morexGenes - Barley RNA-seq Database

Contig contig_40672
Source Contig contig_40672
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_40672 (7067 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location
Predicted Genes from contig_40672

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_56258	2	3206 bp	MLOC_56258.2	Available	Available	LOC_Os10g21000.1, FRAME:+1, EVALUE:0.0, 13110.m01733 protein nucleoside-triphosphatase, putative, expressed
MLOC_56259	1	1080 bp	MLOC_56259.1	Available	Available	None
CDS Structure of MLOC_56258

CDS Structure of MLOC_56259

Contig Sequence (7067 bp)

>contig_40672 7067 assembly3_WGSMorex_rbca.fasta
TACCCCGCCTAGCCTGTCCACCAAATCCGCCGCTGCGGCCGACCCCGCCGGCGAGGCGAT
ACAGTCCGCCGGCCGCCGGACCGGCTAGCTCCTGCGCCGCGGGAGGACTCCTCCTCCCCG
CCGCCGCGTCCGATCCGGCCGCGACCCGCTGCTTCCGTCCTAGATCTTACTGGCCTCCGT
CTCCTCTCCGTCCCCTGTCCGTCTCGATCCCCAAATCCATCTCCCCGCGCGCCAGTCCAA
TCTCCGATCCGTTCCGCTGCTACTTAACTGGCGTGGAGCGGATAAGATCCGTCCCCGTCC
GGACGCGGTTCCTGTCGCTGGTAAGGAAGCCCTATCTCCGCTTTCCTTTCTCTTTTGTGT
ATAAAGTTTTGTCTCGGGTCTTTCCTTTACTATCCAAAAAAACAGATCTTTCTTCTCCAA
GGTAGATCGCAGTTGGACTCGTTATAGGACTGCACAAGGTTCCCTAAGCTAATGCTAGTT
GTATAAGTTCGCTTCAATCAAACTGGTGGTTCGGCCGAAACCCCCGTGCCACGGGTTAGG
TTTGACATTGGTAGACGGCTTTGTGCTTGGGGTCCTTCGCTGTGGAGTCGCTTGAAAGTT
GGCGTCTTTCTGCGGTTCTATGATCACCGATCAGTCCGTGGGTAATAGATACTGCTGTGT
GTTCATAGGTGAAAGTCTCGACTGAACGGCAGTTTTGTTGGTGTTAGTACTCCTTTGTGT
AGCATAGGGAGTTGTTTGGAGACACTGCTGTTGCTCATCGATCAGCGGTGCCATTTTTCA
GAATAATGGTATTGCTCCAAGGTACTGTAGAGTATCATCTTCATTTAGCCTAGTGTTATC
TTAGCTGCAAGTCTTTTGTTTTGCACTGTACCGGGTATGAGAACGTCATTTACTAATTTC
TGAATGTCCACTGTGTTGGCGTCCTTCAAATTGTAGTTTTATCTATTGGATGTTGGCGTG
TTAGTAAATTTCTAATATACATAATTTGTTGCAGGTACAGGCTGTGCAAAGGTTATGTTG
GATTGATTTACCGTCTGGCCAGTTATGCTGCCCACTTAATACTTATGGTTCTGTTTGCCG
AAATCATTCCTTACCGCTCGTTCTCGGTGATATCTTCAAATAATTTCCACCTTGACTACA
AAAGAAGCAGCTATGCGGCTTTCTTCTTCTCTTATAGATCTGCCAACTTTTTCTAGAATT
GACACTTTAGAAAGGGGCTCTAGCATTGGTGGTGATGTGAGTTCAGGGCGTGCGAAGCCT
GTCCGCACACTTCAAAGAGAAGGTCCTGTAGCAAGCTTTTCAAAAGAGAGAACACCCCCA
TCATCGCCAACAAATCGAAAGAAATGGATGAGAACAGTTGGTTGGGCTGTTGCTCTGATC
CTATTGGTGTGCTTCATATATGCTTCTTTGAGATATTTCCATGTCTTCCTCTCAGAAGGT
AGCTCTGAATACTATGTGATTCTTGATTGTGGCAGCACTGGTACAAGAGTGTATGTTTAC
GAGTGGTCCATCAATCATAATGATGGAAATTCGTTTCCTATTGCTTTGAAACCTTTAGGA
AATGCTCCTAAGAAAAAATCTGGTAAATTAATTGGGCGTGCCTATCAACGAATGGAAACT
GAACCTGGGTTGAGCAAGCTTGTTCACAATGAAACTGGAATGAAGCAGGCAATAGAGCCC
CTACTCCAAATGGCTGAGCGGCAGATCCCTAGACGTGCACACAAGCACACTCCTGTTTTT
CTATATGCCACAGCTGGTGTCCGCAAGCTACCAGCTGCAGACTCAGAGTGGCTTATGGAT
AACGCTTGGGATGTTCTGAAGAATTCTTCATTTTCTTGTAGTAGAGACAGAGTTAAGATC
ATCACTGGCATGGAGGAAGCTTATTATGGATGGGTAGCTCTTAACCACCACCTGAACATG
CTTGGTACCTCATCTTCTGCTTCTGAAATGACTTATGGTTCACTTGATTTAGGCGGATCA
TCATTACAGGTGACATTTGAGACTGACAAAGCCGTCCAAGGTGACACAGGCGTTGGTCTG
ACTATTGGTTCTGTCAATCATCAACTTAGTGCTTATTCTCTTTCTGGTTATGGATTAAAT
GATGCATTTGACAAATCTGTGGCACATCTGGTGAAGATGCTTGGAGGAACAGCTGGTAAT
GGCAAAGTTCAGGTCAAACATCCTTGTCTACAAACTGGCTACAGGGAAGATTATGTTTGT
TCTTACTGCCACCCACTCAAACAGGATGGAAGTCCCAGTGTTTCAGGGAAGACAACAGGA
AAAGAGAAGCAGGGAACAGCTGTTGAACTGATCGGGGCGCCTCAATGGAAAGAATGTAGT
GATCTTGCAAAAGTAACAGTGAATCTTTCAGAGTGGTCCAATTCAAGTTCTGGACTTGAT
TGTAACCTTCAACCTTGTGCTCTTGCTAATAGCTTTCCGCAGCCACATGGGCAGTTCTAC
GCAATGTCTGGTTTCTATGTGGTTTTCAAATTTTTCAATTTGACTCCTGATGCTACTCTC
GTTGATGTTCTAAAAAGAGGTCAGGAATTTTGTGAAAAACCATGGGATGTTGCAAGGAGT
AGTGTTCCACCACAGCCTTTCATTGAGCAGTATTGCTTCAGGTCTCCTTATATTACATCA
CTTCTGAGAGAGGGGCTGCAGATAAAAGATAACCAAGTGATAATTGGTTCAGGTAGTATC
ACTTGGACTCTTGGTGTTGCTTTGCTAGAGGCTGGGCAGGCACTGTCGAAGATGGATATT
CAAGGATACATTTTACTACACCGGGAGATAAACCCAAATATTCTTATTGTATTGTTTCTG
ATTTCAATCGTGTTGGTCATATGTGCAATATTGTGCGTTAGCAATTCCATCCCAAGGTCA
TTCCGCAAATCCTATTTGCCGCTTTTTAGGCCGAACAACGGAGGTAGTTCTGCGCTTGGT
ATGGGATCGCCATTCAGATTCCATTTATGGAGACATATTAATTCAGGTATGTGCTTAAAT
TTGTTTTTGTATTGAGCTTTCATCTTGTGTTTATTCCTGTATTGTGCAAAGGCTGCAATG
CTAGTACTTAATTTGGAATGTCAAATTTGTTACACCACTTAAGCTACTAAGAGTGCTTCT
AAGAAACATCATCACATAGAAATCTTGCATGTTGGAACACATAGGTTCTTTTTTACTTTA
CTTCATTCAATATGAGAGTTCTTGCTATATTTGACTAAATTCTTGTGATGAGACATCAAT
GAGTCATTCTACCTACTATAGCACTGTAATTTTGTAGCGCTGTTATATCAAAATCAGTAA
TCTTGAATGAAGATATTTGCTGTATCACATATAATCAAACAATGGTGCAAAATTCTGTTT
GATTGTTACACTCTTTGCTTTATTCTTAAGAAAGATATTAAACTTTTTGTGTTTGCTTCA
CTTTAATTTCTACTCTGCACAGGTGATGGAAGAACAAAGACACCATTGAGCCCTACTGTT
GCTGGGTCAGAACCCCATCCATTCAGCATGACACATGGATTAGGCGGCAGCAGCGTCCAG
CTTATGGAATCTTCCAGGCAATCGTTGGGTGTATATCATAGCTATTCAGTTGGGAGCTTG
GGTCAGATGCAGTTTTCTAGCGGAAGAGGTCAGACAACACTTCAGAGCCGGAGATCCCAG
TCGAGAGAAGATCTCACTTCTTCATTAGCTGATCTTCATGTTCAAAAGGTGTAGAGCATT
ACATTTCAGGATGACATGACTAGTATGTGATCCCATGCCATAACAAACTCCATGTAAATA
ATAGCGCTCCCGTCTGCACGATTTCTTCTTCTCTAGCCAGAAGTCAATTTTGTCGGTGCA
CTGACAATTCAAAGGTTTAGGATTCACGAAATTTAAAGTATATGACTTGGTGCCTCATGG
ACATGATACATCCATCCCTTGCAATGTACTGGTACCATTCATGCGATAGAATCATGCCAT
ACAAAAAGATGACCTTGCAAGCAGCTCGGTGTTGTACCAGAAGAAATGTTACATGGTTTG
CTGATGCGGTTGGCCATGGCCTTGGAAGGTTACCAGCTCAGCTCTGTAGCCCCAAACGTG
AAGGCTACCAGATGATGATGATATCACTGCATCCAGCCAGGATGTATACTCTTCAAAGGT
TCTTAACTATTATTTTCGTTTTACACATAATAAGATAGCTGTGTTCTCGTGTACTATCAT
TGATGTATCATCACGCCAGCCTTCTCTTCTTTTCTTGTAACCATTTGGTTCATATATACT
TAATGCAATCTGGGATGTCATTTGGAAATTGAGATCACCGACCAGTAACTGCATTGCCCC
TTATTTTCATGTGGTCCTTATATGAATCTGTTTTGGTTACAAGATTTTTCGTCTGTGCAA
CTTGTTTCTCTTTGTCTTGTCTATGAGCATCTCATCTGTCCGACTTGTCTCTATTCACAT
GCTCAAATTAACACTGTCGGGGTGCATGTTGATACAGATAGAAAATACCTTCTACCTGTA
TACATGCAAGGACCTTCAACTAGGATGTGATGTAGTAACATAAATTTCTCCTTATGTCTG
CATCTGATTTTGATGCATATACAAGTTTCATTTTTCTGAGATTCCTAAATGCTAGAGGTC
CTTGTCACTGGGACTTGTATCAATGCAGTATATGTCTACAAGTTGGACGTTTGATTTCTA
CAAAAGTCAATTTTTTAGGCCATCAGATTAAGATCCAGCAATCATCCTTCCTTCTTCATC
CACCCGCGTTCCTCCTCCCACAAAATTGACTTACCTAAATTGCAAATTCAGTCAATTTAC
ATATAGCTATTGTAAGTAACACAATTGTCCCTCTCTCGATTACCTGCGGCGCCGGCGTTT
CTCCGGTCGATAAAGCTGACCTCTTGAGCTGGGAATGAAATGATTATTAGCAGAGATGCA
GCCTGTGCGTGGAAATTAAGCTAATGCCCGCACGAGATAGATTGCACGCTTGCTAGTTTA
GGGTTAAATTTGCGTGCTATCTATGGGCGGAGACTTGACTTGGACTGGGTGAAGATGTTG
ATGAGATGAGATGAGGTGAGATGGGAGGCTGGTACGTGGTGGCTTTTGTTATGCTTTGCG
CTTGCTTCGTGGTACGAAAGAAACCACCATATTCTTTTCATTTTTCTGCCTTTGGGAATT
TCGTGACATGAGTTGTCCCTTAAACAAAGCAGAGTGGTTTTGCCCTCGCAGCACACAGGA
TTTGCAGAAAGGGGGGCGGCTTTTGCAGGGCAGCACGCTCATACTCATCACGCACTGCTC
AATGAAGCAACCCACAAAAATGGAGAGTGCAGAGGGTAAGCAAGAACGCGATAGAAGCTG
AAGCAGGATTAATCTTGTCTTGGTAGATAGTGATTTGACAAGAACGGAACCAAAAGTAGA
TACGTACAAGCAAGAAGCAAGCGACACGGACGGACCGACCCATAATACTTGCCGATTCAG
TGGGGTAGGGCCCCTCATCCCTCAATTACCAATCACAATCTTACACATCAGTTTTAACGT
AAAATCTTTACGTAAGCCTTAAGCCTTTACAGGTGTAGGCCGATCCATCCATCCTTTTAC
AGTACCGCACACGCGTACACAATCAAAGACAAGCAGTTGAGTTGAAGCATACGACGTTCC
ACCAGACCAGCTCCAGGTTGATGAAGACGCAGCAGGCGGCAACATGTCAGGAGGTTGGCA
GTTTAAAACAGTCGCAACCTCCCGAGATGCCATCAGCTGAGGCTTGACCACCACCAGCAG
CAGCAGGAAGAAGATGGCCGAGACCCAGCTGAAGACGCAGAAACTAGGGATGGGATTGGG
ATGGACCAGTTGCTTGTTCAAATAGAAGGCAACCGAATCCGTCCACGGCCGACGCGACGG
GGAACTAACTCCAGATCTAGCTCTAGGGATTGCAGGTAGATTATTTAGCTCCGTCCTCTG
CCGCGCGCACTAAAACGAGCGCAGAGTAAGCAGCAGAGGACCCTTAACATCGACCGAGCG
GCAACAACTCCGGTTCACTTGGCGTCGGCCGAGATACCGCCGGCGCCGTTCTTGTCGGCG
CGGACGAGCCCCGCGGCCATGTTGGCGACCGCGGCGACCATGTCCTTGACGATCTTCTCC
TTCACCTGGCCACGCCGTGGAGGCGGCGCGGCCCCCCTCGGCGCCCTGCTGCCGCCGCCG
CCGGCGCGGGCATCGCCGGAGCTTGAGCCTGGTAGCCCTTGGTGGCCATTCTTCCGGCGA
GGGGAGAAGAGGAGGGCAGTGCTGGCTTGGCTTGGACGGCAAGAGAGTACTAGCGCTGCT
GGTGTTGTGGGTGATGCTAGCAGAACATTGGAGATGGTGTGGATGGGGAGGCCAATCCGC
ACCACGGGAAAAGGCGCGTCCACGTCTGGCCAGCTACGTACCTAAGCATATCGATTTTGT
CCGTTTTACGTTTGGGGTCGATGTCCACACTACGGACACGTACAACCGGTTGATGTATTG
TGGAACGCAGAAGAAACAAGGCATACATGCCAGGTCGGCGCGCGGCGGCGTTGGAGAACG
ATCTGGGGCGACACGTGCCGGACGAGTCTCGAGGCGGGAGGAGGTGCGACGACGCGTGCG
AGACGAGTCCAGAAGGAAGGAAAAAGTCCATTTTAAACCGTAAACTCGTAGTGGTTGACG
AAATGAACCCCAAACTCAAAATCCCTATCGATTGCATCCTAAACTATGCAATCCCCGGTC
TAAATCGAACCCTGGAACTGTTTGTCAAACCGGGATTGCAAAGGATGGTCGGGATTGTTT
TATTTCAGAGGTGAGGGTGAGATATCTGAGGCGTCGGAGGAGCAGATACCGGTGTGTGTT
TTTCCGTCGTGCGTCCATGCATGCAGGGCTCGATGACGGCACTGAGATACACCACCCGCG
CGACCAAGATCGTCGGGAGCACGAGCAAGAGCGGGAGCGCGAGCACGGGCACGACAGGAG
AAGCGAGGAGCGTGAGCGCGGCAGGAGGAGCGAGGAGCGCGAGCAGGAGCAGGGAGGACA
GGAGGAGGAGCAGGGCCACGGCGGCGAGCAGGAGAAATCGAGGGGCT