Map Locations of contig_40473 (10653 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_40473

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_56009 1 402 bp None Available Available None
MLOC_56008 1 165 bp None Available Available None
MLOC_56007 1 1968 bp MLOC_56007.1 Available Available LOC_Os06g40818.1, FRAME:+1, EVALUE:0.0, 13106.m04254 protein aspartic proteinase, putative, expressed





CDS Structure of MLOC_56009






CDS Structure of MLOC_56008






CDS Structure of MLOC_56007






Contig Sequence (10653 bp)

>contig_40473 10653 assembly3_WGSMorex_rbca.fasta
CGGAGCCCCAAACAGACTCCACATCTAGCCTCCTGATGAAGAACAGGAAGTGGCGGTGGC
TCCGTCTCATGAAACACGATAATTCTTCCTCTGTGATATTTTTCTCCACGAATGTGATTT
TATAGGCTTGAAAACACACCAATATGGGCCACCAAGGGGCCACACAACACCAGGGAGCGC
CCCAAGGGGGCACCCAGGTGTTGTGTGTGCACCCTGGTGCCCCTCTTCGGTTGTTCTTTG
CTCCAATATTCCTTATTAATTGCATAAAATTCCTTGGAAAATTTAAGCTTATTTGGAGAA
CTTTGATTTTTGCACAAAAAACAACAACATGGCAATTCTATTGAAAACAGCGTTAGTCCT
GGTTAGTTCCATTCAAAGCATGCAAGTTAGAGTCCAAACAAGAGCAAAAGTGTTTGGAAA
AGTAGATACGGTGGAGACATATCAATCAGCGCTAAATACTCCGTCTAATCGCGCCCTCCG
GATCTCGTTTTTTGCCGGTTGGTCCCATTTTTTGTGCCGACGATCCCACGCCGAATCCAC
CATCCTGGGGGGCACTTGGGGGCTCCGACGAAAGGAAAAGAGGCATGTGGGACACCACTG
TCAAGCAAGAAACGCCTTTCCCTCGCAAGTTTCACCCTCGCGCGCCATGTCGATCCCGGC
GCCACCCACCTGCCCACGGCCACTGCCCCGTCGCTAAAAGGCCATTTCCCGGCCGGTTTT
GCGGCAGCCTTCATCTCGCTCTCCTAGGTGAGATTTCCACTCCACGCACGCGGGGATGCC
AGCGTCTTCCCATCCACCACTCCCACCAGGTGTTTGGTGATTTGCATGTTCGACCATGGA
CTCAGACGACGGAGACGCGTTCGCGACTGTATTGGAGGAGGAGGCCGAGGATGTCACCAT
CGATGAAGTGCACCTCATGATCCTCGACACGCTGGTCGTCCTGTTCGCGAACGATGCTAA
GCCGTGGCGAGGTGGCTCAGCACCGGGCCACCGCAAGAGCAAACAAATACATCAAATGGA
GGGATATTGCATGCTCTACACCAACTACTTCGTCGATGCTGATCTACACGACGAGAAAGT
AATTCGGTGTCGTTATTGAATGGGCTAGAAGCTCTTCCTCAGGATTGTGAACGCCATCCG
GGATTTCAACAACAATTTCATTTGCAAGAAGGATTGAACTGACACGGTTGGATTCTCCTC
AATCCATAAGTGCACCGCATCTATGAGGATGCATGCATACACAGCTCCCGATGATATAGA
GGAATACTATGGACGCATGGCCAAGTCCATCAGCATTGAGTGTTTTTACAAATTGTATAG
GGTAGTGGTGGCACCGTTTGGACCATAATATTTGCGATCACCCAATGTTGAAGACACTGC
TTGGATCCTAGAAGAGAATGCAACAAGAGGATTTCCTGGGATGCTTGGGAGCATAGACTA
CATGCATTGGGCATGGAAAAAACTCCTTCTTTGGTATCCAGGAACTCACAATGACATCAA
CATACTGCAGTGTTCGAATGTCTTTGCGAAGCTTGTTGAAGGTCATGCTCCTTCGGTGAA
CTTCGAGGTCAATGGGCACCACTACAATAAGGGATACTCTCCAGCAGATGGTCCACATTT
GTGAAGACTATCTCAAACCCTGTGGCAGGAGACAAGAAGTCATACTTTTCTAAGTGTCAG
CAGGGTTGCGGGAAAGATGACGAGCGAGCATTTGATGTTCTCCAATCTCGATTTGTTGTT
GTTCGATGCCCTGCTCTCACGTGGTCGAAATCTCAGATATGGAAGATGATGAATTATTGT
GTCATCTTGCACAACATGATCATTGAGAGCGAGCAGGAAGAGCCAATGTTTGACACTGAA
CCATATTTCACGCAGGGTCCTCTTGCAGTTGTTGATCACCAGGTACCGACAACATGGGCT
GCCTTCCTCAATATGCGCTAGAAGATCCAAGACCCACAGGTGCATCAAGAACCGCAGGGC
GATCTGGTCGAGCACCTATGGAGGCTCAAGGGAACGCCGAGGTCGATTTGTTCTAATTTG
TGTTCGAATTATGAGCTTGCTTCGTTGAACTATTTGATTTGTATTGATTTCTGTGATGAA
CTTTGTCATAAAGAATTAGTTTTTGTTGAATTTCTGCTGAATTTGCCCTGAAATTGGGCC
TAAAGCACCGGCTGGGGGCGACCTTGGGCGTCTGCTAGAAACCTGAATCCAAGCGGCGCA
ATTTCATGCCTTTGGGGGGCTCTCAACTGACCTTACATGAAAAATTAACGCATTCCCAGT
ATATTTAACTCTTTTTTTTCAAAAAGCCAACATGTCATGTTACCCGGCAAGCTAGTTCTC
TCACAGCATCTCCACTAGCCCCCCAAGAGGCCCTCCCGGGCAACTTTTTTAGCGCTGACG
GTGCGAAATCGGCCCAGTTGTGCTCCCAACTCCTCGGTTATCGCTAGTTTGGGCCAAAAT
AACAGCCGGCGAACCCGAGCCGAACCTAGCTCCCCGGGGGAGCTTGGGAGCGCTGGGCGA
AGCGAAAAGCCAAGCGGACCCGCTCTGTTGACCGCAACTGAGTCTTTCGCGTTGTTTTCT
CCCCCTCCCTCCTCCCTTTTCCTCCATCTCTCCACCCCCTCTCACCATTCTTCTCCCACT
CCTGCCCTCTGGTCACCATGCCGCCAAATGAGAAGTACACCTTCCCACGCCCCGCCACCA
TTGTTGATTCCATCCAGCCGAAGCAGAGGAAGCCGAGGGCATTTTGAACGACGAGTGGAG
GGCGGACGTCCAGCGACTGGAGGTGGGCGTTTTGAACGGCGAGTGGAGGGCGGACGTCCA
GAGGAGGCTCGACGCTAAGAATATCAGGGATGCGGCGGAGACGGCCGCGGCCGTGGTCGA
TCAGGAAGAGGTGTCCCGCGCGGGGATGATTACCCCGCCCGGCCGAAACCCGCATGTCGC
ATGGAGGGGCCTCCAGGGCGTTGCGTCGGCCACCCTCTCGCCGACGATGTTGTCGTGGGG
GTACGTGCACTCGCCTGGCTACTCCGACGACGATGCTCATGGCGGCTTTAATACCAACAC
CACCTTCTCGCATGGCGTGCCGCAGCGTTCCTCCCTCACCGGTTTCAACCACGACCCGCG
TACTCCCTCACTCGCGTTCAGCGCCGGCCTCAACACCCAGTATAGCTACTCGCTGCCGGC
GTACTCGTCAGCAGCCTCTCCTGCGCCGTATCTGCGTCGTGGCGTCCTTCCATTCGCACC
CACTTTGTCGCTATAGTTTAACTATGCCGACGCCACCGACATGGACGAGATCATCACGAG
CGGCTCCGTCGTCGTCGCGTCGCACCCGGAGTTCAACGCGCAAGATGAAACAATGGACAC
CATCGGGGACATTGATGACGAGCTCGACGATGCCAAGGAGGAGAGGGAGGAAGAGGCGGT
GGAGGTGGAACCGGAACCAATGTCGCACAAGAAGTTGACGAAGAGAAAGCGGGCGGCTAA
TGCCAAGCTGGCCAAACCCCACGTCAAGTGGACTTCCAAGGAAGACAAGTGCCCTCTCGA
AGCGAGGAAGACTGTCAGCATCGACCCGATCACCAGCACGAATCAGAACAGCGACACATA
CTGGGGAAGGATCAAAACGGCGTTCGACGAACGCAAGCTGGTCGACCCCGACTTCATCAG
CATCCACATGAACCGTGGCGAGAAGGCCATGGCTAACCGCTGGTCGATGATCCAGACGGC
CTGCAACAAGTGGTATGACATCGTCGAGGAGGTCGTAGCTCGCCCGGAAAGCAGCGCCAA
CGTCGAGGGTCAGGTATGCCCATAGTTCGCCGGCCCTCGTTTGTCGTGTCGTCGTGTGCT
TTGCTCACATGTTTCGTCCGCCCTTTTGTGCAGATGCTTCGGATGTTCGCCATGTACCGT
GCCAACATTGAGGACCAAGAGTTTAGGTTCCTTCACATGTTCTCCGGGATCGACTCGTGC
GAGAAGTGGAGGAAAGTTTGACTTGCTCTTGACAAGGCCAAGGAGGCCTACAACCCAGAC
GCGCATGCCCCGGCTATGGCAGAAGGGCGCCCAGATGGCACACAAAAAACCGGGGCGGTG
AGGGACGCGGCGCCCTCTGCCCAACGGCTGCAGGCTTCGACCGAGCAATGTATAGCCGAC
GTCAAGAGCAGCGTTGCCAGGAGGAAGGAGAAATCCGACGCGCGGTGGTCAGCGTTGATA
ATCAACGCCGCTGCGAAGAAGAGGAACTCCGATATGGAGTTATTAATGGGGGCAGACACA
TCCACGATGGATGAGAAGGTGAAGGCGTGGTACATAGTACAACGCGACCTCTTCTTAAGC
CAGTTGCTAGCGCTAACGGCGACCACAATGGCGACCACGACGACCACAATGGCGTCCACA
ACCGTGACTGCAACGGCGACCACAAGGCGCCCAGCCACACAGAGCGCACGCCGACCGCGA
GCCCGACTATGTCGACGACCAACAGCCTGGCAAGGCCGACGATGAGCCCGACTACGCCGC
CGCCGACCCCAGCCAGCCCCGCGCTAGAGGAGCTGCACCCCACTGAGTCGGTCGTGTGAT
CCGTTTTTATCCTTTCCTTTTGATCGCCGAACTGTTGGTGTGTTTAATCGTCGAACTATT
GCACTGATCGCCTACTTATGGCATGACGATCGTCTGCGGCGTGTTTTTAGGCAACGAGAA
AGAAGAATTTAAAAACGTTGGCACCTAGGATCGAAATCTGAGGACGCGATTGGAAACTCA
CTATCGCTGGACATAGTAAAAGCCAAACGGTTGGAAATGCTCTCAGTACGGCCTGTTCCA
AGACCAGGCTTCCAGTACTTCTGCTCCCTGTCCATATAGAAGCGCCCGTCACTAGAATGA
GAGAAGCGTCAGTCACCGGTTGCCCATAATCTTGGATCTTCTCAAAGCCGTGTTCGACGG
GATCAGATCGTGCTGCCGCCACACGGCAGGGGTTCACACTTCACAAATCACACGATGCCA
ATCACCAGGCGCAATCACCAATCAATGAACAACCCGAGTTCGTCCCTGCCCGTCGGGGCA
GTGCGGAGAGGGGCCGGACACCCGAAGAAAAACCGACCAAGCAACAGCCAGTGCGCACGG
CTCCCGTCAGGCTAATCAGCCGGCCCCGGGCTATATATATGACAGGATAGGAGGTGTGTG
ATGGACCGTTTAATTTGTGTTCCCTCCACTCACCGGGACCCCAGCCGCCCCACTACCTGA
CGGCCACTTCTGCGGTGGTGCACGCCATGGCCGCCTCCGCTGCTGCTTCCCCTCGCCATG
GCTTCCTTGGCCTGCTGCTCGCCGCCGCCGCCGTCCTCGCCGCATTCGGGCTCGGGGCTG
CCCGTGCCGCGGGGAGCTCCGATGATCGCGCGCTGCTGAGCGTGGCGTCCCTGTTCCCCG
GCCCGGCTTGCCCCGCGACGGCAGGTTAATTCCCGGTCGAGCTCATGATCGTCCCCCGTC
AAGCTGGTCGCTTTTCTTCTCTCAGTCGCTGACTGCCTCATCTAGCTAGTTGACTACGGC
CATGCTTGATTCGCTTGTGTTGTTTCAATTTTTCGGGCTTACTGATTTCGTCTCTGCTTT
GCCACCAACTAATTAATGCGTATGTGTAACGTACGTTACTAATATTACAAAGAAAATTAA
TTTGCATGTTGAGTTTTGATAGAATATCTTACTTGTGAATTACTACTACTATGTGATAAG
CACAAATGTTGGTATACTTGATATGACATTAATTGTATGCTAAATATACCTATATGATAA
CGTCCACATGTATGGTATATATGCATTTCGTCTACACGCATTGATCTTCGTCTATTATGT
TTTGCATGAATCTTAAAGAATCTGTTAGAATTTCAGTGTCATGTAGGCATAGTGTGTTGT
GTGGACGTTAGAGCGCTCGCTCACACGACCCGCAACACGCGGTTCCCAGCTGCGCTGTGT
GGGTAAGCCAGTTCCCGCCCACATAGTCACCATCTAATTCGCGCGTGTGGGTGAACTGTT
CTTCACCAACATGATAACTAGTTAATCACACATGGCAACTATTGTTTGACCACATGTGAC
AAGTAGTTAACCACACATGACAACTATGATTTGATTACACGCGACAACTATCGTTAACAG
ACATGACAACTATAATTAACCAAAACAAAGAAGTTGTCATGCTTTACCACTACAGTTGTC
ATTCCCCAGATAACTAAAGTTGTTGCGTCAGGACATGTGGATAGATTTTACAGTTCGAAT
GTTCGTTTATACATAATCGTGTGGGTTGCTTCTTGGGTATGCCATGAGTAAATTGCAAAA
AGGCACCACAATTATGTAAAAGTCATCAAACACCCAGCAAAATGCATTTTTTCTGGTGGT
TTTTTCCTGAAGCATTGAAAACTTCGCTCCAATTATGGTATTTTTTGCAATTTACTCGTC
ACAGATGATGTGTGGACGAATTTTTAATATGCCACACATGTAATGAATATCGGGATCCTA
AATATATTGGACGCGCATCACCGAAACTATCTAGGTTGTTGAATTGACATCGAGATTAAT
TAGATCTGCTCCTTTAGGTCTTTTTATATAAATATAGAAGATACATATGATTTGTTTTCT
CTAATTTTTGATCGACAGACAGTGAAGTATTATTTTGTCCCACCTCAAATAGTCTGGGCT
TTATATTTCAGAAAAAAATATCCGGACTTCCAAAAACTGTTGGAACAAAAACTTGCCAGT
ATTCTTCCAGGAAACCAATTTTACCACCGTCAATCGTTTGCTCTGGGGTTCTTGTTATGT
TTTATAGGTTTGATAATTTTTGGGGGGTAAATAAGTGTGCACTTTTTTTGGGCAGAAACA
AGTGTGCACTTTTTTTAGGCAGAAACAAGTGTGCTCTTTTTTCTGATACATAAGAAACCC
TATGCTAAACTTTTTTTTTTTAGAAAAACGCAATGAAACATTATGTAACACACTGAAATA
AGACATGTGTTGTCCAAAACTAAAAGAGTAGCATGAATCCTAGAGCAGTGATGGACGGTG
GTTCCATGCATGGCTAGAAAGTGCTCCCTCTAAAAATGTAAGACATTTTTAAACACTACG
ACTGAGTAGTATTCTTTCAAGACATATACGATGCTTAAGTTTATTTTATTTTAAAATCAA
GGCAAAAGACTTGCCTCCTTCATTAATAAAAAAAAGAGTTTAGAGGAGTACATAGAATCG
GCTGACATTTCCCTTGGGAAATAGGGGAAAACAGTCCCCGGATTCCGATAACTTATGTCT
TGGGTGCTTAGTCCCCCTTGTAACCCAGGGGTTTTGGCCTTCGTCTTGAATAAGATCAAC
TTTTTTAACATGATTAGCAGCGGGTATAAGTAATAATCCAACAAAAGGCTGGTTGCTGCA
GAACAGCTGAACTGAACAAAAATACCTTAGTTGTCTTTTACTGCCGGTTCATTATCTGGT
CGAACGTGGGCCAACTACAGAGCAAGTAGTTAGAGTGACACTCTGACCAAAACGCACCAC
CAGTACAGATTTCCTACAATTCCTGATAACGATGGTTCGATTTCATCGATTACACCTGTA
ATTTAAATTCTTCTGTTACCAGAGAGAGCTTAATTTCCGTTCTGCATATTACTCCATTAT
CTAGCTTTGGGATTCTGATCCAAGCCGAACATGCCCCTAAATATGCAGAGCACGGACCCA
GCGCTGCGGCGTCAGCGAGAATGAGGATCGTCCACCAGCACGGCCCATGCTCCCCTCTAG
CCGATGCGCACGGGAAGCCGCCGGCCCACGACGAGATCCTCGCCGCCGACCAGAACCGCG
TCGAGTCGATCCAGCGCCGGGTGTCGGCGACCACCGGCCGGGACAAACTGACGAAGCACG
CTGCACCTGTCCAGCCCGGGCCAAAGAAGAGCCCCGGGATTCACCCCGGTCACTCGGCGT
CCTCCTCCACCCCGTCGCTCCCGGCGACGTCGGGCCGCGCGGTGAGCACGGGCAACTACG
TGGTGACCGTCGGGCTCGGCACGCCTGCGTCCAAGTACACGGTGGTGTTCGACACCGGCA
GCGACACGACGTGGGTGCAGTGCCGCCCCTGCGTGGTCAAGTGCTACAAGCAGAAGGAGC
CGCTCTTCGACCCAGCCAAGTCGTCCACCTACGCCAACGTCTCCTGCACCGACTCCGCCT
GCGCCGACCTCGACACCAACGGCTGCACCGGCGGCCACTGCCTCTACGCCGTCCAGTACG
GCGACGGCTCCTACACCGTCGGCTTCTTCGCGCAGGACACCCTCACCATCGCCCACGACG
CCATCAAGGGGTTCCGGTTCGGGTGCGGGGAGAAGAACAGCGGGCTGTTCGGCAAGACGG
CGGGGCTGATGGGGCTCGGCCGCGGGAAGACGTCGCTGACTGTGCAGGCGTACGACAAGT
ACGGCGGCGCGTTCGCGTACTGCCTCCCGGCGTTGACGACGGGGACAGGGTACCTGGACT
TCGGCCCGGGGTCGGCGGGGAACAACGCGAGGCTGACGCCGATGCTGACCGACAAGGGGC
AGACGTTCTACTACGTGGGCATGACCGGCATCCGCGTGGGCGGGCAGCAGGTGCCGGTCG
CGGAGTCGCTGTTCTCCACGGCCGGGACGCTAGTGGACTCCGGCACGGTGATCACGCGGC
TGCCGGCGACTGCCTACACCGCGCTGTCCTCGGCGTTCGACAAGGTCATGTTGGCGCGCG
GGTACAAGAAGGCGCCGGGGTACTCGATCCTGGACACCTGCTACGACTTCACGGGGCTGA
GCGATGTGGAGCTGCCCACGGTGTCGCTGGTGTTCCAGGGCGGCGCGTGCCTGGACGTGG
ACGTGTCCGGGATCGTGTACGCCATCAGCGAGGCGCAGGTGTGCCTGGCGTTCGCGTCCA
ACGGCGACGACGAGAGCGTCGCCATCGTCGGGAACACGCAGCAGAAGACGTACGGCGTGC
TCTACGACCTCGGCAAGAAGACCGTCGGCTTCGCCCCCGGATCCTGCTGATTTGACAGGC
TCGTCGTGATTATTGAATAACTAAGCTGCATCCACCAAATGGTCAGTGGCTATACATAAC
TTTACATATGTGAGAAATGCGTATACACCAACTGTAAGCGATGGAAAATGGAATCGGTAC
GCTTCGATACAAGTAAAAAACAGAGAAGCGGTGACACATTGACGCTGTGTTTGTGATGTA
TACAAGCAGATACACAAAGGGCATATTTGATTGTCTTGGTTGCGTCAGATTTGTGGCCCG
CACGCTTGTTAAACCAACCCTCGGCTTAACGTCACGTACAATGCATAGCCTCAGGATGAT
GCCCCGTATATCATGTAGAATCGGATGTCATAAAAAAATAGGTTCGGATAAGGAATCGAG
ATCCTATGCACGAGCCGGGTGCTTGAAGAGAAAATGTGTGGTCCGGCGTAAAAAGCTGAA
AAGTTAGAGTGGAAAGTAGAGATGCATGTATATTAGAATCTTTATTTTTTATTCTTTGAT
AAGGCATCCTAATGGTAGCTTGCATTGGAGAGAAAAAAAATCAATATAAATGTCTCAAGG
TACTTTTTATCATGGAGCATCTCTATCCATATGCCACCTTTGCACATGCCCTTAGTCGGC
CACCTTTGCACATGCCCTTAGTCGGGTGTTTCCTCGGAGGTAGACTCCAACGACGCAACA
TGGCATGATATTACATGCATTGGAAAGCGGGGGCGAGGGGGGGGGGGTTGTTCGGCTTCT
TACAGCATCTCTAGCACACCCCGTATAACGCCGATCCGTAAAACGCGTTTACAGTTCGCG
GAAAAATGACTTTACGGGCCAGCGCGGCGTGGACAGAGCCAGACCCCGCAAAATAAACCT
GTCAAAAGATATTCGCAGAAGATGCTCTTTTACGAGTCGGCTCGAGCTGCGCCGGAGTAG
ACCCCTTAAACTTAAATTGTAAATCGAATATTCGCTTACATTTTTTCCCCACATCTTCTT
CTTCCTCTCGCTCGTGTCCATGGTCAACTAAGTTTTTTTCTAAATACAGAGTCGTCGATC
CCTGAATCCATCCACGAGGTAGTTAGGTAGCTCCTTCGTCCACGAATACATCCAGTAGCT
AGCTAGCTAGCTCCTCCGTCCACGAATCCATCCACGAGGTTGCTAGCCATGAATCCATCC
AGGAGCTAGCTAGCTCCGGTGTCCACGAATCCATTCAGGAGCTAGCTAGCTAGCTAGCTC
ACATCATGGAATCCATCCACGAGCCTGGAGCTAGCTAGCTAGCTAGCTTCCGCCGCCGAA
GCCGAATCCGGCCAGGACGAGCGGGGAAGCCGCCAGGACGGGCGGAGCGGCGTCCGGGGA
CGGGCGGCCGGAGTTTGGGGACGTCCCGGGCGATGTCTGGGGCGGCGTACGGTGGGCGTG
GACGCCAGACACGAAAGTTTCTGTGGCAGTTGGGCTCCCGCCAACTGCTTTCTTTCGATA
CACGGCACCGTAGAAGCGGACGCGAAAACTATATTTTTGCAGATCGGGAGGAGCTTTTTA
CCGCGCCCCGCAAAAATATTTACGGGTCCGACGCGTTTGCGGGGTCTGATTGGGCAACCT
TTTTCACGCGGACTTGTATTTTGGCGGTTATTTTGCGGGTCGGGGCACTATACGGGGTCT
GCTAGATATGCTCTTAGAGCATCTCTAGCACAC