| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_40681
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_56278 |
4 |
2119 bp |
MLOC_56278.2 |
Available |
Available |
LOC_Os04g16450.1, FRAME:+1, EVALUE:3e-135, 13104.m01485 protein aquaporin protein, putative, expressed |
| MLOC_56296 |
10 |
3795 bp |
MLOC_56296.2 |
Available |
Available |
LOC_Os08g44860.8, FRAME:+3, EVALUE:0.0, 13108.m04884 protein aminopeptidase, putative, expressed |
| MLOC_56270 |
2 |
1808 bp |
MLOC_56270.1 |
Available |
Available |
LOC_Os02g15550.2, FRAME:-2, EVALUE:0.0, 13102.m12384 protein spermidine synthase, putative, expressed |
CDS Structure of MLOC_56278
CDS Structure of MLOC_56296
CDS Structure of MLOC_56270
Contig Sequence (10198 bp)
>contig_40681 10198 assembly3_WGSMorex_rbca.fasta
TGATTTCCCTACCTTACTCCTCTACTTTNNNCTTGCATGTTTACTTTCCACTGCTATACT
ATTAGAACTCCATGTGTAGGGTGTACTTGACTTGTTATAACTGTCGTAGTTGTCTCTCAA
GTAAAATTGGGAAAAGACATACTTTCGGTCCTACAGGACGTCATCGCCGTCGTCGTTCGT
TTGGAGGCGGAGCTCCGTGGCGCGCCCGACAGCGGCATGATGCCACCCTGCGCACTCGTC
CGGGGCGGCATGAAGAGCTCGCGCGCGTGGCCGCTGATCGACGCCACAGCGGCGCCGGTG
GCGGCGGAGGAGGTCAAGCCCGCGTTAGGGTTTGCGACAGCGGCACAGAGGTCGCGCGTG
TATGCAGGGGTTACGGGAATATCGGAGCACTCGTCCATGGCTGAAGGTCGTTGGCGAAGG
CGCGGGGCTGGGTGAAAGCGTGCATGGACGGAGAGTTCAGTGGCGGTTGCTCGCTTCGCG
CGCGCGGTAGTGGACGCCTGAAAAAATCAAAAAAAGTACTGCGCGCATAGTAGTTTTTAG
CGCTCGCGCAATTTTTTATGCGTGTGCTGGAGCTGCCGATTCGATCACACGTGCTAAAAT
TTTACTTTTTCAAGCGTGCGGCTTATTTAGCACCTCTGTGGGCCACCCTGGTGCACAAGG
CCTTTTTAGTCAATAAATAATGTTACAAACAATAGGTGCTATTAGTAAAAAAAATCATTC
GTATTCCTGTGCATACGGGTCGGCCCAATGGGCTCTGTCCCTTCATCCATTATCGTTAAA
TGAGTCATACCTTTCATCCATTATCGTTAAATGAGTCATACCCTTCATCCATTATCGTTA
AATGAGTCATATCGAAGAATCATCCCAGACACACTATCAAACTTCAGATTTAAGAAACAT
CCCGAACACGCTATCAAACTCCAGATTTGGCACCCCTGTATGACTAAGTCGTCGAAGGAG
GAAACCACACCTGCCATTCACGAACCACGAATCCAACACGATCTACCATCTTTTAGGTGT
CATCGATGCAGACCATAATCTGTATCCGTTCTTGGACTATCTCCCAAGCTTCACACTGAC
GTTGGAACAAACGTCATCACAACATCCGTTCTTGGACTATCTCCCAAGCTTCACACTGAC
GTTGGAACAAACGTCATCACAACAACGAAGCCCGAGGACACAGGTCCACCACAAGTATAT
CGCCGTTGCGTCATCCTTGCATGAACAGTCTAGTTTTTAAATACATTCCCAACTATAGAA
CCGATGGCTCCGTCACGAAAGGACCAGAAGAATCCACGAGGATACCGCCATCTTCGCCAC
CAAAATTTAAGCACGCTCTCGATGGAGGAGCAATATGATAAAACCCTACCAAAATTTAAC
CTTGCAAGGTTTGTTGCTCAAATTTTGACCAGAGAGTAGCCAGGAAGTAGGCAAAAGTTT
GACAACTATTCAAACAGGAGCCAAATTCTTATGCATTACCCAAAAAAAGGTACGATTAGC
TTGGAGAAGAACTAAATACACCCAAAATGCCCACATGTGCCCCAGCGCCAATAAGAAGCA
AGCTACGGTAATCACACAATTTTCTCTGGTTTATCTATTACCAGGAATCAGTCCAACAAA
TCTTATCATACCATAACATCAATCGCACAAAGCGTACGGCCGTATCCCATGCCAATTATG
TTGCTACTATACTCGTAAGTACTACTTGATGTCCAGCATGGATACTACTGTAGTGGAGAG
GAACCGTTCCCTGATTGAACGAGTCCCCGAGTCCTCGTCTAAGCGGTAAGAATTTCACTG
TGTGGCACGATGGCAACCTTCGCTGGTTCTGCTGATGTTTCCTCTTGCTGTGCCTGTGAT
GGCGCAAATAATCTCCAGTTAAGCTTTTTGACAGTTCACTTGTTTGGCATAGGAAGAACC
AAGCTACATAGGGTAGAGAACTAATTCAAGATTACTAGAAAATTTGAGCAGCACGGGGAG
AGTAGTCATCTTACTATAATATTTGAACATATAAACAACGACTTTGTGTATGCATCTCAA
AGACCTGAAAGCAATAAAGCTAGGATATGTGGCGACTAATTAATTTTTTAGACTGTTTGC
TTTGATTGTTTTAGCACGTAAATGTACAACCAGCCAACAAGCCTGAACTTAAATGTGAGA
AATTAAATGTTGCAGTCAAGGAAACTCTCCAAATTAAGAAACCACGCCAAGTACAAGAGA
GGTAAGCGCCACAAAGATTAGAGCTGTAACTTTTCATGGCTTTCTGGGTAGTCTCAGAAA
GCAGGTGGAAAATGTAAATTGTGCTTTCAAAGATTTGTCCTAATTATGAAACACACCAAG
TAAAGAGAATACACAGGCAGACTTATCTTTAACAAATTGAAAAAACATACCCTTCTAGTG
GAGCCACCGTATGTTTCTAGCTCTCTCTTTGCAAAGGTTGGAAGAACAAACGCTGCCTTA
TGCATCTGGTCAGCAGCCAAAATAACAAATCAGTGTGCTTATGGATGGCAATGAATCGTA
ATGCCATATTTCTCACATCTGAGTTGGAGTGGAGTATTTTTAAAGAATAAACATGAGGTA
TATACAGTAACTTCGGACTTGCAGAGCATGAAATCATCGTAGCAGAAAATTCGAGGAAAA
ATAGAATTCTGCATCATTTTATTAGGAGTATATACTACAGCATACCAAGACAAAAGCAAT
ACAGTATATTGTAAAATTAGCAGAATAGGTAACTTTCTAAACAGAAAAAACCTCTGTGTT
ATAAAATCTGATGTCCCTCCCTGCTGTCATAGCGCCTTCTAGTTTTTCGATTGGATTTAT
GGGTGCCAGGAAGTTGACTGGTGGACCCTCTTTGGCACATAGCAAAAATCCAATTGCACC
ACTGCAAATCAAGTGAATGTTGTGTTACAAGTAAATTTCAAAAGGAGCAACATTTAGCAC
GTCAAAGACTTCATATAAAGCTGCAAGTCAGCCACATTTGTTTATCACAACCAGCAGCTC
TTAATGTGTATACTAACAGGAATGGCAGCCAGCAGTGGGTTGCCTAATCAATGAAACTCA
GATATATTATGTTCTAATTTTTTGTACCAAATTTACAAGGGCAGCTGACACCAACACTTG
ATAACAGTTGTTTAACTAAAAGGTTACATAAATTGGCCTAGCTTCTCTTTCTAGGAGGAA
TATGTCCTGAACTCCCAAGATAAAATAGCATCCCTAACAGCATTTGTCTTCCACAAAACA
GCGATGCGAAATCTCTTAATTTGATGCTGATGTGGAATATGCAACATGTGTCGAATATTT
CCATCTCCTGTCTCTTGCTGTGTTTCTAAACACAGCATATCAGGATGGTTTCTCATTTGC
CTAATTAAATCAGGAATGTATTCATGGCAACAATACCTATCCAATAATAATAAAAGACTG
CTCAAAGTAAATAACTGGTGCAACAAAAAATAAATAAAAAAATCAGTAGCTTCAATAAAT
AAATTACATGTATGGTTCAGATCCCAGCTGTGTTCAATTTTGCATAAAGAGGTTTAGGGT
TTGATCCACCATAGTGCCAAACAGGTCCATCTAGGTTACAAGTGGTCACTACTGTAAAAT
TACAACATCTCGCATCAACCAGCTAGCACGACATAAACCAGGTAAAATGTATATATATAT
ATAATGTTGGGAATATTTTCTCACTAATATTTTGTCAGAGTAAGATGCTCCTTGCATGAG
TTGAGCTATAAATCTGAAACATCCTATCATTGATTGCCCAGCGCTGCAACCAATTTAGCT
GCCAACAATAGTGACACCCATGAGGATGAAGCCAGAAAGGTAGTGCACCATTAGAACTAA
CCAAGTCCTATGTGCCACCACACTACTAAACTCCTCTTGCTGAGATATCAAAAAAGAAAG
AAGAATGTGTATGCAGCAAGCTTACTCCAAGTCCCTTGTATGTGCATCTACTCAGCTGGG
AATAGCACAATAAGGGATTTGCACGGCTTGCATGCATTAACAAAAAAAATGCAAGGAAGC
TCAACAAACCATACCCATATATGTTATGTCTTATCTGGTAACAGTTTCAGTAATGAAAAG
CTTTACTGTTTCATGTCATCCAATATATCTAATCTACATGGCATATAAATACATGAACTG
TGTTACAACCAAATAAAAAGGCTAAGTCTATACTAATAGGTGCATGGTAAATTTAACACA
TCATGCGGCTTGGCTGTTGCTATGAGATATAATAGCAAACTGTCAAATCTACCAAAACAT
AAATAAGAAAACTTGTGTTTAAAATATATACAGAGATGACAAATGCTTTTATTATGATCC
AAAACAATGAAACTGGCCTAACAGCACTTCAATGAAAAAAAAACAAAGAAAATTTACAGG
TACAATTATAACAATACATAGTTTTATTTCTCTATTTACAATTAAATTACTTTAACAACA
GTGGTACAAAAACTTTTGAGCAGATGATGCAAACATATGGGTGGATAGTTAGTGTGTTTT
TTATTTTTAACTCAGAAGTTGTCCGAGAGGGAAAAAAATGAGAAGTCGAAACAGAATGTT
CAGTTGCAAAATAAAACATTAACCTAAGTAAAGACCACAAAACAGGCGTGCATAAGAAAC
TGATGAGGTATATGAAAAAGGGTGAAAACCTAGGATATGTTGGGACACTTGTCCAGGCAT
AGTGGACAGAACCCTTGAAAGTCTCACAGCAGATCGAAAGCATGTCCTGAATCAGATGTG
TATGCAACCACATACTCTCAGCTTGATTACAAAGAACACCACCAGGTCTCAAAGCTCTAG
CAATTGTCTCGAAAAATGGCTTCTCTACAAGTTCCTGAGCAGGCCCTGCAATTGACAATG
CCGAATGGATAGTGTAAGAACGACAAGAACAAAGATAAAAACTCATGGTTTGAACTTGTC
AAAAGAGAGGATATGCCACAGTTGCATAAGCTGACCTATAGGATCTGACGAATCAACAAT
AATAGCATCATATGTGCCTTCAGGAGTATTTCTCAGGAACTCCACAGCTGGAAGGAAAAC
AACTCCAGTATGAAATTTACAACATCAACTTCAGGCTACACCTAGTGGTTGCAAATATAT
ATGAAATTTACAACATCAACAAGTACTGTTGTAATTATGGCCTCATGGGATTATCAACAT
ACCGTCACCAACATGAAGTCGAACACGAGGATCTTTAAATCCAACAGATAAGTCTGGGAA
GAAATCTTTACAAACCTACACAGTTATATGACCAACATGATACATGTCAGAAATTTTAAT
AACATGGCTATATTTCTTCATATAGGTCATAGGAGAATTTCGTACATCAATAACTAGCTG
ATCAATTTCACATATATCAATAGACTCCACTGAACCATGTCTGGCTATCTCTCGAAGTAC
ACCACCATCTCCACCTCCAATAACCAAAACCTGCAATGTAGTTTCTAAGAACATATGTGA
ATAGAGTGCTACATTTCCAATGGAAATGCAGATAAGAAAAGTTAATCTGCTGCTATATAG
CAGCAGAATATCGTCAATACAATTTCAATCATTAGATTAAAAGAGTCATATAATTCACAG
TATAAGAAGGAACATAGATCACAAGATTAGATTAAAAGAGTCATATAATTCACAGTATAA
GAAGGAACATAGATCACAAGATTACCTTCTTAGGAGAAGGAATTGAACATAGTGGAAGAT
GAGTAATCATTTCCTGGTAGGCACATTCATCCTTATCAGTCAATTGCACAATACCATCAA
GCACAAGGACTTTTCCATAGGTTAACGACTGCATACAAAAACAACCAGGTTACCAACAGA
AGGCAAACACAATTTTCCCTCTGGGTGTTAATAGATGAAGCTAACCTCAAAAATCAAGAC
TTCTTGGTACGGTGACTTCCCCTGGTACAGGATCTTTTCCACTTTCAAGGAATGGGTCTC
TCCTGAGTAGGGAAAATGGAATCACGATGACTGAGGAAGAAGTGGGCTTGTTTCATTGCA
CAAGTACATGACCAAGAAAAATGAGAACTGAGACGGTAAAGAGCAATTGGAAATTTCAAT
GTGCTTGAAGCGCATAGTACATGTAAAGAAAATTGTATCTTTGCAGAAACAATTGAACAT
ATTTAAGGACAAGTCAAGATTCCCGAGTATAATCAACACACACATGATTCAGTGAAACAT
AAACACATTAAGGAGGTCAGGAATGAAACTAATGCCAGAGACATCCGCAAGAGAACTAGT
GTATTTGTTAAATACACGATTTAGGCTAACACACATGATTTAATGTTCAAATAAAAAATA
AAAAATTCCAGAGGTTAGGATATATGAAACAGAACAAAAACCCATGAGTTTTCTTTTGAA
CGGACTGAAATTAGACACTAAAACCATTGACAAAGAAAAGGCAACAAGTAGCACTGGGTT
GCATATGCTCTCTAATCAGATGATGAACTGAAGAGGAAAATTACACAAACCCAGATCACC
ACTTCAGGATGGAAAGTCAACAGTGTACTCCCTCCATAAGGAATTATAAGAGCATTTAGA
TCGGTCTAAACGCTCTTATATTTCTTTACGGAGGGAGTAACAAACTAATGAAGAGAACAC
AATCCCTGCTTGTGGTGAACATGTTACTATGTTAGATAAATTTTGCCCACCATACTTCAC
AATAACCATGTCAAAAGGGGTGTGTTGAGTAAGTATATTAATAACATAATTAAAAATAAA
CCAAAACCATTTGTTTAAACAAAACTGAAGAGGTTGAAGACTAATATTTATCAATAGTTG
GAATTTCTCTTGTCAATACTGAGTCGGACTAAATTATTTTCCCAAAACAAAAAGGCTAAA
GCATTCATTAGAAATCCAATTTATCGATTAAGCACTAATACCATGCCCTAACATCAATGC
AGGCATGAATCTGTTCAACCAGTAATCAAGCGTCTACCAGAATAGCATTTTGTCGCATAA
ACGGATGTAGAGAACTTAACATTACATTCCTATTGTGGATTATTATTCTAGTTACAGGTA
TATCCATCAATCAATAGAAAAAAAAAGGCACCAGCGAGGGAAATACCTGGCCACATTGGG
TTATTGTAATACTGCAGTTTGCTCGCTTTACCTGCATATGAAGCAATCAAATTTAGACAA
AATAACTGGAGAACGATAGGAGGTTATAGTATTTCTGTTGTCAAGTACAATTAGCAAGGA
TGATGCAATTGAGCACCAAGCAGGACATACCACATCGGGAGTGGGTTTCTGTGAACCATC
CTGACACCACAGTGGCATGGCACTTGGCCTCAGATTCAGGTGCTGCAGCCCTCGCCTTGA
CACAGCAAGGAGGCAGCGGCTTTGCTGGGCTGTCAACCCCACTTCCCTTTGTCTGTGATG
TCCCAGTCAAACCATTTCTTACGTCTCCACCCTCCATGGATCCTGTTCTTTGAAGTTCCC
AGCCTCTGCATAAACCACAAAGACTTTTAGCAACAATAAGTACTCAACACAGGAGTATAC
ACATCAATTTCTGCGGGAAACTTGGCACTAGTAAATCAAATAAAATTATGATACCCAAAC
ACACATATACGAAAGAAAATGCAGGTCATAATGAATGACACAAGATCACTGACACGCATA
ACAAGCATGCACCATGGCAGACATATAAGTGGATGAGTAACTCAGTACACATGCTCTGCA
AGGCTCAGCGACACACTAACCTAGTATTGATTACAAGAACATGGATTTTAAGAGCAGCAT
GTATTGATCACGAACTGAGAACCCTTTCATAACATGAGGTTTTGGAGCAAGCGGGTGTTG
CCCGCCTAACGAAAGAATCGATTTTGAGCTGATACCAAAAGTGGAAAAGAAAAAGGAACG
ATAAATACAAGAGGCTTTGACGTGCGGGGTAGGATAGGATTCCAGAAGCTCCTTGCAATT
ACGGTACTGACCTGTGAATGGCAAATCGAGGTAGGGCAAGGAGGTGGCTGCACAAGGTAA
GAAGAAGGGCAGGACAGCGAGCACAATAGTGGTGGCTTCTTTGCTACTACTCCAGACACG
AAATTCTGCAGCTAGCTGTGGGTGGAGCTAGAATCTCGGTGGATCTACAACTTTCGGGAT
CTGCACTGCTCAATGTATTCAATGCACTTTGAGATGATTGTCATATTGGGTTGAGATGAG
GTGAGTAGCTGTGCAGCTAGTGCTACAGCACAATGTAAAAATTAAATGCACATTTGTGCG
CTAGCATTAACTTCTATCAAACTTATTAAGCCCCATTTCATTTACTCTCGCCTTCCTAGT
CATTTACATCCCTCCATTGCTGAACCGTGTGAAAATGTTGCAGTCAGCATTTGATTATGT
CCCAAAAATACAGTAGCTTCTAAAGTTGAGTGCATTGACAGATTTATGCTTAATGCTACA
AAGAATAACACAACCGGGGCAAAAATAAAAAAAATAAAAGCCAACCATTCAGGTACATAA
CAAAAAAAGTGCACTGAAAGCCATATCCAGGTCTACCTGCTTCGCCATTCCAACCAGTTT
CTCATCTTAAGAATATTGCATGGTGTCACAAGGTAAGTGCTCTGACACATAAATACGAAA
TCATTTAAGTGTCCCAACTACTACTCCCTCCGTCCCAAANNNNNNNNNNNNNCTTTGTAC
TAGCTCTAGTACAAATTGAGACAGTTATTTTGGGACGAAGGGAGTATGAAATAAGTGATC
TGCTACACCGTGTTGTAGCAGCCAGGTCATTCCAACCCCACATAGGTCTCCCTAGCATAC
GATTTGACTGTATAAACGAACTTGTCCCGTTTGTATTGCAATTCAAATCTCATCAACAGG
TTGGAGTACTTATTTTTCTTCCGGGAGCATAGCTGCTGTGGGGAGTAATGAGATGGGCTA
ATAATGGGACAAAGCCACAAAGTAGAAGGCAAATTGACACGGGGGGAAATGGAAGGGAGA
GGAGCTCCTTCACCTTCTGGGAGCGTGGCCATGGAGAGTATTCCGATAGAAAAACTAGCC
AATCTATCGGATGAAAGCATGCAATGTTTGCAGAGTTTGTCACTGTATCGGCATGCCCTA
ATCCACAAGTACTCCAGCTACATGCCGATACGAAGAAACAACATGGCCGGCGGGAAAAAT
CAACAAATCTGCAAAGCGCGAAACGCGAAACGCGAAACGCATGAGTAGAACCAAAGCGAC
GGCGAGCTTTACCTGGTCGCGGAACAGGCGCTGCGGGGTGGGGGGCGGGGGAAGCCGACG
ACGAAGTTGGAGCGCGGGAGAAGGGCGGCGGCACAACCCTAGCGGCGAAGCTTGATGCCG
GGCACAGTCGGGGTCGACCTGCGGTGGCGGAGGTCGGCTGAGCGGCGGGGTGAGCCGGAG
TCGGGGGGAGGGCAGGGGATGGGATGGCGGCGCCGGTGGAGGGCCGTAGGAAAGCGGCAC
GAGGTCCTCAGTCTGGCCGAGTCGCCTTAGTCTTATCGGATTCAACCCGCCACCCGTGGG
TTCAGGGTTCAGACAGTGGGTTGGACCCGCATGGCCTGGTGAAAACCAGACCGGACCGGT
CCACACCAATTCAATCCACCGTACAACGCGACCAAACCGCCCCGTTAAGGCATCTCCGCC
GGCCCCTAAAACCAGTCTTGGCCAAACCGGTCGGCAGTTCGGCAAGGCCATGAGGGCATG
TACAATGGTTTAGACTGCAGCTATCTCTAACTACTTGACATTTCACTTACAGATGGCTAA
ACAGACAGCTTATACAATGAGCCGTCTATTCGACTGTCTATTACTGCACAATGAATGCAT
GCATCCACGATCAAGCACGGATAATATCAATATACGTTATTTTGTTGCTTCTTTATACAA
ATGAGATCATACATAAATTAGATGATGGTAACATGTGTATACGTGAACTATATAGAAAGT
AATAAAAACAATATAAACTCAAATTGGCACATAATTATTACATATCGAAATCAATAATGA
AACAAATTAACACATACAAAATTATTCAAACTATTTGTAATTATTCACTTAAATTGGTAC
AAAATTATGACATATGGCGATCATTGATGAAAAAATACATAAAAATTTATTTAAACTAGT
TACAATTATTCACTCATCCCCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTTTAGATGTGTTGGTCGTGCACGAATAGAGGAATTCCTTTGTAGCACATTTGTAAAG
