Contig Data
morexGenes
Links



Map Locations of contig_406835 (5907 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_406835

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_56272 5 2236 bp AK356412 Available Available None





CDS Structure of MLOC_56272






Contig Sequence (5907 bp)

>contig_406835 5907 assembly3_WGSMorex_rbca.fasta
TTATAACGCTCAAGAGAACCATCAGAGTGAGTCTTAATCTTATAGACCCACTTACAAGTG
ATGGGACGAACATGGGGAGGAAGAGAAACCAGGTCCCACGGGCCATTGCGCTCAAGGGAA
GCAATCTCCTCTGCCATCGCAAACTGCCATTCAGGATGAACAATAGCATCTCGATAAGAA
GTCGGTTCAAGAACGGTCTAAAGACCGTAGCAAGAAGGAGAATATCGGTCAGGGGGCGGA
CAAGGCCGAGAGCGAAGACCATAAGTCGGCTGAGAGGAGGAAGACGACACACCAGAAGTA
GAGGGCGCATCGGTAGACTTGTCCAGAACACGTGAACGACGAGTATAATGGAAAGGAAAG
GACTGAAGAGGTGGAATGACTGGAGATGAGACCGAAAGAAGCACGAGTTGCAACGTGCGA
AAAAAAAACCTAGAGCTCTAATACCATGTTAGGAATAGCAACTCGTATTACTAGGAGGCC
AGATCCACCATATATATGATGTACATGAGGATGCNAAAAGGCAAGAATACAAAAGGCCAA
AGGCCATCATCAATATAACTCAACAGGGGAAAAGTGATTGTCGCGGGCCATGGCGGCCCT
GCGCGGCCCAGATCTGGACGTCCTCAACTCTGCTGCATGCATCAGCGGCCGGCGGCCGCC
ATAGCAGCGCCACAGTACGCGCGGTCCACGCCATCTCGACCTCCCCTGCGAGCAGGCAGC
CGTCCGCCGCGTCACCGCACGCTCCCACCGCTCCAACGCTCCCAACAGCACCGCGCGAGC
ACACGAATGAGGGCCCCGCCTCCGCCGTCCACCGACGAGGGCTTCGCCCGCCGGCATCCG
ACGGAGATGGCGAGGGGAAGGAGGTGAGATTGGGGGTTTTTCCACCCGAGTCACCCCTGC
GACGCGGGGGCTGTGGGGGGGGGGACAACTGGCTCACACTTCTTGTCATTCTACCTTCAC
GTATCTTTGCAATACAAAATGTATGTCATTCTACCTTTACTGACCTCAGTTTGGAAGTAA
ATTATTGTAGTTTGTGCATAGATGGAGAAAGCTTTCTGTACTATGTGAAGTAGGAAAAAT
AGAAACAAAAGAACGGGGGAAATGTACATCCATATCTTGGTGTGTCCACACTTTATAATG
GTTTCCGCTTTCTGTATTAAAATAAAATCATGGATATAGAATACGTGAACACTTGGGTTA
TGAAGATATTTACAAGTTTCTTTTGCAGGATCTGAGGCAATGTTTGCTGATCTATGCTAC
TTCTCTGTTAGATCTGTCCAGGTAGTGTTTTCTACTGTCTGAGGGCTCCATGCTACACTT
CCAGTACATAGTTGATAACTTACTATTGCTCATATGTTGCAGCTTACCTTTGTGTGTCTT
GTTCTTCCATGCCTTCTACTGGGTTACCTAGGGCAAGCTGCATTTCTTATGGAAAACTTG
ACTGAAAATGAGCAGGTCTTCTTTTTATCTATCCCGAGTAAGACAAACTGGTTTCTTTGA
AGCCCATTTCAAATCTGATATGTTTATTGCCATGTAATGTTTCATGCATTATGAAATTAT
TATATTTTAGTAAAAGTAAGCTCCTTTTTATTTTAAAAATTAAGCTTCGGTTTACCACTT
GTCCCTTCTTGATAACTGTTTCGTTCCATATTTCAGGTCAGGTGTTTTGGCCAGTGGTGT
TCATAGCTACTCTGGCGGCACTAATTGCTAGTCGTACTATGACAACTGCTATTTTCTCAA
TCATTAAGCAGGCCACAGCTCTTGGCTGTTTTCCCCGCCTCAAGATTATTCACACTTCAA
GAAAGTTCATGGGTCAAATATACATCCCAGTGATGAACTGGTTTTTGCTGGTTTCCTGTC
TTGCGTTTGTTACGACATTTGGGAGCATTAATGAGATTGGCAATGCATATGGTGCGTAGG
TTTAGAATAAGGGCCACTCTGTTTATTCACATAGAATATTATCTGCTGGTTCATTCCTTG
GTGCGCTAGTTCCTCTGATTATTTTTGTGTGCTATAGTTTCGCTTCCTTTATAAATGATG
TTCCATTTAATTTTTTATACCAAAATAAGACATAACTTCATGTCCCTTACTAAGATTATA
TTCGGCTGAAGTGTAAATTTAATAGGCTATGTAGGATACGAGGAAAGGAAGAGAGTTCTA
AGCATTTGAAAATTAAGTCAAAGGCATTTCATAAGAACTTCATAGGCAGCCAAATGAGAT
GCACAAAATGATAGATGTAACTATTGTTCAATAGCACTATTATTTGACCGCAAGAAATAT
TGCTTGGCATTTTATTTTATGAGGAGTTTTGACTTGTTTGGTGAATTAAAACATTATCAA
CCAGCAGTTTCTCATTGGAAGTTCTGAGATGTACTCATGTACATTACCTCATTGCATAGG
TAGGGGCTCAACTATGTTTTTATGCTGGCTTTACAGTGTTTCTCATGAGATGCATAGCGT
TGAAATTACTAGAACTGGATCTGTTCAATTTGTGCCTATCATGTACGTATAAATGGTTGT
TTAGAACTGTTGTCAGTTCAATATTTCTCTGTACTAGGTTTACTTGATGGACTTGGTAAT
GCTTTAGTATGGTACTATATTAAGCATTGTGGATTGGCCAAAAAACATAACATTTATGAC
TTAGGTTCTGAATAAAAACCAATGTCCTACGTCATTCAAGCATTGATTTGTTATATACGA
TTCCTTTCTTTCACTCTAATTGTCACCACTACGGCCACATAATCTTTCTAATGCCCAATA
TTTATTACAGGTATAGCTGAACTTGGGGTCATGATGATGACTACTATATTGGTGACCATC
ATAATGCTTCTGATATGGCAGGTCAACATCATTGTCGTTCTATGCTTTCTCACCCTCTTC
CTGGGCCTGGAGCTATTTTTCTTTTCTTCTGTATTGGGCAGTGTAGCAGATGGCAGTTGG
GTTCTTTTGGTATTTGCGGCTGTACTGTATCTGGTAATGTACATATGGAACTATGGGACC
AAGTTGAAGTACGAAACTGAGGTTAAGCAAAAACTTTCGATGGATTTAATGATGGATCTA
GGCTGCAATCTCGGTACAGTCAGAGCGCCTGGAATTGGATTGCTTTATAATGAACTGGTG
AGGGGGGTTCCTGCAATCTTTGGTCACTTCCTAACCACAATGCCAGCCATTCATTCGATG
ATCATTTTTGTCTGCATCAAGTGGGTTCCTGTTCCTGTCGTTCCTCAGAATGAAAGGTTT
CTCTTTCGCCGGGTCTGCCCAAAGAACTACCATATGTTTCGCTGCATTGCTAGGTATGGA
CATAGAAAAAGTTCTGCTTGGCTTGAAACCTTCCAACTCATAATTATGTTATACTGACTG
CACTGGCTTGAAACCTTTAAGGTATAATAATGGAACATATCTATTTATGTTTGGTATCCT
TACTGTCACAACAATCTGTTTTTCATGTAATGCCTGCTTTGCATATGAAATATACTCCCT
CCGTCCAGATTTAGTTGACGCTCAAACGGATGTATCTAGAACATGCTAAATGAGTGAATC
TACACTCTAAAACAAGTCTATATACATTCGTATGTAGTCCGCTTTGAAATCTCTAAAAGG
ACTTATATTTAGGAACGGAAGGAGTGCATCCGCTTGAGCGTCAACTAATTCCAGACGGAG
GGACATCGGCAGGTTCTTCTGGGAATACTATAGTTTAGTATCCCCTAATGCTGTCATTCA
TATTTCACACTGTAGCCAGTCAAAATGTTTTTTTCTCTCTCAACTGATCATATCAGGGGA
TTCTTGGTTCTTGTGCAGAGCACTTTTTACTTAGTGATCTATTCCGTTGTTTTGGAACTT
CATTTTTTATTCCTCAGAAGAGTTTATGCGATATACACTGGCTTGAAATGTGTCAGGTTG
GCCCTTGGTATTTTCTTAGCCTATGCATAGTTTGATATGGCCATAATAGCAAAGCTGTGT
CATATTTATAGGATAGCTTTATGGCGAGGAGAGTTTATTTGCTACCTGTGCTAATCATAC
ATGTCTGCAGGTATGGGTACAAAGATGTACGCAAGGAGAACCCCCAAACATTTGAACAGC
TTCTGATAGAAAGTCTAGAGAAATTTATACGGCGAGAAGCTCAGGAGCGCTCCCTGGAGA
GTGATGAGAATGGTAACACGGACTCCGAAGAGGAGGTTGGGTCAACCTCATCAAGAGTTC
TTGTTGGTCCAAATGGTAGCATCTACTCTCTTGGTGTTCCACTCCTTGCGGAGTCTGCTG
GTGTTTCAAATCCGAACTTGGGATCAAGCACATCATTTGATGGATCTCTGGACGGGACAA
TGGATGGAAGGCGAAGCCTGGACAATGAGCTGTCTTTCATCCACAAGGCCAAGGAGTGTG
GCGTCGTTTACCTTCTTGGACATGGCGACATCCGAGCTCGGAAGGAGTCATTTTTTGCCA
AGAAGCTAGTGATCAACTATTTCTACGCGTTTCTGAGGAAGAACTGCCGGAGAGGCATAG
CAACGTTGAGCATACCGCACACAAGGCTGATGCAGGTCGCAATGCAATACATGGTGTAGG
GTTGTTTTTACCCCAATTTTTCTCTCCGATGGCCAGGGTGCTAACTCGTGGTAGATAAGA
GGGGCGAATGGCACTGTTTACTGGAGCTACTTTCATGCTATAGATTCACTATTTAGCGGG
CATTAACAAAGGTACTGTTTACTGGAAGGCTGTCGGAGACTGACCCGTTTAATGAAAACA
TGAAATCTCCGTTTCAACATTTTTGTCAGCTTATGTTCCCTTCTTTGGTAGGAAGATAAA
CCATGGACTGCTGCACTGATGGTTTTAATTGCCTGTGCGTGCGTGCGTGCGGGTGCGTGT
GGAGGAATGAACTATGATGTATCCAATTATACACCTGCACTACTGACAAAACTAGACGAG
CATCTCACCTACTAAGAGGAATGCTGCAAACTGGACAAGGTCCATGTTCCAAGTACGCGT
ATAAATCAAATGCTTAAATTATGCTCTCGCTGGTGCCTACTACTAAGAGAGAGCATGATG
CATGATAGTACGATACGGTCTCACCTGCTGCGGTTGTCAGTTTTCGCGTGTCCGTACGTG
TGATTCTGTGCAGGGTCAATCGGGACGGGACGGGACGTTGATGCCTGCGTTAAACCTTGT
CTCTTGAGGAGCCGAGGAATCTGCAGAGAGCTTGTTTGGGATTTTGAAAAAGAAATCGGG
AGTCGTGGTCTCGTGGAATAATCACGGCCGATGGAGCTGCAAACTAGGGATATTAAATTG
ACAGTTTAGGGGACATTTCTTTGGACCCAAGCCAAGGTGTGCGTTGCCTTCATTAGAGTA
TTTTCAATAAATGATGTATATTTTGATGCTCCAAATTAGTAATGTAAAAATTTAAAACAT
CAAAAAGTATTTTTTACATCTTTAAAAAAGCTCAACTCCAATAATCCAAAACATAGACGA
CATAAATTTAAACTAGCAGAACTACTCGTCTGAGGGCATCCAGTACGACTCTTCGGAGTC
ATCCGAGAGCCCCCAGAACTCCTCGTCCTCCTCCGATGATGACTCGATGGGGATCACCGT
CGAGGGGCCGGCCTCGTCCTCCTCCTTCGCCTCCGTTGCTCTCGTCGGGAGTGACGACAA
CCGTCGGTCTCCTTCGTCGTCGACATCTCCATCCGGATGCCCTGCGACACGAGCCACTCC
GTCACCGCCCGGGTCTCGATCTTCGGGAAGTTGAGGTCCGTCTTCGGTCGTCCGGCACGC
CACATCGCCATGTCGTAGGCACGCGCGGCCTCGTCGGCAGTGGTGGGATACGTGTCGAGC
CACCAACGCCGCCAGACATCGGAGAAATCCACTCCGAAGTTCCCGTAGGGCTTCACCTTC
ACGCCGAAGAAACCCGACTTGCCCTTC