morexGenes - Barley RNA-seq Database

Contig contig_406754
Source Contig contig_406754
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_406754 (7634 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_406754

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_56261	5	3575 bp	MLOC_56261.2	Available	Available	LOC_Os04g52900.1, FRAME:-3, EVALUE:0.0, 13104.m05436 protein ABC transporter family protein, putative, expressed
CDS Structure of MLOC_56261

Contig Sequence (7634 bp)

>contig_406754 7634 assembly3_WGSMorex_rbca.fasta
CGTTTTCGCATAAATCATGTGTGTGTATATAAAGTTGTTATCTGAGTAAGATGATATGAC
AAGTCTGGTGACTTGGCATATAGGATGAATCTGTGGTGTTCAACCCTCAACAGATATGTT
GATATCTGTGACCTGTTCTTATGAATATACATCTAGTTATGATGCATGTCCATACAAGCA
ATTGATCATGCTTATTTACAATCAAAACTTGCTTTCCGCAAAGGCTCCATATTTCTTTAT
TATCGTATCAATTGCATTATCCATAACATGGACTGTTTGCGAGTACATTCAATGTACTCA
TTGGCTTGTCACTCGTTATTTTATTGACCGGACATGGAGGAACCAGAGTATGAAGAAGAA
TTCGTCGTCGGAGACGGACACACGAACTAAGACGCTTTCCAATCAGAATGCTTGTTGGTT
AAGGCTGATAGCATGGGTTCCCGTTTACTACCAAGTATTCCGTTAGTAGTTGTGTTGGTG
TGATTGGCCTTCTTGACCCTATCTATGTAAGACTTGACCGTGATGGTCCTTTATTGTCTG
ACCCGTTTACTACCAAGTATTCCGTTAGTAGTTGTGTTGGTGTGATTGGCCTTCTTAACC
CTATCTATGTAAGACTTGACATCACGGTCCTTTACTGTATTAGACGTTAATTTCAAATGT
AAGGCTTTTGTTATTCAGTATCTGTATGTTCAATAAACATTGATCTCTGGCATCACTGTA
CACGTGCATTCGATGATCTCGACGCATAAGTCGGGATCCCACAGATATAGAGCCCTATCC
GAACAACTACATGAACCGTTGAGGAAATGTTCGTTCTATGACTAGGAAGAATCTCAAACT
TGGTACTCTGAGACAGAGGAATGTGATACTTGAACAAACTAAAAGACTAAATGCAGCCAT
CAGGACATAAAGAATCTACATACACTAATTGCACAATATTATCAAAATTTCAGATGTGCT
GATTGTCGAGACTGTGCACAAGAAATGTAACCCATGCGGACAACATTACAAGACTGCTAC
TGCTACAAATCCCCCTTGTTATTCGCCTTGAGATTAGGTGTCGGCGGATCTACTGAGTAA
CTCCACACTTGCACGTCAATGTACTGGCGATAATAAAATGTACAAGAATGTACTACAAGA
CTGTAGAAATTAAACCGAACGTTATTAAGTGCACGCCTCCAGACAGCGGTTTCAGGGATT
CAGTAGCATTGCAATGCCAGTGTTCTACACCTAAATTTGATCCCAGTCAATAGACCCGTG
GTTTTCAAAACTGTAACCAGGTTGCCGACGGTTGCGACCCAGTTTGCTCATCGTGGCGAG
GCCTGAAATTAACACATTACAGATTTTTAGCATGGGGTCGGATTAGTAGGAATACAGCTG
AATAACGAAAAGCCTGTCAGTGGCAGTGGTTAAATTTTATGCCGCACGTTATCTAGCATT
TCAGAATTATACTACTGAAAAGGAAAGGCGTGAAAGTGTGTCAGAAAGTTAAACTAAGCA
GTTACCTTCGATGACTTTGTAAAGTGACGACCACCACCTATCAGGTGGAACCTGATACTC
AGTGAGTGACTCCTCGATTTCGGTGTTGTGCTTCCCTTCAAGGACGCTCTGCAGGGTGAT
TACTGCGTCCTTAGTTTTCCTGAGGATGCTGTTTCCCTCGGCAACCTCCAACGAGAGAAG
GTCACTGTGGGATGACGCGAGGCTAGCAGCAAGCGCAAACTGGGCAGCAACAGCCCATCG
GTTCGACGCAGCCCATTTCCTCTGAATATCTTGCAACTTACTTTCTTCCTTTCGCAGCCT
CTCTTCACCATTCCCAAGCACAAGAGACTGTTCGGTTTTCCACAGAAAAAATGGATCAAA
ACACATTATCAATGTACACACTGAAAGTAGGCCAACTATGTATATTTGAGCCAAGTTAAT
GACGATAGGCATTATGCCATTATTAGCTCTATATTCTATGCAGAAGTGCATATGACAACA
TTACAGAAAATAAACATGGTAGCAGCTGCCGATTACCTTAAGATATTCTGCATTGCTAGG
TCCTGTACTCTGAACCATCTTGGAGAAAGCACCGTCCTCATTGCTCAGAAGATTCTCGGG
GGTGTCAAATTCTGAAATCTGAAACAGAATATTACTTTAGTTTGGGGTACCAATAGTTGC
GCAGTTGGGGCAAACAGAATAAACCATGTGTGATTGAATACAAAAAACGAGTCAGTATAA
ACTTCTTCCGGTGGAGTGCAAAGATCTACTTGCAACAATTTATGCCATAGCTGTAAAAAA
GTAGGTCAATAACACACCCTTGGACTCTTGTTAGAATCCAAAAAACAACGAAAAACCGTC
CACGCCCAGCTAGTAAATCCCAGCTTTGACCAGCTCGAAATAAACAGGACTACTCATTAC
TTTGGAAAATCAGCACATGACATGAATATAGTACTCCAATTCAAATTAATTTGTCGCTGC
TTTAGTACAACTTTTGTACAAAGTTGTACTAAAGCATTGACAATTAATTTGGATCGGAGG
GAGTAGCACCAATTCAAATGAGATGCATGTCCAGGGGTGAAAGAGCAAAAGCTGTAGACA
CATGCCCGAGAATGAAAGAGCAAAGCTCTATTCAGTATCATACCTTCCCAGAACTTAGAA
TAAGCAACCTGTCACAGTCGATGACAGTGTTCAAGCGGTGAGCAATTATAAGCATTGTAC
AACTCTTGAATTCTTCTCTGATTGTCTTCTGTATAAGAGCATCAGTTCGAACATCAACTG
CTGCTGTTGCCTCATCAAGAACAAGTATCTTCGCCCTTCGTAGCAATGCACGAGCTAAAC
TCAGCAGCTGCCGCTGTCCAACGCTAAAATTTTCACCAGCCTCAGAAACCTGTTAACAGA
GTGATGCTCAGCGAGAACTTTCCATATTGATTATTCTTAAAAGAACAAGGGAGCTACAGT
AAAGGTGGTAAAGGGGACCAAAGTTTGCTCCACATCTTTATTCGACATTAAATTCTCTAT
ATGAAAAACAGCAGTAGTCTATTGTTTAGCAACCAATTTCTAACATTCTAAACAAACTCC
TAGAACTACATAGATTGCCAGATGCTTGCCGGTTCCATGTTCTACAGTTAGTCTGGCACA
ACAAACTGATAAATTTGTGCAAGAATTTATCATTTTTCAAAAGAACAGGATATCAAAGAA
TATATTGACAGTATAACATAAATAAAAGTAAACATGCAGCTTACCTCAGCATCTAGTCCT
AGAGCATTCCTCCTTATGACATCTTTTAGATGAGCCCTTTCAAGAGCCTCCCAGAGATCT
GCATCATTATGCTCGCTGAAAGGATCCAGATTAAATCGAATGGTACCTGGTAGCCATACA
TAAAACAATCGTTCAAACAAATAATTGAAGTCGCCGAAAGAATAAGCTAGAAACACATAT
TTGGATTTCTGTACAGAACTCTTGTACTAATTTACATAAAGCACATATGAAGATCTTATG
TATAGTAACAAACCTGAAAACAGGACTGGTGCCTGTGGTATTATTCCTAACACTTTCCGC
AGATCCCAAATTCCGAACTTTTTAGTGTCACAATCATCAATCAATATTCTCCCACGCTCC
AGTTCCACGATTCGGAATAAAGCATTAAGCATGCTAGATTTACCAGCACCTGTTCTGCCA
ACTATTCCAACCTTCTCACTTCCATTAATAATGAATGATATTCCATGAAGAACAGGTGGA
AGTTCTGGTCGGTACCGAAGCACAACATCTTCAAACTTGATGATACCAGATGATGGCCAA
CCAGGAGGTGGCCTGTTATCCTCAATGACAGGAGGAGCCTCAGAAGGTAACTCAATGTAT
GTCCCCACGCGTTCAACAGCATTCATACTATTTTCAGCAAGACTAGCAAGACGAAGAACA
GCTGTGAGCAGATTGGTGATATTGAGGGTGTAAGTAAGAAGAAGACCCATCGTGGAAGCA
AAGGCCTTCTGATTCTCTGCTCGTTGGTTTTGCATGACTGCAAATGTTGCCGTGAACCAT
ATCATGATGCCACCCAATGTTTCCAGCCGGATGGCTAGCCACCTATTTGAACTCATGTTC
ACAAGTGTGAACCTGATGTTGTTGTCCATTGATTTCCCATTGATGTTTGACATTCTATCA
TAGGCTTTGTAGGCACGGATTGTGGACAGACCATTTAATGCCTCTGAAAATTGAGCATAC
ACAGGAGACCTGGTAATAGAATCCATGCGCTTTACCTCGCGTGATGTGGTCTGAGAAAAC
AAGGTTATAAAGTGGCAAGAAGGTAAGCGTAAAAACAAAGTTACAGTTGTTTAATAGTCA
TCTCGCGTGAAATTACCTGGTAATAAAGGTAGGCTGCATAAAATAAAATCAGAAGCGGCA
TGATAGCCCAAAGAGACATAGTGCTGACAACACCGATGAGAATAAATGTTGAGAGCAACT
GAGATATTTGTGCCATAAACATGTTGACGAAGACAGCAAGATTCCTGTCAATGTCACCCA
AATCCTTCGAAAATCTGTTGATGATCCGTCCAAGTGGATTGGTGTGAAAAAATACCATGG
GAGCTCTTAATATAGACCGGAGCATGTAGTCATGCAACTTCTTGGCTGCTCGAAGACTTG
ACGTGATCAGCCAGTAAGAATTCGTGAGAGTGACTAGAACCTAAACCAAAATTTTGTTAA
TTTGTCAGATCACATGTGATCAATCAGACGCACATACCAAAAAAAAGTGTAAAAAGAAAA
GATAATGAGTATAAGTACCTGCCCAAAAGAAAGAATGCCATAGATTAAGTTGTAGTAACC
AGGGCCATGGATTTTCAGAGAACCCTCATCAGTCCAAATGCTCAACCATGTGCTACTTGA
AATCCGTAGAGTTTCAGTCAGTGCATAACACACGAAGAGGACGGACACCGCCCAGATACC
TCCCATTGCATTTTTATAGCTGCAAAGTAAACATAGTAAGTAAGTATATTTTCTAGGGCT
TTATGATCTATTAAGTCTTGTAGAATAGAATATTTAAAACTACTAAAGATGCTACAAATC
TAATTGATACCCATATATGGATAAAGGTAATTTAAAAAGCGCCGAGCTTCAGGCAACATA
GAGAATGCTAACACAGATTTATGCACAATCATCAGCCTACTTTAGATCTTTTTTCTACAC
TGTATTATACATCAAATATGATATTGCACGGTAGTAGCTTTTACCGTGAAAGGACCTTCG
TACTGACAACTCCAGTTTCACGTTCCTCTTGCTTAATAAGAACAGATTTTCCCTGCTTTG
TTTTACTTGAACTATCCTGGCTCTTTTGCGGAGCACCATCAGCTATTACTACGGCCCCAT
TTTCAGTGTGTTTTGTGTCGTCCTGTGATTTGCTTTCGTCTTGTTTCTCTTCCGTTTGTT
CCTCCATCTTTCCAGCATTTTCCATAAGTTTTTTGAACTGCTCCCCGGTGTTACTAAGTT
CATCAAATGTACCCTCCTCTTTAACTACTCCATCATGGATTAACAGTATTTTATCCACGT
ATGGCAGAAAATGCAGCTGATTAGTAACGAGGACCCGAGTTTTGTGCCGTAGCTCTTCTT
TGATACATTTATCAAATACCTGCATTCATAAAGGGTAATTAATAAGATTATGCAGTAGTA
TTAACACTGAGAAAAGTCCATGGATGAATATGTACACAAGCACCAAAAACATGGCTCTGA
TACATGCCAAAACAATGCCATAAAACCTCCCCGATGGTTTTAATTAATTAAGTTCTATAC
ACTGTAAAGTGGGGAGTTCAAAGAACTACATGAACAGTGTATCAATTACATATTATCAAG
CGAGGATGTTATATCTTGGATATCTGTTGAAATCAAGTTAAAAATTTGCACAACATTGCA
CATTTCTTGAACTGTTTCTGACGAAAGAACGTTAATGTTTAAAACGCCCAATACTGTCTT
TTTGCCACCTAGGTATGAAGAGGTCAAGACAAAAGGATGACTAATATCAACCAAAGAAAC
ACCATCACCAACTCCTAATCATCGATTATGTGAGTACACAAAGATAAAAAAAAATAGAAA
GCATCAGAAAGGAAGCAAGACGAATGCACCTGTCGACCAACATGGGCATCTAATGCACTC
AGTGGATCATCAAATAGGTAAACATCTGAATCAGAATAAACAGCTCTTGCCATTGAAACT
CTTTGCTTTTGCCCCCCACTAATATTCACTCCCCTTTCTCCAATCTCTGTGAGATCACCA
CCCTGAAACAAGGACAAGAAAATACATTCTTTGTCAGTTGGTAGGTGAAAGAAACAAAGC
AGACTGTACAAAAGCACAACTTGAATATAACCAGCCCAAATGAAAAACTAGAAACTTGTT
CACTGGCAAGGTCACTTTGTCAAATGACAGCAAGATTTTCCAAAATTTCAAACTTTTATT
TTCGTAAAGTGGGCATAGTTGGAACTTGAACTTACTGGGAGCAGGTCAAGGTCATGTCGT
AATGCAGTAGCATCTATTGCTCTCCCGTAGCGTGGAGGTTGGAATGGAGACCCAAACAAT
ATGTTATCCCGGACCTGTAGATATCACAGATATTTCTCCGTACAGTCATAAAGGGTTCGA
TTAGCAGAATGATAGCAATAACGATACTGTATCTTACGGTAGCATTGAAGATCCAAGAAA
CTTGAGGAACATAAGCCACAGAACCACGAATGACCACCGAGGTATCTGATCCTGATACTG
GTGGTATTTCACCAAGCATTGCAGAAATAAGAGAAGTCTTCCCCTCCCCAGTGCTTCCTA
CTATTGCAACTAAACTGCCGACAGGCACGTCCAGATTGACATTTGATAGTGTTGGTCGCT
CGGCCTGTCAATGTTTGAAAATTTAGTTCTTAAGCAACGCCATAAAATAAGAGAACTGGC
GAAATGGAAATATCTTCATATTCACTAATGGGGAATAGCACCCTTAAAATAACCACCAAT
TCGTTATGAACTAAAATACATCTTCGCCTATTCATTAATTAGCTGCTCCTTTGCAGTTGT
CATTCCCATTAACAAAGCATGCTAAGCTGCTAGACTATGAATATTCTATTCCGGTGTCAA
GCTGTGTGAATGTTTTCCTGTAAGCAATATCTGGGCCACAGAATCAGAAGACTAGTGTTC
AATAGTAAGGGCATGTTTGGTTGCCATCCACACTTTGCCACACTTGTGTGCCACAAGTGT
GGAATGCCACAGTTTTTGTGGTGGCCAAATTGGTCGCCACACTTGTGGCAGAAGTTGGCT
AGCAACTGAGTCTATGACAAGTGGGGTATGTGACTGAAAAAGTGTGGCATGCCACAAGTG
TGGCTGCAACCAAACATTTGCCTCAATTTGCCACACTTGTGGCACAAAATTATAACTTCA
TTGACAAGCAAACAAACTCATGTGGACCTAATATACCTGCAATTCCCATGAAAAGTTTCC
GTTCTTGATAGAAATGGCTGGAAGCTGAGGATCAATAGGTGGATTTGGCAGAAGTATTCT
CTCATCAGCCAAAAGGAGATCCTCCAGTCGTTTCAGTGAAACCTTACAGTTAACAACCTG
TTGAATTTAAAAGAAAACAAGTAGTAAGCCAACCAGACAAAAGAATTGCTGGTGTGTGTG
TGTGTGTGGTGTGT