Contig Data
morexGenes
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Map Locations of contig_40694 (9057 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_40694

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_56286 4 3563 bp MLOC_56286.2 Available Available LOC_Os05g10940.1, FRAME:-1, EVALUE:1e-145, 13105.m01183 protein metal cation transporter, putative, expressed





CDS Structure of MLOC_56286






Contig Sequence (9057 bp)

>contig_40694 9057 assembly3_WGSMorex_rbca.fasta
GGACCTACAGGGCAGTCCTATGACCCTACNCTAGGACTATAACCCCATCAATACACCTCT
CCCCAAAGCAACAGTGCTTGTAGTGATTTAGCAAGAGTATAGACATATATACATAATGTA
TATATAATGCTCAGGCATTTCCACTGGCAATGTTCTCTCTCATGCCCATCAAAAACAAGG
GCACGTTATCTGATGTATGTATGCAATCAGATGGACACAGGCACATGCATTAGTTATGTA
CATGTATCAGAGGCAGTATGTTGAGACGTAGAGATCGTCCGCTACCTCCATCTCATTAAA
CCAGTTCAGGCCCAGACTGCAAGCGATGACATGGAGAGTGCACCTAGGAACAGCGCAACA
TATGCCATCACTTGTTGTCGTGCCGACCCTGTCATCTTCCCACCCAAGAAATCGGCTGCG
ATGAGATCCACCAGCGCCATGTATATGAGTATGCCGGCCGACACAGAGTCGAGGATGCCT
TCCACCACTAGAGCCCTGGGGCTATTTGCGTCGTAAAATGAGGACAAACCAGCCCCAGCA
GCGATACCAGTTGGTGTTGTAATGGCAAAAAAGGAGGCCATCATGACTGCCGAAAGGTTC
TTAAACTGAGCCTGTTGGAAGAAATGTTGGCAGTGTGTGAAATTTGATAATCCAGATGAG
AAAAGGTTTATCACAATAAAGCTGCCTTGGAAAATCAATGGGGCAAAGGGCAAAAAAAAA
ATATTCAAAAGATAAGTAACCAACATAATAACAATGAACAATTGTGTATGCTTATACGCT
ACATTACCAACTTAAACAGAAATGGCAATACAACCTCAGCCAATAAGATGTTGTATGATA
GTTTAATTTTAGTGAGGTCAACCGTTCGAAATCAATAGCATTTTAGATTGGTTCAACAGC
TATTAAAAAGATCAACAAGTACACGAGAAAACAATACTCCGTATTTTGGAAACAGCAGGG
AGCAATGTGGATGGGACATACAAGGCCAGACGTTGCACATACTGGTATAAGAGCAAGTTA
TTCGGAAGATCAGGACATAACCAGTGGAGCACATGAAAGAAACACACTTTTGCCAAATAT
TGCATTGGGCATCGAGTATAAATTGTATTTTCTCATGAAGAAGAAATAAATTCAAAATAG
TTCAGTTGCAGACAGTTGCTCCTAGAGAGTGATAACCACCTAATCCTGGACCTAAAGTTT
TAAAAGGATACTCATACCAATATGTTTTAGTTGTATCGCCTAGTTTTCTGGAAAAGTTTT
TGGTTACGTGTCTCACCACAGATAGATACTGGCGATAAGCAAGAAAGCTATATGCTTCAA
AGAAACTCGGTGTACTAGAAGCCAATTCATACACAATAAAAGAATATTACTAATTTGAGA
AAGGCAAGATACACAGAAGTTTATGTCCATACTATAAAAGTCTATGTTGATGGCATGTAA
CTGAATGCCTAATAGTTTCAATTTTCAAATGAAACCAGCTGGTCAAAGAGTAATTTTGTG
GACAGAAATCTGATTGTAGCAGTAGGGTTTAACACTTTGACAAGTTGGTGATAGAATATC
CGCCGATAACAGCCTCAAATTTAAAATAGGTAGACCTTGTATCTGTGAAGGTCAACCCTC
CTCCATTCAATTAACAAAGGTGCAATCCCTGACCACAAAAACTAGAACTAAATGCAAGTT
CGACTAGTAAAATTTCTGGATTTAATTCAGTTTAACATAATCAGGTGGTCGATTCACAGC
TCGTGTTATAAGGATGGCAGCTGACCCCAGATTAGCGCTCCCTTCATAGTGAGTATTATC
TATATTTCTGTATTTTCTTACGAACTGATACTTCTGAAGTTCTAAATCTTCACATTTCCT
TTTGTGAATGAATATCCTGATATTTCTGACTTTCCGATTTCTGAGCATGAGGTTTGTAAG
TTGTCATCCTTTTCTGTTGCATGTGCTCCTAGAATTCACCAGTTTAGTATAGTTACTTTA
TCCCTAAATCAAGGCCACCAGAATACTGAATCACTGTGAAAAATGAAAGTCCACATTAAC
GGATTAACCTATTGTAAAAACAGACGCTACAAAGTGCAAACGGTAGTAGTTGTGGTCATT
TGAACTATTTCATTTTCCTTGTAGCCATCACACAGTCATGCCACATAATTGTACCAATCC
ATACTGAATTCCTCACCTGCGCGATGCACCCACCAAGGGCAAACCCCTCGAAGAACTGGT
GAAATGAGAGCGCTGCCACCAATGGCCTGATTGCGCAGGGGCTCCGAGACACCCCAAGCG
ACAGCCCAATGATCACGGAGTGCGACACAATCCCCATTTCCAGTATCTACAGGAATCAAA
ATCAATATATACTTTTTTGAGGGGAACTATATCAAACAATTGATTGAAACCAACGAAGAG
ATTACACCACCTGTGATACCACGACGGAGCGCACGTGCTCTGACACCTCCCCCTCGCGTC
CTTGTGGTTGCACCAGCTCGTGACCATGCGATTGCGCGTGGGAATGGGAGTGCGCTTGCA
AGAGCGGGGCCTTGTGCTCACTCTGGACGACGGTGACCACAGTGATGTCTTCGTCGCTGG
CGGAGGTGGACGCGGCGGCGAGTGCGGCAGCGGCGTCAGCCTTGACCCGAGCTACCTCGG
CGCGGTGCTTGGTCTCGTAGAACCTGGTTACCAGGACGTCGAGCACCAGCGTGGCGAGAG
CAGCGAGCATGGCGACGAAGCCGGGGAACGGGAACCGGCGCCAGGGCGCAGCCGGGAGGC
AGGGGTTGGAGAGCGCGTGCTCGGCGTCGTGCAGCATGTGGACGAACCCTGTGGCCAGGA
TCACGCCGGCCGCGAAAGCCTTGGCGGCCACGAAGACGGCGCTGCCGGTCTCCACCGTCC
GCCGCTTCCGCCCGGCAAGCGGTAGGCCCACGCCCATCACCCCGGACACCAGTATCGCCG
CCATGGCAATCCACTTGAGCCGCAGCGCCGCCGCGTCGTCCCGGCACCCCGCCCCCTCGG
CCTTCTCCACCTCGTCCGCGCAGCTTGCCGCGGACAGGGACGCCGCAATAAACCCTAACC
CACCATTGACATCGATCGGATCAACCACAAAAGTGCTTGAAAGAAACCTCGAAGAGCAAA
CTGAATTACCGTTGCTTTTACTCAAGAGCTGGCCCGCGTGCCGGCGGAAGCCTGCTACAC
CGATCATCATGCCCTGAGAATCCCGAGCGGTGCTAAATTCCTCGAGGACAGAAACCTCGG
AAAAAGATCGATCCCTTAACCTCTTGGCCTGGCCTTTCTTTCTTCTGATGCGGTGGATGC
CTTGCTATCTTCGCACGTAAAAGAGCGCGCAGGGTACGAGTGAGAGAGAAAGAGGGGGAG
GGTGTGTCGTCATGGTGGCACTGCACCGAACAGCCGGGGTACTAGAGCGGACGTGATCCG
TCAACGCAAACGATCCAGAATGCGGACGGTGGCGATTTCACCTGGGCTAGAAGGTCGCGT
TTCGCTGGGCTGCGGACCAGGAGGCTCTGCCGGTGGGGTCCGGGCCCACGGTGGGGGAAA
AGCGCGAGGGCGAAGTGAGTACGTGGACTGGATGCACGAATCCCTGCTGTGCTAGACGTC
GATTCGTGTTTTGGACGGCTGAGATCCTGCTCCGCGAGCGTGGAGTTAGTATACCACGTT
CTCCTTCTGTTCGGCAGTTATAATACTTCGGCAGGGATAGGCAGCTGCTTGGCACACGCG
ATCGTGATCAAGTCGAGAGACTTGAATACGGGACATACTCCCAGTTTGGGCCCCTTTGTC
AGTCTGAATGATTAGCATGACGGAGGTTGGAGCTGGTCGTGGGTTGGTGCATTGCGACAG
AGTCGTGGGGCAGTGGGAAACGATGTCGACATAGTGAGGTTAGGCGGTTCCAGGATCCAT
CCATGTCAGCGTTCGTGTATGGGCTGGGCTCATCGGCCTTCATAACAATGGCTGTTTGGT
TGCCGGGTCCTAGCATACGAGTTATTTTGCCGATACAAAGGCCAGACCGGACGTACGCTC
GTCGCGTGCACAGGCGATCCACCGACTGGCCTATTCCTCCTCGAGGAAATCACTAATTAA
AGCAAAAGGTGAACCATATATAATAGAAAAATAAGACACACTTCTAATCTATTAAGTATT
GTACATGTTAATTATAAAATAAATTATAGATGACATAACAATGTCCACCACGTGTCTATG
CTATTAATCATGCTATGAGGGAGTATTTCTTTTAAAGATCACTCCCATTTTTTCAAGTTG
TGATAAATGACACACTGCATGTGTGTTACTTGTGGTAACCTGAAACTTTTTTTTCCTATT
TTTATAGATTTGTATTTTTAAAATATTTTATCTCCTAAACAGTACATTCAAATCTTAAAC
CGTTTTTACCGTTGGATTTCTCGCGTCGAGATCTTTAAAAATTAGATCCCATGTTGATAG
GTTTTCATAAACTTTTTTTAAAAAAAAGACCAAAAAACCATGACTCTCGCGATAAGATAA
AAAACTAGAAAACACGTTTTTTGCGTTTTTTTTCTTTCCAGGAGGCACGGCCGTGCCTCC
GCCGTGCCTCCCACGTGCCTCCCACGAACCTCCCACGAAGGCAAAACCGTGCCTCTCACA
GAAAAAAATCGTGTCTCTCATGAAAAAAAACGTTACTTTTTCCTCTCCGAGAGACACGGG
CGTGCCTCTCCCGATGGCAAACCTGTGCCTCTCACGAAAAAACATGTTATTTTTTCTCTT
TTTCGAAAGGAACGACCGTTCCTCTTGTCGAAGCAAAATCGTATCTCTCGCAAAGATAAA
ATCGTGCCTTTCACAGAAACAAAATAGTGACTCTCGCAAAAAAAAAAGACAGGTTTTTTG
CGAAAACATGTATTAAATATTTCGTCAGAAAACTAACACCAAAATTTCAAAAAAAAAACA
ATCTAAAAAACCAAAAACGCGTGCGAAAAATAAAAAAATAAAATTCAAAGGAAACCCTTA
GAATGCGACACATGGCGATACTTGAGAACGCACCAAGTACCAACACGTAAAGTGCTCGTT
GCAAGGCTCCCGAAAGGACGCTTGCTAACTAGGGACTCCCCTATTTGACGCCCGTCATGT
CAAAGTGTCGGACGTTCGTACATGCAATCCCCAAGTGTGAGAATTGGGCCAGCCTCTTAC
TTCCTCATGAGGCAGCCAGTTTCAGGAACCTTTTCGTGAACCGGTTCACATTAGTCAGTC
CAGTTTTGCGATGATAGAATCGGTTCGCACTGGCCAGTCTACAAGGTTTCCTAAACCGGT
TTTTTGTTTTTAATGATTTTTATGTTTCTTTTTGTCTTTTTTTTTGCTTCTGTTTATTTT
TTTCCTTTTCTTTATTTCCTATTTTCTTCCTTTTTCCTTTTTCTATTTTAAGGTTATTTT
AGCTTTTTCAAACTAAGTTCATGTTCAAAAATTGTTTTCAAAATTAAAAAAGTTCTTGTT
CTATAAAAATGTTTGTTTCAACAAATTGTTTATAACTGCAAAAAATGCTTTTATTTTTCA
AAAAATGTTATTGTTTTCATTTTCATTTTTTCCTTTCCTTCGTTTTCTTATTCTCGTTTT
CTATTTCTTTTGTTTGACATTTGCAAATTTTTGTTTTGAATTTAGAAAAATGTTCTTCTG
TTCAAATTTTTGTTCAAAGTTTTTATTTGAATGTCCATCCATGTCAGCGTTCGTGTATGG
GCTGGGCTCATCAGCCTTCATAACGATGGCTGTTTGGTTGCCGGGTCCTAAAATACAAGT
TATTTTGCCGATACAAAGGCCAGATCCAAAATATCCTTGTTGACGCTCGTCGCGTCAAAG
TGTCGGACATTCGCACAGCGATCCACCGAGCGTGAGAATTGGACCGACCCATTCCTACTT
TAGGAAATCACTAATTAAAGCAAAAGATCGATCATATAATAAAAAAATAGTAGACTCTTC
TAATTAATTATTGTACATGTTAGCTATAAGATGAGCTATAGATGCGATGATTTATAGCGA
GTATCCGACTATGTTATTAACCATGCTTTTAGGAAGTATTTCTTTTAAAGATCACTCACA
GGATATTACCCCTGTGTATACCAAGAGCGGAGATTAGCCGTCTCCAAGACATATGGGGCG
CCTGCCCCCCCCCCTCCCAGGCCGTCTGACGACAGCCGACCTACTCAGCCAATGCGTGCA
TGGCCGGCTGGCGATAGCCGGCCCATTCGGCCAATACGTGCCTAGTCGGCTGGCGATAGC
CGGCTCGCTTGGGCGATGCATGCCTCGCCGACTGACGTGATTCGACCCGTCAGCTGGCCC
GCCGCCAGCCGGACGGTCGGCTCCCGTCCCATTTAACCGTACCTCCATAGAAAGACAAGA
CGGGACAAATCGTACCCAGGCCGCCCAGGCAGCAGTACGCGTTGACATACGTGGCATGAC
CACAGTGTGATGATGGAGGGGTAAGCAGGGCTATAGCCCCCCTGTCACCACCGACGCTGA
CAAGGCGAGGCGACCCTATAGCCACGATCCCCCCATGCGCATGCACCTTGACGACTCGGC
GCGTCAGCTCCCGATGCACACGACCGACGGGCCCCACGCCAGACAAGACTCGACAGCCGG
CGGGCCCCGCAGCCAGCCGGACCCCACCTCATGTCCTATCCTTACCACTGTATCCCCCTG
GCTACACTACAAAGCCTCCTCCTAGTCTCCCGAGGGAGGGACGGCGAAGGCAGATTTACA
TACGCACAGACACGGAAAGAAGAGAGACACACCCCCACGGGCAGATAGTCGGCCCAATCC
ACCTCCCACGTAGAACACCATTGAGGCAGCGAGACAGGAAGCCGGAGCTCCGTCTCCCTC
CTCACGAACAGCTCAAGGAGCACCCTTTGTATTGTGATTCTCATATAGTNNNNNNNNNNN
GACTAGGGGTTTTACCTCACCGGAGGCCCCTAAACGTGGGTAGATCGGCGTTCTGCGTGT
TGCGCCTACATCCGTTTCGAGACGCCATCGGCGCCCATAGACCCCAAACCATGAGTTAAG
CCACCCCATGGCAGCTGTCCCGGAAATACCACGACAATCACTCTCACCTTCTTAAGTTGC
GATAAATGACGCGTTGCATGCGTGTCGCTTGTCGTAACCTCGGAGTTTTCCGTTTTTTCG
TAGATCCGTATTTTTAAAATGTTTTATCTCCTAAACCGCGTGTCCAAATCTTGAACCGTT
TTTACCGTTAGATTTCTCACGTCGAGATCTTCAAAACTAGATCCCATGTTGATAGGTTTT
CACAAACTTTTTTTATGAAAAAAAACGGACCAAAAAACCGTGCCTCTCGTGATAGGAAAA
AACTAGAAAACGTGTTTTTTTCCTTTCCAAGAGGTACAACCATGCCTCTCACGAAGGCAA
ATCCATGTCTCTCGCGGAAACAAAATCATGCCTCTCACGAAAAAACGTGTTATTTTTTCC
TTTCCGGGAGACACGGTCGTGCCTCTCCCGAAGGCAAAATCATGCCGCTCGCGAAAAAAA
CACGTTATTTTTTTCTCTTTTCGAAGAGGCACGGCCGCCCCTCTCGTGAAAGCAAAACTG
TACCTCGCGCAAAAAAAGTAGAAAATGCCTTTTTCGTTTTGAGACGCACGGCTGTGTCTC
TCACAAAGGCACAACGGTTCTTATCGCGGAAGCAAAATAGTGACTCTCGCGAAAAAAATA
AAAAACACGTCTTTTTTGCAAAAGAATTTAAAAAATATTTCGTAAGAAAACTAACACAAA
AAAACAATCTAAATAGACGAAAAAGCATGCAAAAAATAAAAAAAATCCAAAGGAAACGCT
AAGAACGCGACATGTGGCGATGAGTGAAAATGCATCTAGTGCCGACACTTAAAATACTCG
TTGGGAGGCTCCCGAAAGAACACTTGCTAACTAGTGACTTCCCCTAGTTGACTCTCCTCA
CGTCAAAACATTGGATGTTCTACAAGCAATCCCCTGAGCCAGCCCCTTCTTTCCTTATAA
GGTAGACAGTTTCAGGAACCTTTTCCTCAACCGGTTCGCACTCGTCAGTTCAGTTTTGCG
ATGACAGAATCGGTTCGCACTAACCGATCTACAAGGTTCCTTGAATCGGTTTTTTTGTTT
CTTAATGGATTTTATCTTTCTTTTTATCTTTTTTCCTTTTATTTTGTTCCTTTTTTTCTT
CCTTTTCCCCTTTTTGTATTTCAAGGTTATTTTAGCTTTTTCAAACCAAGTTGGATTTAA
TTTTCTTTTCAAAAAGTTCTTGTTTTATAAAAATGTTTGTTTAAAAAAAATGGTTTATAA
CTACAAAAATGCTTTTATTTTTTAAAAAATGTTATTGTTTTCATTTTATTTTTTCTTTTC
CTTCATTTTCTTATTCTCTGTTGCTATTTCTTTTGTTTGACATTTTCAAATTTTTGTTTG
AATTTCAAAAAATGTTCCCGTGTTCAAAAAATTTCACAGTTTTTATTTGAATGTTCATGA
TTCAAAAACTAATATGGACTTAAAAAAATGTTCTTGCTTTCGAACTGTGTACATATTTTA
AAAAATGTTCGTTTTTAACAATTGTTCTCATATTCAAATAAATGCATAAATTTTCAAAAA
TGTATTCGCTACACTATAAATCTGCCTCCTAGTCCCCCGAGGGAGTGACAGCGAATAGAG
AGGCAGATTTACACACGTAGAGACGCGGAGAGAAGACAGACACACCCCCACGGGCAGATA
GTCGGCCCAATCCACCTCCCACATAGAACACCATTGAGGCAGCAAGACCGGAAGCCAGAG
CTCCATCTCCGTGCTCACAAACATCTCAAGGAGCACCATTTGTATTGTGATTCTCATATN
NNNNNNNNGGCAGGACTAGGGGTTTTACCTCACAGGAGGGCCCTAAACCTGGGTAGATCG
ACGTCATGCGTCGTCGGCGCCCATTGGACCCAAACCATGAGTTAAGGCACCCCATGGAAT
CTGTCCCGGAAATACCACGACAGTTGTGACGCCCTCGATTTAATCGNNNNNNNNNNNNNN
NNNNNNNNNNGTACGATCAAACTCAAGGACTCGCGAGAAGATATCACAACACAACTC