Contig Data
morexGenes
Links



Map Locations of contig_40488 (4054 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_40488

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_56031 2 1653 bp MLOC_56031.1 Available Available LOC_Os12g07010.1, FRAME:+2, EVALUE:0.0, 13112.m00726 protein ribosomal protein L3, putative, expressed





CDS Structure of MLOC_56031






Contig Sequence (4054 bp)

>contig_40488 4054 assembly3_WGSMorex_rbca.fasta
TCTCCAACGGTTCCACTTGTGGTTATCTCTTACCTTTACTTTGTCCTTATTATTGCTGTG
ATGTATTCCTCACTTGCATTAGTTGCTGTTCTTGTTAGCATCATATAGGTTCCTCACCTA
GCTGTTTATCTAGATAACCTTTTGTTGCTAACCCTAATTTATTAAGAAGTGCTAAAAATT
GGTAGTTGCCTATTCACCGCCCTCTAGTCAACCATATCGATCTTTTCACCTTCTTAACGC
TTCACCTACATGAAACTTCGGAAAGGCTACTAGTTGAGCGCTTCAGTGTGGGAGGGAGGG
GAAGGGGGGGGATCAAGACTATAATGATGCACCTATGAAGTCTTCTTCTTACATAACTCT
TGCAACTTATGCGAACAAGTATAATAGCAAAACAACAAAATGTACATGTACATTGGAATA
TACCTTCATGGACCTCCTCTTTTGTTTGTCACCAAGAGACATTTTATGGGAAATGACTCT
TCGAAGCCCTCATATTCAGAGGTTTTTTTCATAATCAAACAGAAACTACAATGATATATG
CGAGGCTTACTGACTTTACATTACATCTTCAAAGCACACTCTAATTAAGGTGTCCAAACT
GATCCTCAAAAAATAAATAAATAAAGGTGTCCAAACTGACCCGCCAATTTTTTGTAAGGT
GTCCAAACTATCTGATTTTTCCAAGGCAAGTTCAAACTATCTGATGCCTCTTGGGGTCAA
CATACGCCACATCAACCCTCCCACCTTGAGCCGGTCCTATTTTCTTTTTTTCTTTTTTGA
GAAAATCAGAGTAACTTTGTTTTCTAGAGAAGGCACATGGGCCGTAGCCCACACCAAGAG
CAGAGAAACGGGCCAGGCCTCATTAGCCCTAGCAAGATCCGCAAGGGGCATTTCCGTCCG
GCCGAACAGAACCCTCACCCCGGGGTCCCTCTTTATATAAGCTCTCCTAGGGTTTACGTG
CCCTCCTCCTCCACACACCACCCTCCCCCATCCGCCGCCGCCTCCACCTCCACAGGTAAA
CTGCGCCGCCTCCGCCCTCCCCCCCGTTCCTGCTCCCTCCTCACCGTCGACGGCGGCGGA
CATTTCGTTGTCGCCAGGCTCTCCCGCCGCCGCCCTAGTCGTGAACTTGTGGCAGTTTCG
TTGCTCTCCTGTGTTGCCTGGATCTGATGGATTCCTGCTTTGTTTTCTGCAGGGGAAGGA
AGGGAGAAGGATGTCGCACCGTAAGTTCGAGCACCCGAGACACGGATCCCTCGGTTTCCT
CCCCAGGAAGCGTTGCTCGCGCCACCGCGGAAAGGGTATGCCTGCTTGCTTAGCTACTCT
TCACCTGCCGATGCATGTTGAGTCGATCAGTGAGGCAAGCCAGCTTGTGAGGGTAGATTT
TTGGGTCCATCGCTTTTGGTTGAAACATTCCTGTGTTAGACCTTTTCGTGTGCAGCAGTA
GGCTTGTAACCTGGAATTCACGCCATAATTTGGGTGTCTTATATTTTTACCTGATCTAGT
GCCTAGTTAGAGTTTTCAATTAGTTCATGTGCATCCTGTAATCCTTGCTGTGCTCGTTAC
TATGGTTGCTTTGTTGTTACTGTGATTCTGTTGTTATTGTTTATGTTGAGCTACATCGCC
GGTAACCTATTGCTGGTATCATTCATAATAGACTTACGCATGCATTCGTGGACCAGTATT
CGGTCAATCTTTGCTAGTCTGAAAAGATGCAAATGCTATGCACTTTCAGCAAATATATAG
TAACTAAAATTCGTATTGTTTTACTCCCTGTGTTACATCAGTGCCATGTGCCACACTGCT
TGTTTGATTCTTCTATGCTGCTTCAAATCATTGCGAAGATATGACACCCCATTGTTTTTG
GTATCTATCTAATATTTGCCTGTCTTCATTGCAGTGAAGGCTTTCCCCAGAGATGACCAA
TCCAAGAAATGCCACCTCACTGCCTTCCTTGGCTACAAGGCTGGCATGACTCACATTGTG
CGTGAGGTCGAGAAGCCTGGTTCCAGTATGTTTACTAACTCTCTGTCTATGTTCCTTGTT
TTACTCAACTGATTCCTTCCCACCACTATTGCTGTTGAAATGCTTTACTGCAATGAAGAC
AGGCAAATATTAGATAGATGCCACTCCATTTGTGATACTGAAGTTGAATCATGAAGCTGC
TAGTTAGCAAGATTGTAAATCTCCGTTGCATATGTGATAACACTCCATTTGATATTCCAC
AGAGCTGCACAAGAAGGAGACATGTGAGGCTGTCACCATTGTTGAGACACCCCCTATTGT
TATTGTTGGACTTGTTGCCTATGTGAAGACTCCTCGTGGCCTTCGTACTCTCAACTCTGT
CTGGGCACAGCATCTCAGCGAAGATGTGAGGAGAAGGTTCTACAAGAACTGGTGCAAGAG
CAAGAAGAAGGCCTTCACCAAGTATGCGCTGAAGTATGACAGTGATGCTGGCAAGAAAGA
AATCCAGATGCAGCTTGAGAAGATGAAGAAGTATGCTACTGTTGTCCGTGTTATTGCCCA
TACCCAGGTCAGAAATTATCTTGGTACTTTCTATCTTTATCTCTTTCTGTTCACTCATAC
AGTAATGTTACTCATGCTGCTCTCTTCATGTGATCAGATCAGGAAGATGAAGGGGCTGAA
GCAGAAGAAGGCTCACCTCATGGAGATCCAGATCAATGGTGGCACCATTGCCGATAAGGT
GGACTATGGTTACAACTTCTTTGAGAAGGAAGTCCCCATTGATGCGGTTTTCCAAAAAGA
TGAGATGATTGATATCATTGGTGTAACCAAGGGTAAGGGTTATGAAGGTGTTGTGACACG
TTGGGGTGTCACCCGCCTTCCCCGCAAGACCCACAGAGGTCTTCGCAAGGTTGCCTGTAT
TGGTGCCTGGCATCCTGCTAGGGTGTCCTACACTGTTGCTCGGGCTGGTCAGAATGGATA
CCACCACCGGACTGAGATGAACAAGAAGGTGTACAAGATTGGCAAGGTTGGACAGGAAAC
CCATGATGCCTCTACTGAGTTCGACAGGTGTGTTTTTGTTCCATTAGCTGCTGTGAATGG
CAAATTTTGATGCCATCTAGTTACTTGCTGATCTGAATTCTATGTGTTGATCGTTTTGCA
CTGGTTTGTTCTTACAGGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCTCACTAT
GGTGTGGTGAAGGCCGACTACCTGATGATCAAGGGATGCTGTGTCGGGCCAAAGAAGCGT
GTGGTGACCCTCCGCCAGTCCCTGCTGAAGCAGACCTCTCGTCTCGCACTGGAGGAAATC
AAGCTCAAGTTTGTCGACACCTCTTCCAAGTTTGGGCACGGCCGTTTCCAGACCACGGAC
GAGAAGCAGAGGTTCTATGGCAAGCTCAAGGCTTGAGCTGCTGCGCAATATCAGTTGTGT
CATTTTGTCAAAACGAACATGTGATACCTTGTTACTTTCCCTGCCCTAAGTTTTGTAGCT
GATGTTTCCAGAATCTATCTTCTATGAATGTGTCATGTGCTATTGTTATTGTGATTTAGT
TCTTGGAACCTAGAATCAAACCTGGTTGCAAATTATGTGGAATGAGTTGGCGGTTAACTA
ATTTTGTGTGAGCTTCGTTGTTGGGCGACCTTAGAATTTTAGGTTTTAGGTTAGTGTAGA
ACCTAATTTCTCCCGTACCAGATCTACACTTTGATTTAGGATACATATCATTGTATGCTT
CATGCCCCCTTCCGGCATCCAGTGGAGAATGCGGCTTCTTGGTGAACTTCCCTACCAGCC
ACCTCTACCTCTCTTTCATTTCTCCCAGACGTCCCTCTTTCGCATCTCCCCAACGGCCGG
CATTTTTTCGTCCTCGCTGCTGTTCTCCGCCGTGAGGCGACGACGTTTTGCTTTGGTATT
TTGCTGGGAACAAAGCTGCGATCGGTGACGGTGGCATCGGGATGCTGCAACCGACCACCA
TCGTGCTACAATGGCCCTGTTTGGATACTCTAACCGGGTTAGAGTTAGATTCTAACCCTC
AACTAACACTAACCCAAGAGGTGTTTGGATGAGA