Contig Data
morexGenes
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Map Locations of contig_40633 (8459 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_40633

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_56211 1 2147 bp MLOC_56211.1 Available Available LOC_Os04g19800.1, FRAME:+3, EVALUE:1e-77, 13104.m01820 protein F-box domain containing protein, expressed
MLOC_56212 1 441 bp MLOC_56212.1 Available Available None
MLOC_56214 1 774 bp MLOC_56214.1 Available Available LOC_Os04g56930.2, FRAME:-1, EVALUE:1e-104, 13104.m11855 protein glycosyl hydrolases, putative, expressed
MLOC_56213 1 539 bp MLOC_56213.1 Available Available None





CDS Structure of MLOC_56211






CDS Structure of MLOC_56212






CDS Structure of MLOC_56214






CDS Structure of MLOC_56213






Contig Sequence (8459 bp)

>contig_40633 8459 assembly3_WGSMorex_rbca.fasta
TAAATTTCACATGTTATTGCATTTTGATGAATGTTTCATTGCATTTTGGGCGCTGCTGCA
GCGGCGCGCGCTGCATTTTTACGCGCTGCGGGAGCGGAGCGCGCGCTGCATTTTATAGCT
ACTGCTGGAGCCAGCGCTGCGCGACGCATCAAACCAGGCGACCAGCGCGCAGCAAACTAA
GCGCGCGCCTCTTGGAGATGCTCTAAGCGCAGCACTAAAATCGGGCGTATGTTGGAGCTG
CTCTAATCACAGTTTTTTTTTTCAGGGTTTAGGTGCGTGGACCCTAGTTTCGTGACCGAC
TACAAACAGACTATGATCTCCAGCTACGGAGCAGATTACGATTCGGTTAGGAGGTCGAGG
AGGGTTCGGAGGCGGCGTCAGAACTTGGAAGCGTCACATAAAAACGAACTGGCCGCTTCT
GGGTTTTCTTGAACTCGACGACGACCATGGCGACGTCGCACAGCGAGGGTGGAGACAGGC
TGAGCGCTCTCCCCGACAAAGCGCTGCAGCGCGTCCTCTGCTACCTCCGGACCGACGAGG
CCGCGCGCACGAGCGCGCTCTCCCGGCGATGGCGCGGCGTCCACGAGGCCGTCCCCGTCA
TCGACCTCGTCGACACCAAGACGGGCGAGCGGGGCATCCACAGACTCAAGGTCTGCTTCG
ACTACAAGGTGGCGAGCGCCATCATCGGCAAGGGAGCGGAGACGCCGATCCGCGTCTTCC
GTCTCAGCCGCGTCTTAAGCCCCATGCGCAACCAGTGGATCGCCTCCGCCGTCACCTCCG
GCGTCGAGGACCTCGACGTCGAGATCAGGCACGGTGGTGGTGGGTTCTGGGAACCCCCGA
AGCAGCCGCTCCCGCTCTGCCCGTTACGCGGGTCACCAGAGGCCATGGCAGAATTCGAGC
AAGGCGACAGCAAGACGTACGTCAAGACTCAGCGCCTCATCTTCCGCTGCCGCACGCTCC
GCCGCCTGCGCCTAGTGAGCTGGAAGCTCGACCTGCCGGGGAGCGTGGACATGGCGGCGC
TGGAGACGCTCTGCCTCGGGAGGATCGTGGACGGAGGTGGGATGCTGCAGCGGCTGCTCT
CCAGCTGCCCGCGCCTCGCCAGCCTGACGCTGGAGGAGTGCCCGAGCATCAAGGAGATCA
CGGTGACCAGCCCCTGCCTGCGCAGCTTCGCCATGATCTGCTGCCACAATGCCACCGGCG
TCGAGCTGCACACCACCTGCCTGAAATCGCTGCACTACAGAGGCAGCCTTCCTCCTCGTG
GGTCGTCCTTCATCGCGGTCCCAAACTTCTTGGCAGTCGCGGCGCTGAGGATTGAAATCT
GCGAAGACCTCTCCAGCAAAGGTCCGTCGGAGGTTGCTCCGGTCACGACGCTCATCAGCC
GGTGCGAACGCTTGAGATATCTGCACCTTTCCTTGCACCCATCAATGGCCTACTACAGCA
GCCTGCTCACGAGCGTCTTGCGCGGACTGGACAACCTCACGGAGCTGAGCCTCCAGGGCA
GATTGCTCACTGATCATGCCGTCCGGTCGGTCGTCGCCTTGCTTCTCAACGCCAAGAACC
TGCAAGTGCTGTCGCTGTTGCTTCTGGGTCCAAATGACAAGATGGCAAACGATTTGCCTG
ATGCTGAATCAGAGACTGGTCTGTCGGACACCTATTTAGATGGCGAATCAGGTACCTATC
CAGATGGCGGAACGGATGCCAATATGGATGACGAAACATATATCGATCAAGATGACGAGT
CAGGGTCTGATACAGATGACGAGTCAGGGACTGATACAGATGCCGAGTCAGGGACTGATA
CAGATACTGATAGAGATGCCGAATCAGGGACTGATACAGATGGCAATATAGATGATAAAA
CATATACCGATCAAGATGCCGAGTCAGGGACTGATACAGATGCCGAGTCAGGGACGGATA
CAGATACTGATACAGATGCCGAATCAGGGACTGATACAGAGACTGATCCAGATGCCGAAA
CAGAGGCTGATCCAGATGCCGAAACGGAGACTGATCCAGATACCGAGCCAGATGGCAAAC
TAGATATGGAGCCAAAGGACGATGCCATCAACAATGGCATCAAGTACAGTACCTGGATAC
CCCCGAGTCTGTGGCGTACGAATGTCAGATGCTTGGATCGCAGTCTAAGAAGAATCAACA
TTGTCAACTACAAAGGACTGCCTCTCGAAAAGATGCTTGCAAAGTTTCTGCTTTCCAAGG
CTGCAGTGTTGGAGGAATTCTCAGTTACGTTAGCAGCTGGGCTTTATCCAGAGGATGAAA
TCGCGAAGGAGGTAACATCCTGGCTATGTATAGGCTGTACCAGAATAACGTGCATCTGTT
CAAGGAAAATGAAAAGGAGTAACTTGTGACTAGCCTGCAACAAATTCAAAAGTTGCCTGT
GCTTGTAAAATGTAAAACTAGAAGAGAAATAATTTTATTTATTTTGCCATTTTTTACTAA
CACTAGATATCGTAGATATCATCATTTTCTTAAATATTTCTCTGTTAAATTTGTGGCAGC
GTGCATCACTCTGCAGATGCCGGAGGAATATAATCTTTTCAGGAATAATCTCTGTTAAAT
TTACATTATTTCTGAGTGTACGATCGAACACCATAACTCAACTAGGACCTGATGAGCAAC
TAACATCAGACACAGCCTGTTCCTATGTTGCAGAAGGCGGATAATTCAAGAACAAAGAAA
GAAAATAACACAATGCAGCAATCAGAAGGCAGGTAACTCTACATACAAGAAAGCAGATGG
CACAACACAACTGATAGAGAAAAAATACATCTGACAAAGTTAGGAAAACAGTTCTACAAG
AGTAGCAGGAGGATTGAGAAAACTCTCTATGCATTATTAAGCTGGTAAGCAAATGGCTAA
TTATGCAGACAGAAGATTATTTACAGCTAGCGTAGCTGCTTGAAAACCTCTAGGGTATGC
AGATAGCATATTTAATGTTGCAAGATCGGCACTATGACTATTCAAGAAACCTTGGTAAAT
TTAGCAAGAACATTCACCTACTGTTGAAATCAGTGCCCGAAAGCATCAGAAGGGATAGGA
GTAAAAGCAGACAAACTGTTATGATAGAGAATAAGAGGGAATTGACCACACTTTGATTCA
GCCATAGGCAGAGAATATAAGTACAGGTTGGAGCCACTCCTAGCCTAGTGGGGATCATGG
GTTGCCCACTACTCTCGGACATGTACATGGGTACAAACTGCAGCACGCACACCTACTGTA
ACATAGAGCATCATCTATACAAGAGCTCATACAGTACAGATACATTATACACTAATACAA
ACCGAACAGAACAATGAAAATCCAACATATACTATGACATGTGATGAAATATTGAATGAG
CAGGACATGCAGGGTTCAGAACACTAACTCGAAGGGCATTCTCCCACCCAGAAGGAAGCT
CCTCTGAAAATTATGCTATGGCCTCAGCAGCCGTCTTGTGGCAATCATTGTTTATAAGGC
GGTAAGGCGACCTAAGGCGAGCACCACCCGCCTTAGCGCCTAGGCGACGCCTAAGCNNCT
AAGGCGGGCATATTTGTAAGGCGCTGCCAGGGCGCCTTATCGCCTAAGCGTCTAAGGCAG
GACGCTTTCAAAACAATGGTGGCAATTATCTGCATAAGAGTATACTCTGCAAACTGTCAT
TCCATTCGGCTTCAAGAGATGCACGAGAAACAAGGTTTAACCATATCCTATTAATGTGAA
ATAATTTCGAATTTAGATTAGCAATGTTTATTTGGAACAAAAGTCAGGCCGAGTGCAGAA
AAAAATCAATAGCTTATTCAAAGCTGAGAATAGCATTAACATTCACCAGATAGTACTATT
TGTCTTGCCAAGGCCATTTATTATCAACACTCACTATTTCCATACATGTACCATTTACTT
CCCTCTGTACCTAAATAATTATAGTTGGGGATAATTATTATTTAGGAACGGAGGAAGTAC
AGAATTGTAGAGTGAAAATAAAAAATATGTGTTCTTAGACATAATCTGCAAAATAACAAG
AAAGCATGGATATAGTTTAAGAAAAAAGAAATAACAGTGTTGTTTTTTCTATCTTTGTTT
AGTTGTATTATTATTTGTTATAATGAAAACATGGAAGTGTTCTCTTATTTGTACACTTCA
TAGTTCATACTGATTTACTGAGCCCAACGGACACCAGAATACAAAAAAAAGGGGTGTGTT
GCTGCCCTTTGTCAGAACCTAACAGACCAGCTATATGCAACGATGACTAAATACTTGTTA
GCACACTACTGGTAGTGAATTTTGAAGGATCGGCATACTGTAAATTACATAATTTGTTTG
ATCATGTAGCAAACAAATTCGAGACTTCAGAGTATAAGAGTGCTACATACCGCACTGTCC
GTCGTGTTCCCAGCATTCTCACCCGGTAGAAATTGTTCTGTGGACATGGTGATTCAACAG
CGGCCCTGACAATCGGTCAGACAACACACTCATTCAGATGTAATGAAACATCCCCTCAAA
TAAACTGGACATGCCGATATATCATGTGGAAAAGAAAAAAAGGCATCGAATATGCAGAAC
CAGAGGATGAAATTATGTGTCTAGTAGGAGTATGTATTATAGGCTTCCCACCTGAATGGT
TCTGTGAGATTGGCAAGTTAGGGAATCAACGCCACCATTGAACTTCGTCCTTTCGAAAAT
TTTCAATTTGCGACCCCAGAACACATTGCAGTATGTATATTCAGACTTGGCTTTGCAACA
AAATACTTTAGCACCTCCCCAAAAAAAGCACAAAATCCGCCGAAGCTGCGCATACCGGAG
ACCGAACAGGAAGGGCTGCTGGCCAGGGTTGAACCGAATGACTCTGCCGAAGGGGGAGGT
GGCACGGGGAGGCCGGAGTTGGCCTTCACCGCGGCGGCCTGCCCACGGCCAGGAACGGCG
CGCATTAATTCTGTTCCGTCCAGGGACTGCTCGACTAGCTCCGCGGCTGCCGCCGGATCT
ACTGGCGGCGAGACGGGCACGTGTGGATGGGCGACGCGGGAGTTGAAGGCCACCGCCGGA
AGCGGCAGCGGCAGCGGGCCGCCGGGGAACCACCTAGCAGGCGAGGGAGAGAGTTCTGCG
TCGCGGACTCGCGGTGGCTTTGCGAGTGTCGTGCGCAGTGCTGCAACCACCTCGTCGACA
AGGAAAAAAACAACAACAAAAATCTAGTACCAATCAAATGCCGTTTTTTTTTTCAGGAAT
CAAATGTTCTGTTCTTGAGCTAAGCAGTGGACGGTTACGTTGCCGCCCGATGTGTCATGA
TGGGAGAAGGGCCCAAAGTAAACATGATCATCAACAATCCGGTCCGATAACTCAGCTTGG
AGAAAAACATAAAGTAGGAAGGGGGCAAAGTAAACATGATCATGGACAATCCGGTCCGAT
AACTCGGCTTGAAGAAAAAGATGATGGAAGAAGGAGGCAAAGTAAACATGATCATGGACA
GCCCAATTCAATAACTCGGCTTGGAGAAATGATGAAAGAAGGAGGCAAAGTAAACATGAT
TATGGACAGCGCGGTTCGATAACTCGGCTTGGAGAAAAACATGATGAAAAGAGGATGCAA
AGTAAACATGATCATGGACAACCCGGCCCGATAACTCGGCTTGGAGAAAAAGGACATCAG
GCTTAATTTTTGTTTGGGCCGGGTTTGGTCTCCATTTTGCAGCCCAGAAGTGTATTCGGG
TCGGGCTTACACGTGATTGTTTCACAAAACAGCGTTCGGGCCAGGATTTTGGGATCCAAA
TTTGTTTTTGAACCGGGCTCGGACTTGGGAGCCACACAAGTCGAATTGCGATGCGGTATA
GAAAAGGGACCTGCCAGAAACGTCTAATCTTATTTGATTATACGGTGGCTGATCCCGATG
AATCCGAACAAATTAATCTAATTTGTAGCAGTCGTCCTTACTTTATACCTGCCAAAAATG
TATTTCATTTAGGGCTTAACTTCCTAGCCGGTTTCTTAACTAGTAAAAACAATGTTGTTT
TAGGCCGTACAGACTGTAGCAGCAGAAACAGTGTTGAAAACAGGAGGCGCGTTAGAAACA
ATGCATCTAAAAAAAAATGAGATGCAATAGAAACACACGATACAACATAAAACCGCTTGC
TTTAATGGAATCTCGCGTTTGATTTACTAAATCGTCCTTAATCGTTACTCACTCCAACAT
ATTTTTAATTGTTTCATTTACACAAAGTAGCATAAATCATCACAAATTACCATGAAAGGC
TTAGGGTCAGTTCTTTTGCTGGCTTTTAGTAAGCTGGAATAAGTTACCCCTTACCCAACT
TATTCTAAAAGCCAAATTAAATTTACTTTTCTAGATGTCTACTAATTAAGACTTGACTTG
TAGACTTTTAAAAATATTTTTTTGATCGGGCTTTTAAAATAAATTGCATAGGGGGTAACT
TATTCTAGAAGCTTAAAAACACCAACAAAAAAACTGACCCTTAGCCACCTCCGCACCCTC
CTACAACCATAAGGCCGCTCCACTTACGTTCATCGCAACCAAGCTATATAACATCTTCAC
TGTTTACGGTTGCCGTCGCAAGCTCCCACGCCTCCAACTTCGACACCTTCAAGGCGCCAA
CACCATAGTTGAATGCGTACAACCGGCTGCTGCTTGTGGTCGCATGCTCCGGATACATGC
GAGCCGTCATGCACGTCCTCCCGCCATCGGCGAAGCTCTCCACAATGGTGTGATCGATCT
GTGTGTATACAATGTGTGTTAATGATATCGGCCTACTCCGAATGAAATGCATAAAATCAA
CCACAATCGCATACGGAATTGCAAAAAACCACCATATGACAAAATGCACCGAACACTATT
ATTAACGGTGGTGAAAAACACTAACAGTAAGTACTTGTAATTGATTTGATGGCGTCTCTA
GCTGTCCGACCCGTCCATTAGGCCGAGTTGGCAAAAAAAAAACTGCCACGAGTTTCTTTT
GTATATCATGATACCATTTTATTTATTTTGCATATCAAGACACTATTGTGGCGAAAGTGC
CCTTATGGTCCAGAACTCAAATGAGCTCGGCAAACAATAAAACAAAAAAAAATCAATAAA
ATCTGGAAAAAAAAATATGACCAACATTGACAAATTTCAAGTGCATGCAAAAAATTGGCA
TGAAATAACATTCCTATAAGGGGTGGCAAAAAAACAAAATCGATACTCTAAAAATGCGCA
TTTTTAGAGTATTGATTTTTTTTTTTTGCCACGCCTTATAGCGCATTATTAGAGTATCAT
TTTTTTGCTATGCTTTATAGTAATGTTATTTCATGCTGAATTTTTACACACACTTAAAAC
TTTTGTCAATGTTGGTAAAAAAAAATCAGATTTTTTATCTTACTGTTCGTCGAGCTCAAA
TGAGGTCGGGAGTAGAAACTCTGCGACCCTATTGTGGTGGTTCGCAACACTATTGTGGTG
ATTTTATGCATTTCACCTCTTGCTTGTACTCCCTCTGTTTCATAATGTAGTGTGTGTACT
TTTTTTTTGTAAGTCAAACATTATAAAATTTGACCATATTTTTAGAAAAAAAGGTACATC
TAGAATACCAAATGCACATCATGAGTCATGAGTTATATTTTCATAATATATATGTTTGGC
AGTGTAGATTTACATAATTTGCTCTATAAAGTTGGTCACAATTGACAAAGTTTAAATTTT
AAATAAATCTATAAGCACTATATTATGGAATTATGGAATGGAGGGAGTACCATGTTGTGG
GTATGCTCTGCATTGGTTTTTCAAGGTAGATGGGGTAAACTCACCAGTGTTCTGAGCGAC
AAGGTCTTGTCCTTCTCCAAGTCCACGTCCAGAAATGCCCCGTAGGATGGGATTTTTACC
CCTTCTGCTTTCCCAGATGACCTGTGCAATTTTCATGTTTGCAACAAGATGTTCAGAAAT
GGTGATCTTTTCTTTCTTGATTCACAAACTGTCGTGTTCTCTTCAAAAAGTGTCAAGGAT
ACTTACTTTGTGAGGTCGGTGCACATGAGGACCTTGTACTTGTCAGTGTGCCTGAACACC
CTGAAGAAGACGGCGGTGTGCTCCTTCAGGTCGCCGGAAGCCATGACCAGCAGCCCGAAC
GGGCCGACTCCGCCCGGCACTGACGCGCCCTTCTCGGCGGACAGCCCCGCCGGATCCTGC
AGCCACTTCGGGTCCAACGTCTCGGCATCCTCCAGGTTCGAGACCTCGAAGACCACCTGC
ACGTCCGCCTGCGAGCCCACGATGCCGGCGATCTCCTTCGTGCCGCCGGCCTCCACCTCC
GTCGCCCACTGCAGGCCGACCCGCTTCCTCCTCAGCGTCTCGATCTCTTCGACTGGCCAC
TGAACCAGCCGCTTCCCGTCGGCGTCCAGCCACATCGCCCTCGGGAACGCCTGGATGCCG
GCCCAGCCTCTGGCGACGCCGCCGCCGTCGGTCTCGTCGACCCACGCCCACAGCACGCG