Map Locations of contig_40538 (10215 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_40538

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_56087 3 1998 bp AK364796 Available Available None





CDS Structure of MLOC_56087






Contig Sequence (10215 bp)

>contig_40538 10215 assembly3_WGSMorex_rbca.fasta
CTCTCTCTCTCCCCCACCTCCCCCCTCCCCCACGGAGCGGGATCCTTCCCCACCACCCCG
GCCGCCACCCTCCCTTTTCTTTCTTCTCAGCTCCAACCCCCTTGCCCTGCCGCCGCTGCC
GCCGCTGCGGCCTAGCCTGACTGTTCTCCACGACGCTGCGGCCTCCCCCGCTGTCTTTTG
ACCGCTCCAAACTAGCTTTCTTGCTTCTCTTCCTCCTTGATCGCGGCTAGCCATGGGGTG
GTTATGACACACGGCTTGCTGTTCCTCCGGTAGCGACACGGCACCCGCTGCCGCATCGTA
ACCGGCGGCCTGCCCTTTCCGATCCATCTGGGAAGTCAGCTCCTCCCGAAATTCCCTTCC
TTTGCCACCCCTGGGCAAAGCGGAGGAAAAGGGGGCATCTTTTCCGATCCCGGCAGCTTG
AGAGGCACACCATCCTCCCCTCATCTCAAGCTCTTCTTCCTCTTCTTCTTCTTCCCGAGC
TTGATTCAGGCTCTGGTGCAGCGGTTCTGAGCAGATCCCCGTGCCGGAGGGATCTTCTTG
TAGACAGAGCCACGCGGTCTGTTCCCCTGCCTCTGCCCAAGCTCTGTTCCAGTTTTGGGG
CTCCGTCCTTCCCGCTGCTCTGTTGCGGCACAGCCCCATGGACGGCCTCCCGGACACGGC
GCCGCCCGCGCCGACGCCGCCGCAGCAGCAGCCGAAGCGGGACGAGTGGAGCGAGAGCGG
CATCTCGCGCCTGCTCGAGGCCTACGAGGCCAAGTGGCTGCTCCGCAACCGGGCCAAGCT
CAAGTGGAGCGACTGGGTCGACATCGCCCACGACGTCTCCGCCCACTGCTCCTCCTCCTC
CTCCGACCACGCATCCAAGCCCGGCACCGCTGCCGGGGGCACCGCCAAGACACCCAACCA
GTGCAAGAACAAGGTCGAGTCCATGAAGAAGCGCTACCGGGCCGAGTCAGCCGCCGCAAC
GCGCGCCGGAGTAGCCGGGGCGGCCAGCGCCTCCGGTGGCCCGTCTTGGCGCTTCTTCGG
CCGCATGGACGGGCTTCTCAAAGGGCCCGCATCAGCCGGCTGCTCTGGCCAGCCGCTGGC
GCACGCGGAGCCGAGTTGCGATGGCATGGTCCTGCCGCGAGCGCCGCTGAAAGCAGAGCC
GGAGATCGACGCCGAAGCAGACGTCGCCCTCCAGCAGCCGCCGGACACAGCAGGGCTGTC
CGAGCTACTGAATGCGGACGCCAACGGCTCCGCGACGGTGAAGGCCGTGGATCAGGCCAC
ACACAAGGACAAGGAAAGCAGCAGGGCGGCCGACAGCGACGCCGCAAATGTGAGCTCTCC
GCGGAGCAAGGAGATTGAGGCGAACGACGACGGCGCCGAGGAGGTCGACGGCACGCCGAG
AAAGAGGAAGGGCCCGGAGCTTGACGTCGCGAGGAGCATCGAGCTGCTGGCGAGCTCGTT
CGTGAAGATCGAGCGGGCCAGGCTGGAGGTGTACCGGGACACGGAGCGGATGAGGGCAGA
GGCCGAGGTGAAGAAGGGCGAGATGGAGCTGAGGAGGACGGAGATCATGGCCAAGACGCA
GCTGCAGATCGCCAGGCTCTTCGCCAAGCGGCTCAAGGAGTGCGTCGGCAGCAGGAATGG
CGGCAGCTCCTCTGAAATGGACACCCCCACCAAGAAAGGCGAAAATGGTTAGTTCCAACT
TACCAGTAAGATTGCTGTTTATATCCAGTGCTGCAAGAACATCCTAAATAGTGTAAGGTG
TGAAATATGGATATGTGGAAGTGCCTTTCCGGCTTCATCTTACAATCTATCGCTGTCAGT
TACTACTAATTACTGCAATCATGCTATGTTTGGAGTTATTTTTTGTCTATTCCTGGAAAA
TGATCACTGCTAGAATAGGAAACTGGAGCATGAGGTTATTCTTGCACTGATATGGTAACT
ACTAGGAACAAGATGATCTCTGAATTCAATTTAGTTTTTGCTTCAGATGTACTCTGAAGG
AGCTCTCTGTTCTGTAGTAGTGTGATGGTTAGGACACTTTATGAGCTTGACTGAACTGAA
ATACGGAATGCATTTCTGTGGAACGGCTGAACTTCTGAACCCTTTGTATAAAAATGCAGG
TGTGCTGCTATATACAAGGTTGTTTTTTTCTTTTGGCAAAAACAAAGAGAAAAACTACAT
GTCAGAACTCTGAAATCTTTGTATAAGAAGTAAAGAAATCAATATTGGACGTATTTTGAG
CATCTGTTTACTGGAAGACACCATACTAGGATCAGATTTTCTTAACTTGTAGGCAGCAGA
AGGTTTAGGAGCTGTTCGGCAAGCCTCCAACTCCGTCAAATCTAAGAATCTTGGAGTAGC
TCTTTCCTCACTCTGCATTTTTTAACTACTGCTCCTCCAACTCCGGGAGTGGAGATGCGG
AGCGGAGGGCATCCGAACAGGCCTTTAGTTCCATTGCAAGAATAGCCTCATGCAATTTTG
TCTATTCCTGGGAACAAGATGATCTCTGAATTCACAAAGAATATTCTAGCAGTGATCATT
TGTTGTTGGTATATAATGGCAAGCTCGGAATATTTAGTTCCATTGCAAGACTGTATAGTA
CTCATAAAGTGTCCTTACCATCACAAGACTGTATAGTAATCATAATGAGTAGAATTCAGG
AACTGTGGTAGTGCAAGGGCTAAAATATAATCTGCTCATTAAACGAATCAGAGGTCTGGT
TTAGGGAGGTGTAGCATAAAAACCGGCCCTGGGAGTCGATGAACAATTATAGAACTTACT
TCTTGGGTGATATGAACCTGCTGAATTTGTTAGTGCACATCTAAGATTTTAGATGTGCTT
GTTCAGTTATAAGACCAACTTACATTTCGTATTATGAAAAGCAACATGTTGTACGGTCTG
CTTAGATCCTTGCTCTTACCTTGTTTTCTGTTAACTTTTCAATTCTCTTCTCACCATTTG
GCTCATTGCTTTCAGGTTCAGGGTGACTGGCCAATCAAAGTAGCTGTGATTCTCTTCCCT
CGGCAATCGCTCGGGTTATAAACAGAAGATTGGTGTCTCGCTCTATTCATGTGCGGAAAA
TGTATGTCTGATTGATTCAGCTTCACCATGAGTGAAGGCATGTTATATAGTTAGCCGTAA
AATCAAAACGCAATAACGGAAACTTCGGTTCCCCTTTCCAGCAGGGTCTTAGAAGATGCA
GTTTTACAATCAGGAGTAGTTTGCTAGTCCGAAATTTGTCAACTTGCATTCCCGCCGAAG
TGTTTTACTGACAACCATCGCTTGTAAGACGCTGTGGTTCTTCTTTCTCAGTGCTGGTAA
CCGGATGCTTCTGTCATGCCGGAGAGACGGTATGGTGCTTGTGTTACTATTGATAGTATG
ATTCATTCATGTACCGTTGATAGTAGTATTGTACTTCCTCTGTGCCACAATACTTGTAGG
ACAAATTCACTGTTCTGGCCCGCGTGACGTAAAGAATTTACAGAACGAACTTCCCTCGAA
AAGATTTTACGATCTGATCTTTTTAGAAACACTAAAAAACGTGGCATTACTGCGGCACTT
AGAAACGTCAGTCTACCGTGACGTTTCTGATTTATATTTAAACGACAGTCTACAGTTAGG
TTGCAGTCTAAATAGAAACGTCTGTCTACAGTTACGTTGCTAGCCACGGTCAAAACGCCA
GCCATGCATACTGATAGTAAGTAGGAAAAGTGAGTGAGAGGCCGGAGCTAATGCACAGCT
AGTTAGCTAGTAAGTAGGAAAAGTGAGTGAGAGGCCGGCGCTAATGCACAGCTAGTTAGC
TAGCCGATGCACACACAGGGCCACAAAAGAGGGGCTGGGGAATGCATGCATGCTAATGCA
CAGCTATCTAGCTAGCTAGTAGTACTGATCGGTGTGTACTAGCTGAATTCTTCAAAAAAT
AATTGTACTCCCTCTTTCATGGTTTAAAAGCCACAATTAAACTTACGTGCATTTCTAAAA
TAGACAAGATTTAAGGCACGAAAGCAATTACTTCTTTTAGTTAGTACTAGTACTACTCAT
GCATGCATTATTCCAATTTGCTGTTCACACGTTAGTACTAGTATTTTCTCAGTTAATTAG
ACGCATAAGCATCTACACCTGCCACATCTCACAACCAATCGGTGACTACCTTGGTTTCAG
AGATTTTCCATGATATATGCTGATGTGCATGCATGGCAATCAATCAATGCCTACTTACTA
GGACTGCAGGAGCAGCAAGACAGAAGGTCTAGGAAGGGGTATACATGTTTATGTTGTTAT
TGCACCAGTAAAAAAGTCTTGTGTTTTTGTTTCTGTCAAGTTATTGCACCAGTAAAAAAA
GTCTAGGAAGGGGTAGTATACATGTTTGTGTAGTTACTGCATGCAGGCCGGCCTATAGCT
AGCGCGGAGCCACGCTGCACACGCTGCTCCCCTTGCCATCCACCTCAAGCAGCTCGTGCA
TGCATGCATGTAGCACTGCTCATTAGCAACGCCATGCAGGTTGGCATTGCAGTATGGAGC
GAAAACGTCCCGGTTCACGGGCGTTTTAATGAAGGCAGCAAACGCCGTAATAGTCCGGCG
TTTCATAGTTGACCTGCAACACCACGATTTATGATATTTTTAAAATGGGTTAAAACGTGA
AATTTTTTCGGGGCGAGTTCGTTCTGTGAATTCTTTACAGAACGTGGATCAAAACAGTGA
ATTTGTCCAATACTTGTAACTGCAGTATTTGCATTAATGTTCTCCAACAACAAGTATTTA
GGTAGTTGGGAGGCAGGTGACTGATATGTTAATGTCAAGCTCAGCGATGTTTTGCTATCT
TTTCAGTTTTGTTATATAGATTTTTTTGTAACTTGTAATTTGGTCTTGGGCACGTATTAA
TGTGCAAAAAAGTAAATATTTAAATATAGAGAGAGTATATGGCTGCAAGAAGTCGTTTCG
TTTTCAAGCTTTTCAGATATACCCGTGAAAAGAAAAACACTTTTCAGATATATAAAGATG
CGACGGGATACCTTTTCTGGACCCCTTTTTGCTAAACACTTATGTTTCGGTACAACCTAC
TTAGACACATAAACGGTTCAGATTAGCCCATACTCCTTCATAAAAAAAAGGGCAGGATGA
GGATAAAAATGTGCAAATTAGCCCATATCCCTTCATAAAAAAGGGCAGGATGAGGATAAA
AATGTGTGTGTCGTATCGCGTCCAAGCGCGCCGCATTGCGCCGTACGCGGTCCGTACGAA
GCCGGATCCGCCTATACGTGGCCCGCCGGATCCGCCTATACGTGGCCCGTGTACGGCTGA
CCAGCGCGAACCCTACCTCGCCATCCGCCCTCGTTATTGCGGTGTAGAGGGTCGTTTAGT
CGCATCAACCGCCCGTCATTACTGCGGCGCGAACTGTGGTGCTCATTACTCTGTCGCGGA
CCGCCGAAGCGTCCCGTCGACCGCGTGAGTGGCGCCCGTTTTCCCGCCGCACGTCGCCTC
GGTCAGCCCGGTGCCGTTTCGGCCCGCTTGCCAGCGCGAACCCTACCTCGCCCTCCGCCC
GCGTTACTGCGGCGGAGAGGGCCGTTTAGTCGCGTCAACCGCCCGCCATTACTCCGGCAC
GGATTGTCGTGCTCATTACTCCGACGCGGACCGTCGAAGTGTCCCGTCGACCACGTGGGT
GGTGCGCGTTTTCGCGCGCGGCGTTGATCCGCATGTCGCCTCGGTCAGCCCGCTGCCGCT
TGGGTTCTCCCGCCTTCGTCATCAATGCCCCAACCACCACCGCCGATCGCCTCCTCCCGC
TCGCCTTATACAAACGCCCTGCCCCCGGTGCCTGACTCCCGCACCAGCTCGTCCCTCTCT
CCCTCTCGCCCTCGTCGCCTCTTCCCGCTCCTCTCTCGCCCGTCTCCCTCCGTCTCCGGC
GATGGCGCGCCCCAACGTGATGCTCGAGGAGACGGAAGAGCTCGCCCACTTCAGCATACC
CGCGGCAACGGACATACGTATGCCGTCGGGGTGGCGCCTCAGCGTTGACAGAGTGCCGGT
GGCGCCGGTGCCCGAGCCCGGTACCCCCTTGTTCGCCCGCGCTGTCGGCCTCTACCGGGC
ACAGCTGTCGCCGGAGGAGCTGCGAAACCCTCTGTACGCCCCCAACAACCCCGCCTGGCC
GGACATGCTCGCCACCGACCGCGACGCGCGCCTCCACGCGTTCGCCGGCCCGCGACCGTC
GACGAAGGACAACCGCGCCCGACGTCACCGGTTGTGGGACGGCTGCAACTTCAAGGAGGT
CGTCGCCCAAGCGGCCCCCGGCGCCATTCCAGCCCCCATCAACGCCGACTTTGTCGCCTT
CCGCCGCGGCGTCGTGCGACCCTCCCGCGTCTTCGGCGACCGTGGAGGCTCCGACAAACG
TGCGTCGGTCTTGCTTGGTAACGGTGACCGCCGCACCGTTGCCGCTCGTGCGGCGGCCGA
CGATGCTGGATCGAACCGCGCGCCGGAGCCGGAGCCTGCCCTTTTGGCGGAGTACCGGCA
GGTTGCGGCGCAGGAGGGCGACCTGGACCACATGCCAGGGCTGCAGGAGGCCATCCGAGC
GTCAAAGATGGTCGTGTCGCCGCAGCTTCTCCAAGACTACATCCACATTGCGTGTGTCGC
CGGCCACCCCAAGGACCCACCCGACTTCCCTAGCTACAATGTTGTCGTTGCCGACTCCAT
TGCACTTGTCGTCGACGTGAGCACCAACAGCAGCAACGTCGACGATGAAGACGGCGGCGA
AGCATTTGGCTTCAACGAGAAGGACCTCGGCCGCGTAGACGACTAGATTAAGACCTAGAA
TGTTTAGTTTAAATTTCATTCAACCATTATGTAATATTTCCTAAAAAGTTGAAATGAAAT
TAAGCATTTTAAATTTTAAATAATTGTTTCAAAGAAATGAACTAAGTATTTGCCTTAAAT
TTTTTTAATCTTGTTTAATAAAGTTAAAAATGTTGAGAAATAAAGTTTTATAAAAAAATA
AGTTATAAAAATGTTATAATAATTAGTCCCCGTCCGAAGACAAGACTCTAAATCGAACTT
ACGTGTTACATAAACACCGATATGTCTTTTTGTGCATACATTCATCTTCAAACTTCATGA
AACGGTCCCAATTTTTTTTGTAAGTAGCATGATTTGTGTTCAGCATCGGTGCCAGGTTTA
AAAGACGTCTGACGTTCTATGAATTTTCTAGGATTTTATCATTGAAAATAACCGAAATAC
TCTCCGGACGTGACGCAACGTGTGTTTGGTGTCGGATTTCGTTCATATTTCGCGTGGGGT
GCTCTCGTGATCATGCCCACCTCTTTGCAAAAGTTGGGTAAATTTCATTATTGTACGCAC
GTATTTGATATACAAACTTATCGTGTTACATACACACCAATAGGTCTCTTTGTGCATACA
TTCGTTTTCAAACTTCACGAAATGGTCACAATTTTTTTCTGCAAGTAACACAATGAGTGT
TAAGCATCGGTGCTAGGTTTCAAAGACGTGTCACGTTCGATGAATTTTCTAGGATTTTAT
CATCGAAAATGACCTAAATACTGTCCGGACGTGACGCAATGTGCGTTTGATGTCGGATTT
CGTTCATATTTCGCGTGGGGTGCTCCCGTGACCATGCCCACCTCCTCGCAAAAGTTGGGT
AAATTTCATGATTGTACGCACATACTTCATGTACAAACTTACGTATTACATACACACCAA
TAGGTCTCCTTGTGCATACATTCGTTTTCAAACTTCACGAAACGGTTCCATTTTTTTTCC
TGCAAGTAGCACAATCGGTGTTAAGCATCGGTGTGAGGTTTCAAAGAGGTCTAACTTTCA
TTGAATTTTCTAAGATTTTATCGTTAAAAATAACCTAAATACTGCCCGGACGTGATCTAA
CGTGCGTTTGGTGTTGGATTTTGTTCATATTTCGCGTGGGGTGCTCCCGTGAACATGCCC
ACCTCCTCGCAAAAGTTGGGTAAATTTCATAATTGTACACACGTACTTCATGTATAAACT
TACATGTTACATACACACGGATAGGTCTTCTTGTGCATACATTCGTTTGCAAGTAGCAAA
ATCAGTGTTAACAATCGGTGCCAGGTTTAAAAAACGTCTGACATTCGATGAATTTTGTAG
GATTTTATCATCGAAAATGCCAAAATACTAATTAAAAACCCTTCAATGTGCATGGCGGTT
AGCGCCTCTAGCCGCGCAAGATGCGGCGGCTACGTGCTCACCGCGCACATGATGGCCCGA
CCCAGTACGACGATCTAGGGCGGCTTTAATCAGTTTTCTAATTTTTATAATAAATTCATA
AGATGTCCGATTAAGCGTAAATTTGGCATGCATGCTTCTAATGCTTATAGCATGCAACAT
AAAAAAAATTCAACCCGTTTGAAGGATGTCGAAAAAAATCCTCCTTCAAGACAAGCCCTT
CGTTCCTACCGGAAAGGCGTGTGCTGAACAAGTGTCGTTTTTTGGCGTTCTTTAGAATAG
TATGAAACTTGGTGTGTGGGTTCATATGCCTACCCTAGGATCTCACAAGTATTTTCTACA
AAATCCGACAACTAATACATAGTGCATCACGTTCGGTTATTATTTTTATAATTTATCTTC
GTAAATTCATAACAAATTCGAAAGATGTCTGATTGAGCCCAAATTTAACAAGCATGCTTC
TAATGCTAATAGTATGCTTCTAATGCTTGTAATTCACAACACACCCCCTACATCAGCACA
GTGAGGTAGGACCACCACTATTAAAGAATTAACAGTATAAACAGATAAACCTATTTAAAT
TGGTGTTATCTCATCTAAGAAAGCAATGTTGGATTAATAACTGTAATAAAATTCGTACGA
CGGTGACCGCCGCAGTTGCGGCGATCGGAGTGCCACGGGCGTCCAACCTGCTTGACCAGC
ATGCCACGGGGGCTGCTGGGATGGCCCAGATTGCGTGCCACGGGCGCTACTGTGCCAGCC
ATTTCCGCTCGAGCGGCACCCCACGACGCGTGCATGAAAGCCGCTACTTTAGTACCACCT
TGCCGAGCGAGGGCGCTGATGACCGTCTTAAGTACGCTGACGCCGTCAGAACAGGGGAGA
AAGTTATATATAGATATCCGCCGCTAATCGCCGCGTGTACACGCCCCGGCGCCGTTCAGT
GGACTTTTTTAATTATCTATTTTCGTAAAAGATGAAAGAACGCCGCTGATCGCCGGTAGC
GGCTACAACAGAGGTGACTTAACAATAAGGAAATAATATCATCATCAACGTTTGGATAAT
AACACATAAAAAATATCATCCATAATGTATCATTAGCATATTCATTTATGTTTGAACAAT
GGGTAACATATAAAAAATATCATCATCCATATTGTCATCGTCTTACATTAAAACAAACAA
GCATATAGCGATGATGCTTTATCACAACGATCTAGTTTGTAATTCGCTCATCCTCCTATG
TTCCTGCATACAAAGATATGAGCATTTGTGTAAGTTTCATAAACACTTGAATGAAGAACA
TAACTAAATTGACCAAACGAAAACACGTACTTCGGATTTGCAGGACAATTGTTTTGAAAG
TGACCTTTTGTTCGGCATAAACTGCATAGGCGTTGCTTCTTCTCGTCAAAAGCTATTGGT
CTACCATTTTTAGGCACCTTTGGATCGTCTTTAACATGACCTTTATTGTCTTGTTTGGGT
GCCCCTTTAGTTGAAACTTTCACTGGATCACGAACCAACACATGGTCGCAATTTGGCTGA
AATGCATCATCCTTCGCAACTTTATGCTGTCTCACATAATCACTTTCCTCAACGTCTTCA
TTCGCTATTATATCCTGCACACAAGCCTTCATCTTATCGAATAAAAATGATTTATGACAT
GCAAAATGAGATGCTTCTGCAGATAATATAGTCAACTCATTGTACTTAGCTCTTTGCTCA
GTACCAGCCCATCCCCATGCAAACAGATCGCTAGTGCGCTTGATGGGCAGTCCACCTTTA
GCATTTTTGGTGAATCTCCGCAGTACTAAACACTTAGGTATTTCACGAAAGGCCAGCTAC
ATCAGCACGTAAAGAATATGTTTGCAAGGAAGACCTTTGCGCCTCATGCTTTGACAACTG
TATTTCACTGTTTCTTCAGAGTTATCAGGTGTGTAGTCCACTTTAATAAGAGATCCTTAT
TATTCTTCCATGCCACTACAAATCTCCGACCGGCTTCTGATGTCTACGCATGCTTTTATT
CTTGTAGACTATGTT