Map Locations of contig_40699 (9865 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_40699

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_56290 7 3449 bp AK248573.1 Available Available None
MLOC_56291 1 1486 bp MLOC_56291.1 Available Available LOC_Os12g38020.1, FRAME:+2, EVALUE:4e-70, 13112.m03917 protein retrotransposon protein, putative, unclassified





CDS Structure of MLOC_56290






CDS Structure of MLOC_56291






Contig Sequence (9865 bp)

>contig_40699 9865 assembly3_WGSMorex_rbca.fasta
GCTGGCTGGAAGCCCAACCAAACACCTCCTTATATTTAAAAACGGAGGGAGTATTAATAT
GTTTATCAAATGAAATATACTTCCTTTGTTTAGAAATACTTGTCGTAGAAATGAATGTAC
CTAGATGTATTTTAGTTCTAAATATATTTATTTTTATTATTTTTATGGTAACTAATTTCG
GACGGATGAAGTATGTGGTTATTTAAAAAAGAGAGAAAACAAAATCATGTAAGAGCACCT
AGATCAACAAGATAGCCCCCGCTTTCGATAAAGCCCTGCGACGGCACGACCCTGGAGGGC
GTCGACCGCTACCCCCCATCCCTCTCTCTCTCGGATGGCGTCCCTCGCCGCCTTCCACCC
TAACCTCCCCCACGCCCACGGCCACCCCTCCCATCCCAGTCCCACCAGCGGCCTCCTCCG
TCTCCTGCCTTCACGCTGCCGCCATCGTGCCCCTCGCCGGCGGGGGCTAGGCCTCGCCGT
CTCCGCCTGCGCCTCGTCCGCCGCGTCACCCTCTGCCGCCGGGCGAGGCGATCGCTCCGA
AGCAGCCTCTTCGCTGGAGCGTTGCCTCGCGGCGTCCGCCCCCGGCGCTGCGGCACCCGC
GGCTGCGCCTCCCCGCGTACCGCCGGCGATGAAGGGCGGGAAGCAGTACGGTGCGTTCGG
GGCCGTCACGCTCGAGAAGGCCAAGCTTGACCTATCGCAGCGCAAGAAAAAAATCATGCC
CGAGGTAGCCATTCCTGTTATTTCTAGTCGATTAAAACTGCAAAAACAAGTGAATTTATG
AGATATGTTAGGGAATTTCTGAGAGATATGTTGTCCTTGCCCCCTCGTTGTTGAGTAGCA
TGGCACTTGTATATGAATTGAGTAGGAACCCGCTCTGAAATCAGATGGCTGTACAAATGG
ATGGGGATATACCAAAATAACGGATAAGGCATGTTGGTGCGGACAACCTTGTGTTTTTGT
GTTGAGTAGTGGTATATATTATTTGTGATGATTAGTAAGTATGAGTAGTACTCCTTTTCC
ATCCTTTTAACTTAGGATTGGGCTGTACAATTCCTTCATCACCTATACCAAAATCAGGAG
AACACAATAAGTTTGTGCTGTTTGGGATTGAAACAACAAAAACTAACTGATAAATGTTGT
TTGTGCATTCTACTTTAGATGCATGATGTTTAATGTACACACCAATGGTTCAAACATCAA
TACCTAGGGATCCAATGTCTATATGCTATATCACTAATCTCCCTAGGATTGGAGGCCTCA
CAATCAATTGAGGTCTCCAATTGGATTTGGTCACCCAATTTTGACCGGGTTGACAATTTC
TCAACAAGCTCTTTTATTCAATTCTTTTAATTCACAATGCTCCTTAATTTTGGAGCCTTT
TGATTCGATTGAGGTATTCGATTTGGGATTGGGTTCATGATTTTGACTTGGTCAATGATT
TTTAAAATTAATCGGTAGCAACCGACTTATAATAATATATCAGTCCCGTGCACCCCTCGC
CACCTAGAAATATATTATTGTAACACCAAAATAGTACATGCAGACAGTGACACGGAAAGT
TTTCCGATGTAAATATCGGTTAATTAGCACATAACACATAATCACACCACGAAAGACCCA
TCAAAACACCGCATTATAAATAAAATACAAAACATAGGCCATCGCCTCTCACACTAGCCA
AATCAAATTCTCCCTCGGTTCCAAGATATAAGGTGTATTTTTTTCTTGAAAAATCAAATT
TATTTAACTTTGACTAAGTTTGGAGTAAAAAATATGGGCATCCACAATACTAAATAAACA
AAATATGAAAATTTATTTCATGATGAATTTAATGATTGCAACTTGATATTATGAATATTA
ATATAGTTCTCTATAAATTTGGTCAAACTTCAAGAGCTTTGACTTAAAAAGTCTCTAATA
CACCTATATTTAAAAAACAAATAGACTAATTTATTTTATAAAAACACAACAACACCAACG
GCGTAGCAATGCGCGCTTAATCCTTCTAGTTTATCATGAACTATGACTTGTACACAATTT
TTAGTTGGTGTATTGAAATATACGTATTAATTGAACATATGGGACTAGTTTAATTACAAA
GTTCTCCTTGCTTTTACCATCCATCATGTGCTTCTCCGGACATTGCAGCTGGCGACAGGT
GGCGGTGGTGGAGATATTGGGAAGAGAATTGGCCATGGTGGTGGTGATGGTGGGGATGAT
GATGGAGATGATGACGATTACTTTGATGATTTTGATGATGGAGAGGAAGAAGATGGTGGA
CTTTTCAGGAGACGAATTGTTATACAGGAGGTGAAATTTCTGATATTTTCTATTCAGAGA
AACGGCATCCGTATCCTGAAAAAGATTGGGCTTGTGTGTTGATTACTGCTTGTTCTATTG
CAGCTTTTTAATAAAGAGTTTATAGATGCTGTAATGCAAGAGTGGTGCAAAACGATGATT
AGTTTACCTGCTGGTCTCCGTCAGGCTTATGAGATGGTAGATGTTTGTCTTGCTCATTCT
CATTGCATACTTTGGAATGGTTTGAACAGTAGACTAAATGTGATAGATCAATCTAGGGTT
TGGTAAGTTCTGCTCAGATGGTGCGATTCTTGTCAGTGTTTTCAAGACCTACGCACACTA
GGTCTTTTTCACGAGCTCTACCTGGATGGCTATCCCGAGGTCTTGTTGGAAGGTAACACC
CGAATCATTTGCACACTTTCTTCAGGCATTTTGTAAGCTGCTTCCATAGATATTGATATA
TGAACTTGGATGCTAGGCATGTCTTCCTAATGTTGCAGCTTTGTGTCCTTGGTACAACTC
GTGTTTACATTTTGTCCGTACTTATGTTATTTCTCCATTCTATATCTATGAAAATTAAAG
GGCAGCACTAGGTGCCCGTCGACCGGCCAGAGGCCTCGGTCGGTTACCCTGCGCACCGTA
CGATTGGCCCAGATGCAGCCTTAGGATCTGCGCGTCCTCATCCCGTTGGGTCCTGCGCAT
CGTACGATTGGCCCAGACGCAGCCGTTGGATCTGCGCGTCCTCATCCCATTGGGTCAACC
CACACAAGGAAAAAAGCTCCCCTGCCTAGGCGAGGAAAAAGACTCCGTGCGCGTGCGCTT
CCGGCAAGGCAAGACAGCACCGCCACGCGTCGTGCTCGCCGCAGCATCCCCGCGTTGTCG
TCCCCGATGAGCCTAGGCAGCACCGATACGCGTCGCCATTGACTCGCAGCTTTCCCTGTC
GCCGCCAGTTGCCATCGTAGGAAAATAGCTTGCCGGTTGAAGCTTTGCGGTTGCCGGTTG
TAGCATCACATCTGGCAGTTGAAGCGTCGACGTCTTCCGCTCGCAGCTCGTCCCGTCGCA
GGTTCCAGCATCGTTGGCAACGGGTTATAGCATCCTGCGCTCACAATTGCAGCTATCCTG
AGCGACGGTTCCCAGCTCGCAGCGATCGAGGTTGCATTGGTTGAAGCTTTTTCCGTCACC
GGTTGTAGCTTTCTCTGCCGCCGGTTGCAGCTTTTTTGCGGTTCTGAAGTCGTGGGCCAG
CATTTTCTCTTGCTGGTTGTAGTTTTCTAAGCCACTGATCATAGCATTCGGCGCTGCTAG
CTGCAGCTTCTCTGGGCGCCGGCCGCAGCCGCCCCCCTGCTCTCTGGTTCCAGTAAAAAA
AGGGCACTGATCGTAGCATATGGTGCTGCTGCTTGCAGCCCTCGCTTTCCCTGGTTTCAG
CAAAAAAGGGGTGTCGGCCGTAGCTTGGTTCTGCTCCGCCTTGTGCCAGTCGCAGCTGCA
CCGTAGCCGATTGCAGCACGTCGGTGCTGCGCAGCTTCGCCGGGCCACGGCTGCAGCTAC
GATGCACATGCACGCCGGGGAGCATGGGAATTAATGGAGGGAGGATCCTGCAACGCCGTG
GCGCGTGGGAAGGTGCTCGCGTTGGCTGGGGCTCTCGACAGCAGCGAGCCACCGAGCGCG
GTGGTGAGGAGGGGCAGTTGATGTGTGGAGAGAGGGAGAGGGAGGGAGAGAGACATGAGG
CTTCGCCGGTCATCTCTCTCTCTCTCAGAGGCGACCGGCGCGAGGCTTAATATGATGTGT
GGCTTGGTTTCGAACCTTGAAATTCATTATTACATTAGTGCTACTATCACCAGTTTTAGT
TATTATGTTTTCTCTGTATGCAGAACACTTGCAGATCCTTCATTCCCACATAAGATGGCT
TTTGAGTTTTTGGCTACTTTTGCCTCATCTGTTTGGTGGGAGATGAATATTCGTAAGGAG
AGGTATGTTGTACCTTATCTGATGCTTAATAGGTCAATATTTACTACTTCATCTAAACCA
TGTTACACCTTCAAGTAATCAGGTTTGAGAAAGAATGGGATTTGGCTGTTGTCAATGCTT
TGACTGCATCATGTTGCAACCTTGTGGTTCTGGGGCTTCTGGCACCATGCCGTTCATATG
GGAGCACATCCCGATTTGACTTCCAAAATGCCATTGAGAAACTTCCTAACAACATATTTG
AGAAGAGTTATCCTCTGAGAGAGTTTGATCTACAGAAACGAATGAGTGCATTTCTTTACA
AGGCTGCTGAGCTTAGCCTGGTTGGGGTCGTTGCTGGATCTATTCAGGGTGGTCTGTCGA
AAGCCCTATCCGCAAGGAAGGGTAGCAGGTTGGCTTGGTCATTAACAGTTTCTTTGTCAA
TAAAAGCTTTCTTCTGGTGGTTCTCTAATCCATTTGTGGAAAACTTCTGTCAATCCCTTG
GTAGGTTATCGGTGACCCTTCCTAATGTCAGCACCAATGCTCTTGGTTATGGAGCTTTTC
TAGGACTATATGCAAACTTGCGATATCAATTGTTGTGTGGACTAGATCAATATACGATCA
AGCGCTTTGATGTTCTTGGCATGGCAATCTTCATTGGTACAACACTAAGGTAAATCTCCA
CTGACCTATTGTCTTAGTGCATTAGTTTTACATGGAATATGTTACAGGCGAATGACTTCC
TGTTGTTCCATATGTATAACAGCAGTGTCAGTTATACTCTCTGTTTCACTATAGCATGCA
TACTAGGAAGCACAAAATTTTAGTACCATGTGACGGGACTGCACGTTACTTCAATTTTTT
GCTTACTGGATATGTACACTGCCCATATATTATTAAACAGAGTTGTTAGCTGACTGCCCT
GGTTACTATTGACAATACATGCCATACTAGTATCTTACTCTTATAATTTTTATGTTGTTG
AGACATGGTGAGAGTATGAGGTAAATCCCATGTTGTTTTTCTTTTCCTTTCCCCCTCTTT
AGATTGACGCTTGGCTTCCATTGTTTGATCTCACTGTTGATGCTGGATACTAGTTTACTA
GTTTACTTGTTGACTAATAAGCTATATTTGCAGATCTGCTTCCAACTCCCGCCCATTATC
TATGTTTGCTTGATGAGTCAGATATAAACAGAGATTTTATTGATATTCTTTTAACATTCT
TACCTTGGAATGTGAAAGTAGAGAGATACCAAGCATTTGGTACTGGATCTAAACAACTAG
TCAAACATATAGATCGATCAGCTTATGTCTAAATACCCGTTTTCCTAGTTTGACTAAGCT
GCTCCTAGACGTTTTGTATGGTTGTGGAGGGGAAGAAAGGGCAGCGCTGGGCCCTAGGAG
GGAAGATGCGAACAGGAAAAATGAGCTGCGTGGAGGTTTGATGTCCTGTGAGATCATGGT
GGCGCTGAGCTCCGGGAAGTCCCAGCGGCAAGTTGGGAGCGTGAAGTCCTGTCCCTCTGA
TTCGGCCTATTGACAACAAAGCCCAATAAGGCCCACTAAGAAACCCAAGTACCATCTCTG
TGCCCCTCTCTCTCTCTCTCTGGGTCACTCTTTCCTTTGTCCTCTGTTTCATGCAGCAAC
AGCGGCGGCGCATGCTGCTCCTTCCCTGCCAGAGGGCCTCACTGGACGCACTATTGCCAA
TGGCCAAAGCGGGGCTAGCCTCTCCCAGCGTCTAAGTGAGCGCCTTTATGCTGCCTAATT
TTTCCATACACAGTCAATATGTCATTCGTAGATAAGATAAAAACCAAATAATTTGTATTG
TCAATGCATTACATAACGTGGGTTTCCCAGAGTTATAATGCAAAGCCACTGGCTGTTTCC
TGCCACTAACATTCAAGAAAAGGGAAGCACTGGCCTGTTTGTTTATTTGAACTGGCGTGT
TACTGTTTTTCGGCCAGGTACCTGGAAAACTCTCAACCTATACTTATCAGTTACCACATT
CCAAAAAAGTATCTAATCCATAAATATGAATTCATACATCCTTAGCTTGCTTTGCTATAC
AGTAACTGCTGGATTTGACCTTGCTATCCTTGATCTAGTGTGCCTAATTGTCTAGGTTTT
GGGTTCATTTCAGTTAAGTTTCATGCAACAACCAGTAGAACCAAAATCTGAACTGACAAA
CCAACTGTTTCGTGAAACTTAATATGGTATCAGGGCCAAGAGGTTGTGGGTTCAAGTCTC
AGCGTTGGCCATCTAAATAAGAAAATTATTTTCCCCTCCTTCTGTCCATGGTTAGGCCAA
TCTTCTCACATCAATTGGGACTATCGGTTCTACTGGGTGGTGCATGAAAATTGATAATTC
CAATGGTCCTTCAACATCTAGACATCGTTAAGCATGGAACAATCCTGTTAGGAAAAAGGT
GGCCGCTAGGCGCTAGTCGGATGTACCGATTAAAACATCAGCCTCCTTTCCCACCGTTCG
ACCAGTCTTGATCTAAACGTTCCTACCCGCTGATAGTTAAAGCGAACGAACGCTTCGCAA
TGAAACACGTGAAGCACGCAACATGTTTGCTTCTTTTTCCCCGTGGCACCGGAGGTGCTC
CAGCAGCATCGGTGTCATGTCAGCACCAGACACAACATCGCCATTGCCTGGGCGAACCAC
GCCGACGAGACCTTGCAGCACCGCCGCTGACTGAATCACATGATCTTCGCTACAGTTCCC
TCCGTCGCCTTGTCACGGCAACCTGCTCCCGGTCATAGCCCGCATGCTGCTATCACTACA
AGCACTACACGGCCTCACATCAAACCCATGTTGGAGCAGTCTTGCTGGTGTCGCACTATC
GCCTCGCCTTCAAAGCAACAGGACCGCTGCTGCCGAAGCACGCAACATGCCTCGCAGCAT
ATCTGCGGCCGTCGAGAGTCACAACATCGGTCGCAGCATCTCCGCGCGGTTGTACAAAGC
ACACCGTCAACTTGGTCTTCGAGTGCTGCAACATCACCGCGGCCGTACGAAGTAAGCCGT
CGGCTCGGCCATCAAGCGTCGCAACATCGCCACGACGGTGGAACGTCGCAACATCATTCG
CAGCACCGTCATGTCGTGGAAGCACACGTCGTGGTCGTGGAGCGTCGCAGCACCCCGTCG
TCTCGTGGAAGCACACGTCGCCACGGGCGTCGAACATCGCTGCACCGTCGTCTTGTAGAA
GCATGTCATCTCCGCTGCGCCGTCAAGCATTGCAGCACCATCGTTGAAAGCACGCCGTCC
CTGCGGTTGTCCGCGTCGCATCACTGTTGTGTCGTGAAAGCAACCGAGCCGACATTGCAG
CTCCAGCGGCCTTGCAGCACCATTGTGTCGTTGAAGCACGTCGTCGCCGAGGCCGTCATG
CATCGCAACATGGAAGCAATCGGGCTGTCGTCGCAGCTCCAGCGCCTCGTAGCAGCCATT
GCAGCCCTCACTAGCAATAGTATCGTCAGCCGGCGCTGCTTGCAGCAACGCTGCCTCCCG
CCGCAGCAGCCATTGGGGACTGACCTGGAAATGAAGATGGCAGGGGAGTCACGGGAGCAA
CACACATGTGGTCGTGCTGCTAAGGAGTAGGATGAAAATATTGAGAGATGAAATGGAGAT
GGGAATCCAGGAAGAAGACGGGCTGGGTGAGAAGATAAGGTTGAAAACCAATAGTTATTC
GTGGTTGCTGGGTTCGTTGTTTACAGTCGGCTGTAAGGAATCAGTTTCCTGGGAAAAACC
AAAAAAGTCAGCTTTACGGAGTTTCCTGGTAGCTATCATCTGAGATTTGAAAACTCAGAT
TTGAAACTTGTTTGACAGAAATAAAAATAAAATAAAGTACGTGTGTTGCTAGCGACATTG
TGGCTGGTCCCGGCTCACCCTCGCTGGCGATGCTATGCAACGTCCCTGTCAATCCTGCGC
GCGCCCACGAGGAGAGGGCGGGAAGCGATCCGTCCCTCCCCGCCAATATCGCTGCGCCCG
TAACGACCCCACCGGCCATCGCTGTTGCCGCGGGGCCCGCGGCTGCTGATGTTGCCGTTT
CTGCACCCGCACCTGTGGACGGCGCCATGGCTGGGCCCGCTGCCAAAGATGCAGCTGCTG
CTGCAACTGGGGCCGTGGCCGGGAACGTAGTGGCTCGTGGGGCCGCACCCGAAGACGCGC
CCGCGCTCGACGGCACGCCCGCTGCCCGCTGACGGGGATGACGGGCCTGCGCCGACCATG
GATTAGCCGCCCCAGCCCGGACTGGAGGCAGGTCTGTCTCACTGCCGTGGCCACATCTCG
ATCCTGCAGAGACCCACGCGCCGACAGGATTCAGAACCTTGCGCCGCTAGCCCCCGACCG
CTGGTCCCAGGGCGTTTTGCCTCGCCGCCGATCACCCTGCAGCGACGACGAAACTGCAAC
ACCGCCGGGCAGACATGGACGCTGGGCGCCTTCCTATCCGCGGCTACCAAGCAGCTCGAC
GCAGTCCTGCCCTCTCCCCCCGCCCCTCAACTTCAGTCCCAGGAGGGGACGCTCTGCTGC
CGCCGACGCTCCGGCCACTACTCCTCGCACATCGGATCGACGGACAGTTGTTCAGATACT
CCGCACTCTCGGGATCGTGGGCACGAACCAGTAGATTACCTCCGTTGAGATGAAGGCATA
TGATGACATGTTCGCCACGGCGCTTAGGCTCCCAGTGCTGTAGGCCATCGCTGCTCTGGT
TGACCGGACGGTCCCTGCAGGCCTGGACCTCCCGGCGGGCGATGCCATGGTCTGTGCGCG
CTAGCCCGGTGGTGACCGTAGTCGATCTCACACCCATGTATCCAGGTCCTCAGATAGCTG
TTTGGAATGTCAGGGGCTTGAACTCGCGCGCTAGGCGCTGCGCGATTCGCTCGCTGCTCT
GTACTACCCGTGCATCCATTGTATGCCTTCAGGAAACGAAAATGGCGTTGATTTGCTCGT
CGATTGTGTTGGACACCCTTGGGTCCGAGTTTGATGGCTCCACCTACCTCCCGGCTGACG
GCACCGGCGGTGGCATTCTCATCGCTTGGAAGAGTAGGGCTGTCACCATCTCAGACTCCC
TATTCACTCAAAACGCGATCATGGTGAATGTGTGCATGCCCAGCGGCGCCCCGTGGTGGC
TAACCACGGTGTATGGCCCCTAAAGCGACCCCGAAAAGCTGCTGTTCTTGCAAGAGTTGC
GGGAAATTCGTGCTGCTTGCTCGGGTCCTTGGATGCTCTGCGGTGACTTCAACCTCATCT
ACCGCGATGCTGGCAAGAGTTCCGGCACCCTGAATCGTCGCATGATGGGAAGGTTCCGGC
GCGCCATCAATGATCTTGCCCTGAAGGAGGTATACCTCAACGGGCGCCGCTTCACATGGT
CTAATGAGCAGTCGCCGCCGACGCTTGTGCACCTCGATCGGGTTCTATGCACAGAGGAGT
GGGAGGACTACCACGGGGAATGTCACCTCCGCTGCCTTGCATCCGTCGTGTCTGACCACT
GCCCGCTGCTGTTGGACTGCTCCCCAATGCTCGTGGCCCACATGCGCTTCCGTTTCGAGG
ATTTCTGGCTTCGCCTCGACGGATTCCACGACACCGTCGCTACGGCCTGGAGCTCGGTAC
ATGACCCTGACCCCTTCCAGCGGCT