Contig Data
morexGenes
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Map Locations of contig_40476 (7097 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_40476

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_56010 1 466 bp MLOC_56010.1 Available Available None
MLOC_56012 6 1452 bp AK249062.1 Not available Available None
MLOC_56011 2 1088 bp None Available Available None





CDS Structure of MLOC_56010






CDS Structure of MLOC_56012






CDS Structure of MLOC_56011






Contig Sequence (7097 bp)

>contig_40476 7097 assembly3_WGSMorex_rbca.fasta
TCGACAAGATCAGTCCTCAGCCTCCTCCTTGTAAGTCCCATAAATCTTGGTTTTCTGTAT
TTATTCTCCCCACTAAAGATAAGTTTGCAAGGCTTATTTGAGTGAGTATTCCTTTGCAGC
TCGGTTTTCATCTTGCGATATTCCTTCAATCAATCTGGTGCTCTCATCATAGCTATTGTC
CTTGCTCCCTCCCCTCCCAAAGATTCATTACAACATCTTGCTAGCTAGATCATCATCGTG
TATATATTTTTTCTCCTTTTTCAAATACCTGCAAAATCTTTCGGACATAGATATATAGTT
GCTTTAATATCAATTTTTGTTTGTTTGGTAATGGTCGTGCACCATTCATATAAAAAAGTG
CTTACAGAGACATAAAGGGAGACTGATATGAGTTAATTTGGAGTATCCGCCATCCAATTA
AAGGACGTAAAAAATAGCTAACATGTGTGTTTCTGATCACCACAGTCTACAGGTTTGGTA
GTAAGAACACTATTAATATTGATAAAACCCAATAAAAGACGGGGTGAAAAATGCTTAAGT
TTACACGTGTGTTGCCTGATCACCACAGTTTACAGGTTTCCTAGTAAAAAACTGCTAATA
ACAACAAATCCGACAAAAAAAAAGGTAACGTAATATGCCGAAGTCAGCTTAACAATCGTT
CTGTTTTTTATAATGGCGTCCATGAGAACGTTTCCTCTGAAATGTTCAGAATGTAGGGGT
GGTCTGCGGGTTTATTACGAGGAAATGCTTAGACTTTTTCGACGAAATGCTCTCTGAGTT
AGAGCAGATATATTGGTCTGTATGTGCCATCGTGCCCATATATCAGACCCATGTGCATCT
ACATGTCAATCTGCGCGCCATTGGGGTCGCAGTCAATAACCTGATCTGATTCTGATCCGT
CCATGTCGTCATTGTGGAAGTTTTTTTTTAAAGGAGGATATATTAATATGCCAAAGTTTC
TTGTTCTTTTAGGCTACTATACTATGTTATGATAATTTGATTTGTTCAGTCCTTTTCTTT
GTTTACATTACCTTTTCTAGCACACTTTTTTTACTTATTAATCAGACCATAAAATACATT
CAGCCCTGTTCAGCACAGACAAACTAAGTCCAAATCCTCCATGTTACAGTGTGTGGTTTT
AAATATACATTGATCACTTTGTTCAACTTAGAATTATGTTTCTGCATTGATCACTTTGTT
TGGTTTGCTTTTATTTTTGTTAGATCTTTTATCCTCTCTGGATGATTGTTTTATTTTTTG
CATCTACTGGATTTGGGGCAACAGAGCTTTTATCCTCTCTGGATGATTGTTTGGTTAGCT
TTTATTTTTTGTTAGATCTTTCCCCCTCAAATTTGTTTGTTTGTTTGTTTTTAACACTGT
CTCATTCCTCTTGTTTCTTTAGGAACATCATACACAAAGAAATCATGGATCTATATCTGT
TGCAGTGTATGGCGATCATGACAAGCCTGCTCTTGTTACTTATCCAAATGTTGCTCTTGT
TAGTTATCCAAATATTGCTCTTGTTACCTATCCAGATGCTCTTTACTAGCCTGATCAGAT
ATGTCTTGTTTTTAAGGATTACTCTTCTGCCCTGAAGCTGCTTCACTGCTTGAACAATTG
CCAAGGATTAATCTTCATGAAATAATTTATGTCTAAATGCACAATGATTGAACAATTGCC
GACTCCTAACTTTGGTTATGTAGCAGCGAACGAGACAAGATAAGTATGCCTCAATAAATT
TGTAATTTAAATTGTTGATTTTGAGCACTATAAATTATAGGAACTATCTTCAGGTGCTAT
TATATAAATAAAAAAATAGCTCATTTTATACAAAGTGCAGTCTGTGCTGTTTTCAAGTAT
GTATATGCCTATTTGAAAATTTGTGTTGTAAAAGTGCATTCTGTGTTGCTAAAATTTGTT
GAAAGTTGATGCTTTTGAAAGCCTGAGCTGGGCTATGGCAGCCAGGTTAGAGGGGTGGAA
GAAAAACAACATTCCAAGCGATGGCTGGGATGGAAATACAACCCTGTGGCATGTATTTAG
TTGGAGACTGGTATAATACATGTGTAAAATGTTACAAGGATGACAGAAAAACAACATTCC
AAACACAGCCTTAGAGATTATGTACACGAGTTCCGACCACTTGCATACAAGATTGAGTAT
ATATAACCCTGATGTGCACAAGCACTGCCTGCACTTCACATATTATGTACATGAGCTACG
AAGCATTGTGTCATCTAGTTTAACCGATCATCTACTATTGATATTTTTCATTATTTTACC
CTCATGTGCCCGCCGGCACAAATGCTTAATTTAGCTTAGCCGATCACAGCTCTGTAAACA
GAAAATTTTGAGGCTGCTAGTTTATCCGTTGGCTTCCTCTGCAACTTTAACTCAATAGTT
CTCGCCCAAAAAAAAAACTTCAACTCAATTGATATTCAGCGGGTCACAGTGATTTATACT
TCTCAATAAGATTGGACGCGTGGAGACGAGACGTGGGTGTTATGGTGCACCCCAGGCTCC
GGAGGTAGGATATCTGTACAGAGGATATAGCTCCTTAAAATCAACATGGTATAAAACAAT
ACGAGACGTACATTGATTGGGGAACATAATGGATCTTAGAGAGAACAACTAGACAAAAGC
CAAAGGCAGGTATTATATGTATCTGACTGACCTGCTTAGGTGTAGGCTCTGAAGAACCCA
TGGAGTTCTCTATCCTCTGCTTCTGGAAATGTTCCTGAAAGTGAAAGAGAACCATCAAAG
TAAGGATCTTCTCAATGTCAAAGTTAACATAACCAGCCTTGCTCGTATAAAAAGAAAATC
CAACTTGTTTGCAACAGAGGATGATTCAGGACTTGCCTGTCTCTCTCTCATCAAATGGCT
TCGCTTGTCGATAGGAATTTGTTCCCACTTGATAACCTGAGTCACGGCATTTAGTTAAGA
ATTTACCAGAGTTTGCTGCCAATAAACCAAACAGTGACTTAACTCACATATTCTGCGTAA
CCAAGCGCTTCATCGTCGCTTAACAATGACTTCAGCTTGCACAAGACATCCTGGAGAGCA
ACTTGCAGGTCAACTTCTCAGGGTAAAAGCTCTCATTGAAAAGAGCATGTAAAAAGCAAA
TATCATTGATTAGCTATGCAGCAAAACTGTAGGTGATGATCCAACCAGCATGAAAGTAAT
GACTGGGAACGATGGAGCTGCGAGATGGAAGGAGAAAAGGGTGAAGTCACCTTGCGCTTG
TACCCTTTACCACGCAGGCGTTCATCGATCACAAATTTGATCTGAAAGGATAAAAACAGT
GCCAATGATAAGGTTCAGAATGAGCATGTCGCCATTCTCAAATAGCAAAACTGTCATATG
AAAAGACATAACATCAATTCTGCCTGCTGACAACACTAACTTCATTCAGTTCCCCAGAAC
ACCAGCGTATTAATTGTGTGCATTATATTTTTCTTCTAAAAAATAAACAAGATGATATTT
GCAGATTCCGTCACTGCTAATATAACTTTTCCGACAATTGGCATGTGTGGTGTGACACCT
TTCTTATGTACACTTAAGAACTCAGTACCTTATCAAGCAGTCTCTTTGGAATTTGAAATG
CCTGCTTCTTCGCCCAATGATGAAATATATGTGAGACTACTGCTCGATCATCAATTTCGA
ACCTGTACAAAGAATGAACTCAAAGAAGCAAGGAAACAAAAACAAGCAAACATGCAGTAG
CATAGCAAAGTATGTACATTAGTATGTTTGCTAATATAACAGAAACCGTGCAGAAAAAAA
TAACATAGCATTCACCAATATTATTAGAAACAGAAAAGAAAAAAAAACTAAACAGGAAAT
GGAAAATCGAAATACAATGCTTTACCTCTTCAAGAAATCATTAGCAAGGCATGACTGCAT
CGGTTCAGGGTAAGGTGAAGTTTCATTCAGATTTGCAATAGGCTTTTCAGTTGACGTCTC
TCCTTCAGCGTGATCAAATGAAATGTCTCCAGAAGGCTGCCCATGATATTTTATTGCAGC
CCCCTCACCCTACAAGTTATCAAAACAAGAGAAAGAATAATGCTAAAATTCCACTGACAT
AATGATGGGTTACATGTATATACTGCCCCTATAAAAGCACGAAAGGACAGATCCAAATCA
CCATCTGGACGGTCTAATCACAAAATCTAAAGGTCTAAAACCTCCTAATGTTGAGCGTTA
ACGACGTCGAGCGCGCTAACGAAACGCTAATCCCATCGATCCAAACAACCCCGGTACCGC
TTTGTCTCTCTCCCCACTCCGCACGATATCTGTGTGGCCGCTGCCAACTGTTCGAACGCG
CCGGAGACGCCAACCGCCGCTTCTTCTCTTCCCTGTTAATCCTCTCAGCCGCACCCCGTC
ACACCCGCCGCTCGTCGATCCTCCGGACTCTGACGGAGCCTGAAAGCCATTAGGCTGGCG
GAAGCAGTGTTAGGTAGTATTAGTATTGGTCTAGGAGTCCTATTAGGCTATGTTTCCTTT
CCTTGTAACTCAAGTCATGTGTAATATATATATATATATGCCCCATGGGCTATGTAATAG
AGATAAGTTGCTTTCATAACATGGCATTAGAGCCTACGTTTAGGTGTCCCGACATCACAA
CTCGTCCTTACAATCCACTAGTTTTTTTTTCTCGATCGGCCTGTTCTTCTCTAGTCGACC
CCGTCTTTCGCCGTCGTTCCCCTATCTGGTGGGCCGCCGCTTCTCCACGACACGGGCACC
CCTGTGAAAGCCGCATGGGCGCATCGACTGCTTGCCCAGCTGCTTCAGCGTGGGCACCTG
CTACCAGCTCCTCTCTTTGTGCAGCCGTTATGCCGCGCTGCCCGTATGCGCATACCCAGG
GGTTCCTGCTGCTATGCGGTGCTCCTCTTGGCCGCCACTGCCTCTGTCGGCACGTGCTGC
ATGCTCCCTTGGCCGCAGCGTGTGCTGCTCTGCTCTCGCACGTCCATCTGCGTGCTACTG
CTGTTCCTGCTGCCCTTTGCTGCTTTGTGTCTTGCTACCTGCTGTGTTGGTTGCTCTACT
GTGACTCCTCTTGTGACCTTCGCACATGATGATTATCTCTCCACATCAACTATTCTCATT
GCCCGGTGATTTTCAACGGTGGTCGTTTCGTCAACTTCGTCTCACGCATGCACCTTCCTT
CGGTGTTGTGTGCTCTTCCGCTGCCATTGCCTCTAGTCTACTATGTGTTTTCTAGTTTTC
TTTGTTTTCCGCTGCGTTCACCAAGTCCGTTGATATTTTCTGTTTCTCATGTCATGCAAG
TTCATCATACCTTTGTCCATTATCCTTCTCTGGTCCTGATTCTTTCTATACAACTTTTGT
GGCCTACTTCCCCATATTGTTTTCAATAGGATTTTCTGGACTCTTTTTGCATTGTCGATA
TACGCCCATTGTGTCTTAGCCGCCGAGCTTCTTTTGCCGTCGTTTGCCACGGACTATGAT
TTTCTACGCAATGCTTTATTCTCTTGATGTGCCATATTCCTTGGCAACCCATCTTCTTTT
GATACTTCTCTTGTATGGTGTCTTCCTCTGATGTACCATCTCTTCGTTATTCCCTTTGGC
TTGACTCGACAGGTTTTGAAGACTCATGTTACGACGACACTCTCAATACGCAGGTTTGGA
TTATCATTTTTTTCTAGTATTACACTTCTTCAAATGCAATGCTATTGCATACGCTTTGCA
TTTGAGAGGGGGCGTTAGGAAGTGTTAGTATTGGTCTAGGAATCATATTAGGCTATGTTT
CCTTTCCTTGTACCAGTCATGTATAAAATATATAGGCCCCATGGGCTATGTAATAAAGAT
AAGGTGCTTACATAACAAGCAGCACGCCCCCCACACACGCCCCGATTCTCCGGACTCTGA
CGGACGCCGAAGCCGGAGGAAGCCACACGCCTACCTGGGGATTGCGACGGCCGTAGCCGC
CGAAGGAAGCCGCCGCCCTCGAGCCCTGCCAACCAAGGGTTGCGCCAGCCCCCCGTCGAT
TTTCCGCTCGGCAGGGGGCCCGCACACCCCTGACGCCGGCCGGGAATGCCAACACAGACA
CCTTACTCCCTGGGGTTGCTGGCTGCTGCCGACGCCATCTGTGTGAAACATCTTGTTCTC
TCTTTTCTCTTCATCTATACAAGATTCAGTTGCAATTCAGCACAATGTTCATCTATACCA
TATTCAGTACAAGCTTCAGTACAAACTGCATGAGTCTCAATTTCTTCAGAGAATAGCAAT
AACGGACCCTCTTCATCCCTCAAAGCCTCTTCTGATTCTGTCCATTTCTTCAGGGAATTC
TAGGGGGCCGTGGACCTGTGGTTATCGTATATTGGTTCGCAGATTCTCCACCTGACAATA
GCTCATCTCTTAGTTCTGTAATTTCTTAGATTTGATGGCCCTAAAAGTATGTGTATTAGG
ATTGAAGATGCATGAGGCATCCCTGGGGAATGGAGATGAATGAGGAAGTACAGAGATAGT
GAGAGATGAAATCCGAACCTGGTAGATCATTATATATTTTGTTCATAAAATTGTGTTAGG
AAATATGCAACTTGTATTTCCAGGAGGCCANNNNNNNNNATATATACATGTACAGGTGTG
TAATATGCAGAAAACCCCTTATACAATAGGGTAAATACACAAGGTTACATGGCTACATAT
ATAGTACTCAAACCCCCCCCCCCCCCTCAACTCATGATGGATTAACAACACTGAGTTTGG
AGAGATAGAAGCCATGCTATGCTCTAGTCTGGGCCTTCGTCAGAAAATCTGCCAACTGTA
ACTCGGAAAGCACATACTGAAGAGCAATAACCTGACCTTGCACACCTGCACGCACATAGA
AAGCATCAACACCNNNATGCTTGGTGAGCTCATGCTTCACAAGATNNNNNGCAATGCTAA
TAGCACCTGTACGGTCTCATAAGAGCAGAGTAGGTGTAGTGACAGAAACACCAAAATTCT
AAAGTAACCACCGTAACCAAGTCACCTCTGTCGTCAAAAGAGCCATAGCTCGCATCTCAG
CCTCTGCACTCAAACGGGAAACTGCGGTATGTTTCTTCGTCTTCCAGGCAAATGAGAGAA
CTACCAAGAAAAACACA