morexGenes - Barley RNA-seq Database

Contig contig_40585
Source Contig contig_40585
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_40585 (7773 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_40585

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_56149	3	2140 bp	MLOC_56149.1	Available	Available	LOC_Os01g43130.1, FRAME:+3, EVALUE:0.0, 13101.m04447 protein DEAD/DEAH box helicase, putative, expressed
CDS Structure of MLOC_56149

Contig Sequence (7773 bp)

>contig_40585 7773 assembly3_WGSMorex_rbca.fasta
AGACATACTTTCGATCCTACACGTTGTCAATAACCTCTCGAAGCTAGTTTAGCGATTGCA
AAGGCGCAACGTCTTCATATGTTCGTAGTCGGATCATCAAAGTTGTCTTCCACAAAAAAG
ATAGATGCCATCGAAACATCGGAACACCTTCGCCTCTATCAATCACCATGCATGACCTTA
TAAAATGAAAATCGTTGGCACCAATTTGGTGATCCTACCGCCCTGTCAAGTCTACCGCAG
ATATATTTTTGGGAGTCATCATTGTCATGCTAAGTAAATGGGTTTCTAGCAAAACCACGA
TCATGTAGACCACAGTTCTCCAAAGCACTCCCAAAACTGTCCACCGCTTGTTGGGGCCGA
GCCGCCCCTCCCTCCTTCTTACAACGAACCAAATTCTCGTTGAAAACTATCACCATTAGC
CATGGTTTGTTGCCGTGAATTTTTAGAGTACGTAGCATCCCTCATATTCGGGGGTGGATC
CAGCTATATGGCAAGGTTTGACAGCTGCCATACCTAAAATTTGAGGGGAAATGCATATAT
TATACTGTATGTATGAAGATATGAGCCGAGTCAATGAATTTCTTGTTAGTTTCGTCAATT
TGGAAGAGGAGGTGACTCGCAGGGGCAGGCGACTCAGGGCCTGCAATGTATTTCGCCAGG
TAGTTGTGACGTTGGTATGTATTTCTGGCTCATTAGAGACCTACCTACGACTGAATGAGA
GAATTAAGAAATAGATGACTTGCATCACATAAGCCCATGGAATTTTGCTAAAAAGAAAGT
TGATTCGAGGCACACGACCGATCTGTTTCTTTCGAGCGCAGCTAGAGACCGGCGAGCGAG
GCAACGAGCAGGAACAACACATTTTTCTTTCGTGAAGCATGCCACAACTAGAAAGCATGC
CACGACCAGCTATGGTGTTGGACTATGAAGGGAGTCAAACATCTTCAAGTGCCCCTCCCC
TCCTCTATGTAAGAGCAACTTTAATGGGGCGATTCATTTTGTCCGCGGCCATCCGTTTGG
GTCTGCGCGAACAAAAGTGATAGCCCAACGCATGGACCCATTGCTAAAACGCGTCCGTGC
CGACCCATTTCCGTCTCAAATTTGGAAGTGAAATGGGTCAGCGCTGAGGCGAAGCGGACG
CACGTGCCCTCTCGGTGTTTGCATGTGGCTGCCCTTACTCACTTGTCACACAGCTACCCA
ACCAACTCTGCCTACTTATTTAATTCGCTGGCCCACCCCATCTACCTTTCTTCCATTATT
ATATTGCCACAGTGCTGCTGCCCACTTGCTTTCCGTTGGGTGCATGTGCTGACCCATTTA
AAAAAGCAAATATGGACAAACCGATGGACGAAAAGCGAACAAAATCGTCTCCATTTAGGT
CGGCCTGTTGGAATTGCTCTAATGTTTCTTCTTTTATTGTTTTCTCCCACCTCTCAATAA
AAAGACATGCAATCCTTGCATAGTTATGGAGAAAAGAGGAAAATCTTCAAGCGGCGCTTC
TGTTCATTCAATACGTGGAGTAAAGAGTAAATATGTTTTCCTCGGAGGGCCACAATGCAT
GTAATTGTCCGGTTGTGCGAAAGGGCAAACCCATAAATTGCCATCGCAAACATTGCCAAG
TGCGTATTCGTCTCTCCTCGTGTTTCCTAGGTCACCCTGTTTTGCTGCGTTGCGACCTCC
CTCCCACGTTGTCGCCCGTTCGTCGCCGCCGCCGCCGCCGCCGCCGCTAATATCGACATC
GCCGGCGTTCCCAGCGGTATCATGTCAGGCAATCGAGGGTACGCGGCAGCCCCGAAGCGG
CAGCGGAGGCGGCGCCCGAGGGACGCGGAGGACGGCTCCGCGTTCCCCAGGGCTGTCGCG
AGCCGGCCAAGAGGTGCCGACCAGGTCCGCGAGGTTGCCGTAGTGCCAGCGGAGGCCATG
GATATCGATGCGGGGACAAGTACCAATGCTGCCACAGGAGGCGTGGATGGATCGTACCTC
AGCGACACACGGTAATGGCATGCCCCTCATATTTGTTTCGATCGAATATGCGCATTAAAT
ATTTCCCCAACTGTACAAACCAAGTACCATATACAATAAGTAGTATATTTCTCGCGTGGT
AGGTATTTTCCAATTCGTATTGTTCCTCGGCTTTACGAGTTATGGGTATCATTCGGAGTT
AGCCTCGAATGACATGTAGTTGTAGTTCGTGACACTGTCGGCTAGCCTATCTGTGTTCAT
CAAATTATTCGGGGATTACATTGGCGTTACAAGCATTTTTCTGCTCTTTAAATTGTTATT
TTTATTGTATATTGCAGGTTTGATCAATGCGCTGTTTCTCCATTGTCACTGCAAGGAATC
AAAGATGCTGGGTATGAAAGGCTGACCCGCGTCCAGGAGGCTACTCTGCCGGTAATTCTT
CAAGGTCAGCAATAGCGCAAACTATTTTTTCTCCATGGTCTTGGGAAACCATGAAACTAA
TATTTCAATAATTTGTTGAGTGCAGGCAAAGATGTTCTTGCAAAAGCAAAGACTGGAACA
GGAAAAACCGTTGCATTTTTGGTATTCTTTCGCCTTCAGCACAACTAGTCAATTTGATGG
CTTTCACAGTCATGGGTTATTGCAGTGATGCTGCAGTGGGGATTAACCAATCTGACTGAC
TTTTAAATTCTTCTTGTTAGCTTCCAGCCATTGAACTTCTGTCTACATTACCCCATTCTA
CATCGATAAATTTGCTGGTGATGCTCCCTACTAGGGAGCTTGCAAACCAAGTGGCCGTTG
AAGCTAGGAAGCTTCTTAAGTATCACAACTCACTGGACGTGCAAGTTGTAATTGGTGGCA
CACGATTGCCTCAAGAGCAAAGAAGCATGCGATCCAAGCCATGTCAGGTCGTATCCATGA
ACTGTATCGCCTTCAGTTTGTTCATATCTGAATGCAATTTATGTGCTAATACATACTACT
GATCAAACAGATTCTTGTTGCTACACCTGGAAGGCTCATTGATCATCTTGAAAACACACC
TGGTTTTTCTACCCGGATTAAAGGTGTGAAGGTCCTTGTTCTTGATGAAGCTGACCGCCT
ATTGGATATGGGATTCAGAAGAGATATTGAGAAAATAATTGCTTTCATTCCTAAAGAACG
GCAAACACTGTTATTTTCTGCTACTGTTCCAGCAGAGGTATCTCTTTTTCTCATGTTACC
TCTTTGTACCTGAAGTACTGAAGCAATCTGATCTTTTGAATGTTTACTGTTAGGTCCGTG
AGATATCCCATTTAGCAATGCAGAAGGATTACAAGTTCATCAATACTGTTCAAGAGGGTG
ATGAGGAGACACATGCACAGGTTTAAATCTGTCATTTTCCTGAGTTGTTAGCTAGACTTT
TGAAGTAAGCTTGGCAGCTAGCTCACAGGTACCTTCCATTATTGCTCATGTATCAGGTAA
ATCAGATGTACATGGTTGCACCATTAGACCTCCACTTCTCTATATTATATGGTGTCTTGA
AGAAGCATGTTGCGGAAGATGTAGAATACAAAGTAAGTTATCTCACAAGTTTTTTGTTTT
TGTTTTGTTTACATCTTATGGATTTCCATCGTTGACATTACCCATGCAATTTTGCAGGTT
ATTATATTCTGCACTACAGCAATGGTCACCAAGCTTGTTGCTGAAATTCTCTCCCAGCTG
AAACTGAATATAAGAGAGATTCATTCCAGGAAGTCACAATCTGCTAGAACGAAGGTGTCA
GATGAATTTAGGAAGTCAAAGAGCTTGATATTAGTCAGTTCTGATGTTTCTGCCCGTGGT
GTTGATTATCCTGATGTCTCGCTTGTCATACAGGTTGGTTCTGTTGTCATACAGTTGATA
CAAAGAACTTGTTTAAGGTGTACATTCCTCGTAAATCCTATCTGCTTGTGCAGGTTGGGT
TGCCTTCTGATAGACAGCAGTATATACATAGACTTGGTCGTACCGGAAGGAAAGGCAAGG
AAGGGCAAGGCATTTTACTGTTGGCTCCCTGGGAAAAACATTTCCTTAGCAGCGTTAATG
ATCTGTCAATAACAGAGACGGTGGCACCTCCAGTGAACCCAAGCATTCACGCAGAAGTAA
GCAGTATATGATTTTATTACCTTCTCATCTAGTTCGCTTTTTAATCTGGTCAGTTTGGCT
GTCTGATCATGAAATCTCAAATCTATTTTCGGCCTGTAAAGCTAACGTATTTGGCCCCTA
TATTTTCTTGACTTGATAGGTGAAAGGTGCCATCAAGAGAGTAGAGATGAAGACGAAAGA
ATCGGCCTATCAAGCATGGTTAGGGTACTACAACTCAAACAAGACCATCAGCAGAGACAA
GTCAAGACTTGTCAAGCTTGCAGAGGAGTTCAGTCAGAGCATGGGGCTTGAAATTGTGCC
AGCCATACCCAAACTCATTCTTCGGAAGATGGGCCTTATAAATGTTCCTGGGCTGAGGTC
CTCGTGAATCTGATGTTTGAAGGTGAAGCAGGATTTGTTTGCTAGAGAAGGCACTATGTG
CATTTGTGCAACCGTACTGCTCTCAGCCTCGTAAACAGCAAGTAATTTGCCTGTGCTGTA
CGCCACCGAGCTTTTGATTGACAATAGGCAGGTTCCTGATATAACATGTTCTCAGGTGTG
TTATTTCTGAACATTATCCAGTGCTGGTCCTGAGCTACTTTTAAGAAGGAAAGAGAAAGG
TGTGTACTTGGCTATTTAGTGGATGGATGGCAATATATCATACTCACCTTGCTACATTAT
TCATCAACTTGTATCATTTATGCTACTACTATTCTTATGGAATCGGAATTCTGAATTATG
TTGTCATTATTCATTGCCAGCTTATACTGCTTCCTTTAATAACTAGGTTTTGCCTCACTG
TTGTATTCTTCTTTTTGTTAGATACAAGATGCTCTTGGTTTTGCACCCTGAATTAAGAAA
TAGCACCTGTACTAAATCGGCGACAATTAACATGGATTGGAGGGAGTAGTAGTATAGTTT
GGTTTTGGACATGGGGGAAGTTAGACAAGCATGGAGAGGATGACCTTTCTCAGGTTGTTC
GACTCTTGCAAACAAGTGTGCGTTGGTATTAGCCAGTCGGGAAAACAAACGACGAGTAGG
CAACTCGCACAGCTCGATCAGTTTTTTTGTTTTTTTTTTGTTTTTTTGTTTTTGCGCAGG
CACAGCTCGATCAGTTGATGACCGGTTCCATTCAGCAGGCAAATTAATTTTCAAGTTAGA
GACACGAGATGGAGCAACGGAAGGGAGCTTCCTATGCACGCGTTGATGCATCCATCGGCC
GTGTTAGCAAACTTACCTCTTGTACCGGCATGTTGCTTGCCTGTAGTGCCAGTCCCTTTT
GGATTTGATGGCAGTCCCCCCTTCGGCTGTGCCATGGCAAATTAATTCTTGAAAACCCAC
AAATCCTCAAGGCAATCCAGAATAAAAACGACCTTGCTGGTGAATGTATATTACATATGC
GATGAAAAATATATGTTCAGAAACTACATCCGCTTAAAAATTTAATGATATAATTTTTGT
GACATATAATACATATTTAGTTAGTTAAATCAATGATCTAAAACCACGTGCATGTCTTGT
AAACTGAGATGGAGCGAGTAAGAGCATCTCCAGTTGTTCGGCGCCCCATGGCCGCCTAAG
GATCTCCAGTTGTTCGGCGCCCCATGGCCGCCTAAGGACCAAAATGGTGACAAAATCAGC
GTGGGGCGGTCGGGTTCCCAACCGTCGCCCGCCTAGACGTCATTTAAAAAAAACATAATT
CAGCCAAACTTCGGCCAAAACTACTCAAATCTAGAGGAAATTCAAGCATTTTCATTGATA
TTTACACAAACTAAACTAAAAACAAAATTAAAACGGAAATTAAAAACAACAACTACTACT
ACATCGCCGCCTTGAACCTGCTACATACCGAGAAGCCTGTAGAAGTTGGTGTAGTCGTCG
CCATCGTCGTCCTGCACTCCGACGCCGTCCTTGATGCACCCCTGCCTTGGGTCGCCGTGG
CGGACGGGGTTGGACGGCCCGAGCGCCTCCTTGTCGTTGTCGTCAAGGATGACGACGTCG
CCCTCCTCGCGGCCGCGGTGTCGAGCGGCGATCTCCTCGAGGGCGCGACGCTGTCGCTCC
ATTTCCTCCGTAGTCGTCCCGCGCCCATTGAAGCGCGGTCTCCTCGACGGCGGCCATGGC
CTCGTGCTCCTCCTTCGTGGGGAGGAGTGCCGGCTTGCTCTTCGGCTTGACGAGGCGGGA
GGAGGAGGATGGAGGAGAAGGGGCGCCACCCTCGTTGTTAACGAGGGTGCCGCTGCGCGT
GCGCTGCCCGAGCGGCGTCTCCCACGGCTTCGGCTTGGCGGGGAGGAGCGGAGCCGGACG
AGGAGGAGGACGACATCTTCATGCGCCCCGGTGTCCATGAACTGTCGCGGCGGCGGGAGA
AGGAGGGGGGCGTCGGGTACTCCAACCATGGCGAGTTGCCGTCCTCGATGTGCTCGAGGA
CGACATCCAGCATGGGCGTCGCCCCTCAGAGTTGAAGCAACCACGAGGTTCAGCGCCGTT
GGTGGCAGCGAGCTGATCGGCGTGGCGGCGTTCGAAGTACGCCGCCCACAGCGTGTTGCT
GTCGGGGGCGTACCTCGACTGGTTCCGCGAGCTTTCCGGCATCGACGATCGGATGCGCGC
GATCTCCATGCGTCGGTCAGCTCCAGAGGCAAGCGGTGGCACCGGAACTCCGCCGACGCT
AAGCCTTCACAAGCCCGACACCCACATATCCGGTGGTGTCGGGTAGTCTGCCTCGTAGAG
GAGGCGGGCCTCGGACTCGTGCAGGTGGCAGCGGCCGAAACCGTTTGTCGCCGCTTCGTC
GTCGGGTAGCGCTCGTCCATGGTCATCGGTGGAGAGAGGGGCGTCGATGACGAAAGGGGG
AGACGGGCGTCGGCGAAGAGAGATGGAGAAGGGTTGTGGCGAGAGGACTTACGGCAACCG
ACGAGGGAGGGATGACTTATATAGCCGCGGGTGGGTGGCGAGCGGGCGACAGCCGTGCGT
ACACATGGCGGGACGCTCGTCGACGCGCCTTCACTTCATCGCCCGTGAATCAATGGAAGG
CTGATCGGCGACAGCCTTCGCATTCATTCCCCACGGGAAACGAGGCGGTGAGGACGATGA
CCGTGCCTAGTCGCTGACTCGACGGGTCCATAAAGGGTTCGCGCCAAAAATGTTTCCCCC
GACGCCCCCGGGCGCCCCCAGCGGCCGAGTTCGGCCTGGGTCTGCTGGCGGCAAATTCGG
CCCTCACCGGCGAAAAACAGGCTTCTGGGGGCGCGACTAGGCCGTTTTTCCCGTCGGCGA
CAAGAAAGGGCCTTGGGGGGGGGGGGCTGTTGGGGGCGCGGCTCAAGATGCTCTAACGTA
CTAAGACTACTCACGATGGGGAGTAACATAGAGTAGTAACATGCATATGTTACTAGTATA
AGTTACTACCTCCGTAGTGTATATTAATATAGGAGTAGTAACATTGAACCTTTCATTTAT
TAGCTTATAGACTCATCTTTCCTTGGTATGCGTTATGTTACTAAGGCTGCCCGTAATGGT
AGTATCATAAGTAGTATCATGCTTGCCAACTAGGCAATTTTGGTGAGGTGGCATACAATT
AAATAAAGAAGGAGATGGTTGAGTGTCATATCATGATATTGTATCATATTAAATGATGTG
TTACTATGTGTCATGCATGGCAATAAATGAACTATCCTATGATACTAACTTATAATACTA
TGCACTATAGATGTAGTATCATACACTAGTATC