATCAGAGGTCACCACCGAACCAACATCATCCAGGCCAAGATGGAAATCATCATCCT
AGAAATCATCATCCAGCCCAAGATGGAAATCAAGTGTTAATGTTGAATAATCCTAATCAA
GTGTAAATGTTGAATAATCCTATGCAAGTGCTAGTATAATATAATATTTGCTCACAAACC
TTAACAATTCCAAAACACTCATGGCTGTCCAAGAATACAAAAATTTCAAAATTAACAACA
AAAAAAGTGCAGATGAAGTATGATTAAATCTGAATAGAACTTGACAAAATTCAAAATCAG
AACCTTCCTATTGCTGTCAACGAATCCTCTTGTACATCACATTTTCACCCTCAACCTGAA
CATATGCTACGACAGTACATCCATTTCTACTTTGCTATATAATTGAGAGCCATTTGTATG
CCCAAATCTGATCTTAGAATTAGTTTATTTCAGTTTTTTCTCTTATCTATATGTACAACT
AAATTAAGAAGCATTCAGCCATGACATACCGTTTCAGAGAAACACCACAACAATTCTTAG
CTCCCATGAATGATGTCTTTTTTTAGGGATGTTGCAGTTTATTTTCAGGGACGTGCCTGC
ATTTCTATTGTGAAGTTATTTCTTGTAGGGTACACCTCTGTAGCTAACATGTATTCCGAT
AAAACATTATTATCATCTAATACTAACTTCTATAATTTTCTCTAAATCTATCCTGGGAAA
ATGACAATACCGTCTCATTATGAATATCACAACCAAACAATCTTTCCCCAGCTCCATGGG
CGGTGTCACAGGATCCATAGCTTAATGGCTGACGCCGCAAAAACAACAAATCTATGCTTG
CATCACAAGATCCATATAGACCAATACTCGGGTCAAAGAGCACACGGAAGGGGAGCAGAG
AAGGAAACCAAGAGCAAAGAAGGAGCATACACTTGCTTTTTCATATAGTAACTACTAACC
AGTACTGCAACTAATCATAAACGAATAACAGAACTGTAGGGTGTGAGTTGTTGTGTGGTG
CGGTAGTTATTTCTCTCCTTCAACTCATCAATCTTGGCTCTACTTTGAGCATAGTTAGTA
CCTACGCTTCTATACCAATGGATGAAAGGAAAGGATGGAAATATCCTCCCAACTGTGTGC
CAGGCAATGCAGTGGGTCCGGTATTGCCCATTCACTCGCTAAGATTTGAAATGTCCGTTT
ATATTCATTCATTGTCAGCAATGATCATTTCTAATTTCCAAAAAAATAAAAAACATTTGA
AGTCACAAATGATTAACAGGAACCAATGAATACAAATCCAAAAGATATAACAAAAAAAGT
ACGTACCTATATAATATCATATGATCCTGATAAGCACGTCCCATTCACCTCTTCATCACT
TCATGAATACTACATATAAGAGTAAGGCTCCTATAAAATATATTCGTTTCAGATTTATGA
GGCTATTTGATGCACCAATTATATGCAAATATATTAGATAAAAGACGACCAAGTTCCCAA
TTAACGTTTGCACCAATTATATGTAGTTGTCATACGATCTGGCACCAAATTTTGAATTTC
AAAGAAAGTTTGTGAAGATGAACCTCAATAACTCAAGGACCAAAAGATCGGCATGGGTGC
TCCACTCATATGTGTGCTCTGTCAGGTGGTGTGTGCGGCGAAGGTGTAACCCTCAAGCTG
CTGAGGCGGGAGGCAGCAAAGTCTATCTCCGTCCACAGTATCTGCTAAGAAGCATGCCTG
GCTACTCTTCTAGGAAAAAAATGGCACCCTCTTCCAGGAAAGAAATAGATATAAGTGATA
CTGTTTTATGCCAAACAGAACTGTTCATCATAAACATTTCAGTGTAAACATACCATCATG
GAAAGATCTCCTAAATTCTTGCACTGGCTCGTTATTCATTACAGCATCCCATACAGTCCT
ATCACATCACAAGGACATAACCATTTTCTGCAAAGTTGAGAAGATCTGTTATAACCATTT
TCTGCAAAGTAGAGAAGATCTGTTTAGAAATTTGACAGTACCTCAAAACTTGGAGGCACA
ATAACACAATAGTGTTACAAGCAAGCATGCAGTTTCGGAGCATATGAAAATAGGTTAGGC
CTCATTCACCTAAACATTAGGGTCTCTTTGCAGTAGACGGAAGGCATCCAAAACATTCCT
ATGCTCCTTGGTCAGAAGACCTGTTGAGTTGAGAACATATGCAACAGGTTCAACCCAATC
ATCAGATCCTGATGAATTGCTTGATGAAGAATCCTTTGAGTTTGACATCAATGCTATTTG
TTTCTGAGTTTCATCTGAATCCACATCATAATAAGAACCCTCCAACACCCTGAAAACAAA
ACAGTAAATCGGTTAAGTGGAGAGTGAGAGCAGGAACTGCATCTAAATGATCCCTTTTTA
ACATAATGAGTTGTTGGATAAAAGTCTATAACACCTGTATTGAAATGAGTATCTCACATA
TGTTGTCAGAAAACAACAAAACAATAGAAGCAATGATCAAAAGTGGAGAGATTGATCTTT
TTCCTATTTAATTTGAAGGTACAAGAATCATCTAACCCTGATTGAAAGTTGCTGCGCATA
ATACTTGCGGATCCTAACATCCTATAATGTCCCCGATAACACATACACACAGCCACTAAT
TAACATTATAACCAAATCATGGATTCATGGTTGTCTCATTTTGGTGGGGTTTCAATTTCA
ATACACGACTGGAAGTTCTAGCGTATATCCGCGTAAAAAGCAATCAAGTACTACACGATA
CTGGCCATGAGATCCATCCAATCATAGCAAAGAAACCAATGAATACCATAAACAACACGC
CGACAAAACAACATGTTGTGGGAGTCGTTTTTGTCGTTGTGCCCGAGAGGAGCCGACTTT
CTCAGATCATACTACAGAAGTTTGAAGTCTGGAACTGAATCGAATTCATATGAGCAATTT
TAACTCGTCAGGAAAATCGCCAAAACATGGGAAGGGAGCACGAAAACGCCCATACAAATC
CTCCAGTCCAATCTAAGCAAGGGAGCGGACGAGCGGGAGGAAAGGAATCTTACTCCTGGA
TGCTAGAGAAGGCGGCGTGGACTTCGTCCCCGGTGAGCGGGGAACAGAACACAACCCTTT
AGTCGCTATCCACCTCGGAGTCACCGGCGCCCAGAGCCACGGCGACGACCTCCTCCCAGT
CGTCCTCCCCGTCCCGGCGTAGTGTGCGGGACTCCTATCTCGCTGCGGCCAAGGCGGCGG
AGGGTGGGGGCGGCCCGGTGGCTGGCAGGAGCATGCCGCCGCGCAAGAGTAGTCCATCTG
CGTCCACAATACTCCTCGGATGGTCGCGACAGACACACGGACCGAGGGGCGGCACTAGCG
GCGTCGTTGGAGCAGCCGGACGCGCGCGCATCCGAGCAGTAGGGACGGCGGCAGAGTAGG
AGATGGTGGCGGGGGCGTCGGAGCAGGAGATGGGGGCGGGGGCTACGGCGGATGGAACCC
TAGCCCAGGGTTGGGACTCGAAGGAAGAGATGGAGGGCAGGGGGCACAGTCGGGTGGGAT
GCGAGGACGAAAAAAAAATGGTGTCGAAAAAACAGTGACGAAAAAAAATCAGGCAGCGGT
GTATCAAAATTAACCGGTGAGGGTCGGCTACAAACTGCCCCTTTAGGAGTAGAGATTTTT
CACACCGCTCGGTCGTGCAAGTGAAAGGAAATAATGATGACATATGATGAAGTGACGGAG
ATGGAGAAAGGCTGGTATGAACTCGACCTATCTTGTTTTTGTAGATATGATTAGCTCTTC
GTTCTAGATTCAACTCGTTATGGATTGAACATGTTTGCAATGATAATTAGAGATTATAGT
TTCTTATGCGATGCTTAATTAGCTAGGAGTGAATAATCGTTTGTCTTGAGTGCCAACATA
CATATTAAAATGGTTGTGATGTAGTATGATAGAATGGTAGCTTCCTCCAAATGATTCGAG
TGGCTTGACTTGGCACATGTTCATGCATGTTGCTGAATCAAAATCAACATAGCCTCTACG
ATNNNNNTGTTCATAGTGATTTATATCCTACTCTTGCTTGCATTCAATGTTGGTTAATCT
CAAAGCATGTTTGTGACTGTTGACGCTCTCTAGTTGGTCGCTTCCTAGTGTTTTGCTAGC
CTTCACTTGTACTAAGAGGGAATACTGCTTGTGAATCAATTTCCATAAACCCAAAGTTGT
TCCANNNNNNNNNNNNNNNCCTACCTATATGCGGTATTCACCTGTCGTCCGAAGTAAATT
TTCATGTGCCATACTCTAAACCTTCAAATAAATATTCTGTTTTGTATGTCCTAATCGCTC
ATCTAGTGACCAGGGGCTATCCGTATCGTCCATGAAAGGTGGGTTATTCTCATGATATGT
GTTGATTCNNNNNNNNNNNNNAGAAAGTGGTTGGTAATCGGGATGCCCAGTTCCATGTTC
AAAAGTCAAATGAAATTTAATGAAACAAAGCTCCCCCAGGATTGATGTTTGTATGGACGG
TACCCATGGATGCAGCCCGCCATGGAATGTGATTGATTTGTGGACAAGGAGTAAAAACTT
TACTATTTTGTTTGGGAACCGCCNNNNNNNNNNNNNNNNNNNNNNNTATTGAGAACTCTT
AGTTGTTACATTTACAATGAAAGCATAGCACCCAAATTTTTGATTCATCCCTATTCTAAA
GGCTCGAGCTCTGGCACCTGTGCAAATCAATGCTTCCCTTTGTGAAGGGCCTATCTGTTT
TACTTTATTGTTGAGTCATCCTCTTCTTATAAAAGGAACCAGTTAGAGAGCACACCGATC
ATCTATATGGTTTGCTATTAATTGATATTGAGTANNNNNNNNNNNNNNNNNNNNNNACCA
TGAATTACAATGTCTAGTCACTCCTTGTTCTTCGCAGGTGCTCGACATTTATGTTTTAGG
GTCTCAGAAAGGGCTAGCGAGATACCAGTTTATCATACTGTATTATGATTGTTTTGATAA
AATTGCTATCATCTGAGACTTATTATCTTTCTCGCTAGTTGATTATGCCATNNNNNNNNN
NNNNNNTGAGACCTAAATATTATTGTGAATATGGTTAGTCTATAATCTGAGCTGAAAATC
TGAACATAAGTTAGATGTATTTACAACAACAAGATCAAAGCGAGTTTGGAAAAGTTTTTC
CTTATCACTTTCAGTTTATCAACTGAATTTCTTGAGGACAAGCAAAGCTTTAAGCTTGGG
GGAGTTGATACGTCTCTAATGTATCTACTTTTCCAAA
