Map Locations of contig_40447 (9948 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_40447

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_55982 3 5974 bp MLOC_55982.1 Available Available LOC_Os02g50840.2, FRAME:-2, EVALUE:0.0, 13102.m05772 protein BAH domain containing protein, putative, expressed
MLOC_55981 1 1095 bp MLOC_55981.1 Available Available None





CDS Structure of MLOC_55982






CDS Structure of MLOC_55981






Contig Sequence (9948 bp)

>contig_40447 9948 assembly3_WGSMorex_rbca.fasta
ATATATACTACGAGTTTAATGTCATAAACAGTAAGAGTTTTTTTGTAAAATCACCTCGAT
GGGTTTTCCAACGGAAGCGATAGCCTCTTTATTATTAGAGATAAAGATTAGGTATAGATA
GCTATATTTTAAAATATAGATTTATTTATTTTGTTTCGTATTTAGTTGCGAGGAAATATT
TATATGCCTCGCATGTTGTGCTAGTAGTAGTAGGTTTGCTAGGTTTATTACCCGGTGAAC
CACCAAACAACCAACTTGACAATCGAGGGAAGAAAAAAAACTTGACCCATTGCCCTTCTC
CATTCATGAGAATGGCCCATGTTCCATTGATAAAGTACATCGTGAATCCCTAGGGCATTT
ACTCGCCCCGTTCGCGCAGATACGGGTGGTGCAACAACCACCGACTCACCGTGCTCCTCC
ACGTGCTCACAATTCGTTTCTCGTACTGTGTGTTTCGGCGTTGGAACATGGAATTTACTT
ATTTATTTATTGCTCGTGAGCATTACTAGTACAGTAGTACTCCCTCCATCTCATCTGACC
GGTGTATCTAGATCGTAAATTTGACCAACTTAATGATAAGTATATATTAAAAAAATCATT
AAATTTTTTAAATTTTTTATTTTCCAATAATATAGTTTTTATATTAAACAATAAATTTTA
TCTCTTCCTAATAATAAAACACCGACGGTTTCTGTCGTCCATCATGATCATTTTGCAAAA
AACACTCTGTAGTTTCCCAAAATCAACCCGCAGTCTGTCTTTAAGTGACTCTGGACCTTT
TTTGCATTTTACGCAAAAACCCCGACATTTACGCTAAATAACCCGCAGTCCAGACTTTAG
ACACAACGAATCATTTTTTATCACAAGTCACTCCGTAAGATTTTGATTTATAGGAGGGTG
AACTGGAAATAAACTCATACGCTGTGATAGCCTGCTGGCTAGAGCATGCCCCTCTTACTC
GGGACACCCGGGTTCAAATCCTTTCTTCAACATTTTTTTTTTGCTTACCTTTTCTCTTCT
ATTAGGCTGGTTCACATCAAGAGACAGGAACTTCTGTTTATTTTTTTTGCTTTTTTTGTT
TACCAAAAAAGATTGCTCCGATGGCCTCTAGATTAGTTCATCTTGATTTCTTCCACTGAC
GTACGATACTGTGTATCTGGATGTGTAGCCTAAATNNNNATCTTTGGCTACTTAAGTGTG
TTTGCATTAATTTGTAATTCTTAGTTCATTAATAATATAAGTTCACAAGACATAATTTGA
ATTGTTTGAAATACATGTACTCAATATTCTTTCATGCTTTTATTTTTTAATTTGTTCATG
AAATATACATCGAGTTAGTGTATACTCCCTTTGTAACTAAACATACAGAACATATTGAAT
GTTTTGCTTAAAGAGAGAAAGAAAGACCTTAGGACTAAACACATTTAAACACATCATCGT
TGTGTTAGTACTGAGGCCACTGTCGGCAACACAAATATGATTCCATGTGAAACTAAAAGA
CGTGGGCCTATTGAGGTCTTGAGTCGTGGTTATTGGGTTAAAAGCGTGCGTTATTTTTTT
TTTCCATTGCAACGCACGGGCTTTTTTGCTAGTATAAGTAAAATTAGCAATCTAGGTACA
AGTACGTGCCTTCTAAACTGTCACGGTGGTAGTAGTAAAATCAAGGAACACCGAATTCCG
GCGAAAAATATAAAGAATGTCGAAATGCAAAGAAAACATGAAGTGGGAAAAAACCGAAAA
ACGTTGGCTCCCACGCGGAAAATAGAGATGACGGACGATGTTGACGGGAACTGGGTCGAC
GTAGTACTGTTTGTAACAGGGGGTAGCTTTCACCGGGGAGCTGTCGAGAGGGACGCGTAT
TAATGATGGGGAAATGACCGAGGAGAGGGGGTGAAGGGTGATGGATGGATGGAGCCCAAG
TCTAACAAGACGGGCAGCTGAGGAAAGCGACGGGAGACTGGACTGGACACACCATACCTA
CGTGGTGCGACGGGGACGGGAAATGCCCGGACGCGGAAAGAGAGGGGGGAAAGAAAGGAA
GGACGGAAGGGAAAGGGAGGCAGCGGACAGGGACGGGGCAGCAGTCGCGTCACGGGCCAC
CCCACTGATCGCGACCGTCTCTTCCTCCCTCCCCGTGCCTGTCGCCGTCCCTCCTTTTTT
TTCCCTTCGCTGCTGCTTGCTTTTGCACCTCCCCCCCACATCGCCGTGGTGGCAGTGGTT
TCCGTGGTTAAAGGGGCATCCTGTCCTGCCTGCCCGTGGGGGAGGCTTCTCTTGCGTCTT
GGTGTCGGCCCGTGAACCACCACGCACACGCGTCGAGCGACATGTATGTATGCCCCCCTC
CTGTTCCGCTTCGTCCTCGCTTGCTTTCGTCGCCGGGTCTCCTGCTGGGGTGGTCATGTC
AGACCGTAGAGATGTCGAAATATGACAAGTAGCAGAATACAAATGGTTTACTCATGGAGA
TCAGCAACACGGTCGCCATCGTCCATCAGCAACACGACCAACGGAGACCGCAGATGCAAT
GATCAGCGTTACATTTACTTGTGCAACAGATGACACCAAGTAGATGATCCAAATTTACAA
CAGACGCGCGTTCGTGAGCAACAAGATGCAGCTGCAGACGTGCCCAGCAATGGAGCAACA
AGTTGCAGGAAACATAGGAACCAACATAGAGATAACAGGGTCAGCCACGGCAAATTATTA
TGACTTCCTGATCTACTGATGCAACACTTGCCCGCAGGGCAGGATACATGTCACGGCTAA
ATCATAGTATGTTAAAGCTGCAGATGTGCCCAGCAATGTCAAAGAGACGGTTTATCATAA
GAAACTTAGAAAATGAAAAGAAAAAAGGACCACCGGGACTAATTACAGCGGCTTGAGGTG
TTTGAAGATGCCAAGGAGCATTACCGTTCCATCTCCAAACCCATACGCTCCTGGCAAAAA
CAGAAGAAGCAAGCCTGGCAGGTACAAAACTCTAGCAAAGCAACTGCTCAAGCTGAGGAA
AACTGGTTCCAGGAAAGTATGAATATGGTTAACATTTACAGCAATTACAGCCATGTTTCA
TTCCTCCCACAATCCCATGTCGTCACAGACATGAATCCATGTGTGAGTTGTATATCCCAG
CCCACCAGGGTCACCCAGGTGCAATACAACGCCTCACTTCCACATGCAGTTGCCTCTGCA
AATATAAAGCACCCACCCGCCACTGGTTAATTTTAACCCAACAAGAAAACAGGGTCTGGT
CTTTAAAGTTGGATTTCTAGGTACAAACAAGCTCACCAGACAAAAGAAGTCGATGCGAGG
TCTCGCCAAAGTTCCTACTGCCATGACAATTGCTTGTATGATGATCTTTCAGGATCCCAA
CTGCCCTCGGGTTCCTTCCTCTTTATTCCTACACCAGGCAATTGGTACATTCTCGTTTGC
TCCTCCACAAAGGCCTGCGGCGGCGTCATCAAAGTTTGTCTAACCGATGAAAGTATCCGT
TCGTCCTTCCCTTCTAAATCTATACTCCCAGGACCAGAATTAAGATCAAACCCTCCTCCT
GGTCTTTTCCATTTCCAGTTACTGTCGAGTCCATCACTGCTGCTACCTTCAGGACGGTTT
ATTGCATATTGCCTCACATGTTGGGGAGGTAATGCACCCGTTGACCCAACAAGTGCCGGG
GCAATGGTTGGAAAGAATGGAACTCCTGCAGGTGCAGAATTGGTGGCATATGACGTCGAT
CCAATTGGAAAACCTGTTGTCTGAAGGTGAACACTGGGAGTGAAAGGAAATCCTGCATAT
TGATATGCAGGAGGAGGGTGAAACACCATGGTTGGTGGTGTGGAAATAACTGGAGCCCTG
CCTGAATCACTTCCGAATTGGCTGCTGTCTGCAGCAGACACAATCATCCTCTGGGTTCCA
GATGCTGTTTCAATTGGGTAAGGATGTTCTCCTCTAGCAGGCAAAAACGATTGCATAGCT
ACAGGAGCATATGGGTTGGCAGAAGCAAACCATGGTGACATGTTATTGATTTCAGTGCCG
TTCACTCTAAGACCAGCAACTTGAGGCAGGAAAGGTATGCTGCTAGCACCTTTAGATGAT
AGACTCCTTTGTGCAGGTTCTGTACTAGCTTCATCAAGGCTTGGTCCATTATTGAGATCA
AAGAAGTTCTTTGAGCTATTCATACTGGTACTCGGTAAACCTCCTGGCAAGGATCTTGCT
GGCAACAATGTGACTTCAACTCTGTTGGAAGAGTTTGAGATAAACTGGTTATTCTCGGCA
ACTTCATCAGACCTATTCAAGTCAAGTTCAATGCCGGCGCTTCGCACAGGACCATCACGA
CTTCTAGTGTTTCCAGATTCAGATCCAACTGTCTGAGCAGAACTCTGTGAGAAATCTTCC
TCAAGAATCTCTTCATCTGCTACATTCAGATCAATGTCAAACGCGGGGCGAGACCGCTTC
CCGGCACTATCAGATCCTGCAATATCAGGTGCAGTCAGAGATGCCCCCACAACCTTTCGT
GGTTCTGCAGGACGAAATGCACTTGTAGCTGCTGAGCCTTTCCACCCAGCCTCAGGCTTC
ACTCGTAGTAGATTCTCAGGAGGGACAAAAGGTCCTTTAGCTGGAGCTGCTACTGTTATT
GGGGCAGGCAGACCACTTAAAACAGGTGATACGAATGGAGAAAGACCAGGTACAGGAATT
GCAGAAGAACATATAACAGGAGAGGTAACTTGCTCAGAGTGATTCCCTTCATCCCCAAGT
TCATTCAAATCAAAATCAAGCTTAGCAGTACCATTTGATTTGGCCTTGGCAGCAATAGAA
GTACCCTCGTCTGATGAGGCAAGAACCTCTTTTCCGCCAACATCATCGCTCAGCTTCTTT
GGACTCTGCCTTGCATCATGCTCAATATCCTGAGATATGATAGGTCCAGATTTTACTTGA
CTACTCGATTCACTGGAACTATCCTTTGATTCTTTAATCCCATTCGGCACATCAACTGGG
AATACAACTAGCTTGTTAACATCAGCTGAAGTGGAAGAAGGCTGCTCCTTTTCGTCCTCT
TTTAGCACTGTGTTAACACCCAAGTCTTCAGCCTTTTTGGGACCCGCAGCCAGTGGACAC
GCTGAAGACTTCAAATCAAATTTACCACCAGCGCTGCCATCACGTGTATCGATGGCTTCC
AACTGATCTAGTACACCTACAAGCGGCTTTTGATCAGTTGGCTTTAACAAGGCATGGGGC
TGCTTATCAGGGACAGACAATTGCAACTCCTCAAGAGGGAGCAATTCTGGCGTGCGATTA
GAAACGGCTGAATTGCATTGACCACCTAAAGTAGTGCCGACAACATCAGGGCTGCTTATG
CGACCATCTTCAACTGGCCCACGGCTGGAACATGCATTACGATCTTGACCTGCAGACGAA
TGCATATTAGATTCCATATAAATATTGATAAAAGCAGACAGGTAAGGGAAAGTCTTTATC
ATCATCACCTTGTGAATCAGCCCCAGGTACAGGAAGACACTTATTTGTGCAACCCTCCTC
TTGGTTTTCAGTCTTTGCTGAAAATTCAACGGCATTACAGTCTGTACCATTTTGAGGTGA
CAGCCCAGTAGTCGTTGTGATTTTGTTGTCGTGCAATGACAAGTGTGCCCTCTGGTTACG
CTCCTCCTTGGCAATCAAACAAGGATCAGCTTTCTCTTGCTTCACCAAAGTGACTTTCTG
AACATCTGAGGAACCTTGACGCTGAGACGGGGCTATGTCACTTTCTACTTTTAACTTCTC
AATGCTGTCACCTTCACATCCCACTTCATCTGCAGACGAATTTCTCGGTGAAGCTGATGG
AGAAATTAATTCAGATTTAGATATTTCTCCAGCCACACTGGCAAGAAGGTTCATTGCAGT
ATCATCCCCAGCTTGCAGAGGGGGACCAGCTTCAGAGTATTTTATTTCAATTAAAGCATT
CATAGGGTTGAATGAGTTCCCCTTGGTTTCACCTGAACAGACTCCTTTCTCATTCACTTG
CGACAAACTTGCAGGCCGTGATGCACATGCCTCCTTAACAGCTTCTTCAGTACTCCTGTT
GCTCTCCAATGTAGGGAATGCTGACTTATCACCTTCATCAGACCCTGCAACCCCTTTTAT
CTCATTGCTATGCCAAGACTCAGCATTAGCATCAGAAGCTAAGTGAGGTCGAGAATTTTC
GATCTTCATTTTCACCCGCCGACCATTCTGTTCATGCTTATCTACAGGAGAGGAAGATCT
ACTCCCTGTAACAGACGGGTCCTCAAATGAGCCTCCGCTCACACTTCTAGCAGGACTACG
GCTAGGGTTTGGAAAGCGGACAATCAATCTATGGCCATTACTGTTATCAGAGGGTGTGTC
GCCCCCTTTTTCAGACGCCATTCCAGATTGTGATGATTTTTCCTGGAACGACGAACGATC
GAGTGAGGTAGATCTTCCTGCAGTAGCTTCTTTTTGTATCCCAGAACCAAGACGGACACT
GTTTGCCCTTCGATGGACGCGTGAAGAACTCCCGGAAGTTTTACTGGCATTGCCAGAAGC
AGCTGTAGAACTTCTTGCATCCTCCTTCCAAGGAGAACCAAATGTTTTTGCATGATCACT
GGAGCATGAGTGACTATTGTTCAGTGATTGGCTTGAACTGCTGCTTTTCTCCTCTTTCAC
TGTTGGCAACTCAGAACCACCAGCCGATTTGCATGGTGGATCCTTCGAGTTGGTTGCAAC
ATTTGCAGGCTGCATGTGTTGCAACTTCGAAGAGCCAGAAGTGAGCGGATTCGACTTCGT
AACAGCATCAGATGCACCAGGTCTAGCAGTCCGAGATACTGGGTTTTTTGGACTGGCCTC
ACTTGAGGCGCTTCGTCTGTTTCCACCATTAGAAACTTCTGCAGCTCCCCCTTTGCCTGA
CCAGGAAACAGCTTGACCAGATACTACAGTTTTCGCCTCATTTGACTTCATTTCAGCATC
AACACGCTTTTTCCAGTTCTCAACAAGACACTTCGCCCTCTTCTGTATCTCAGCATTTTT
ATGGCTACGCAGATGATTGACAGATTTCCCAATACTGCAACTCTGCAAGGCATTCAAATT
GATAGGCAATCTTGAGAGAGCACGAAGCAGTGCCATGAGAAATTCTTCAACACGCTTATC
GGTTTCTTTAGGACTACCCCCTTCACCAGACTTCCCCTTGTGAGTCTCCTGAAGCCACTC
ATTCAAAATAGGAAGGCCCCTTAGTTGCACAAATCTCCCGAGGCAATCAGGACTTTCTGT
AGCTGCAATAATATGTGCAAGCACTACTCGACCACCAAGGTCTATCTTCCGTTCAGTTCG
ATCAAGTTGCATGAACTGGACTAACTTCTCGACTGCTTCAGCGTGAGGAAGCCCGCCTTT
TTCTGCGAACTTCGCAATAAACTTTGTAAATGCATGCTTCATATTTTCTGCCTTTAAGTT
CCCCAGTTCACCTTCTTCGACCTTAAGGGGGCGATCACGGTCTCGCGTAGCTGGATCAAT
TCCTTGCTCAACTCTCTCCCTCTTCTTTCCTTTAGATAAACCACAATTTTGTCCATCATC
CAAACCGGACTTCTGCTGGGCAGATGACGGACTATTTAGCCGCTTCGGTGAGCGTCCACT
TGACTGTACTGCAGCATGCATTTCTAACCTTGTTCTATGCAGAAGTCGGTTTACTTCTTC
CTGCCGTTCCTGATTGTAGGACATACACATAAGCCATAGAGTATATAACACAGAAAAAAG
AGGAAGGTAACTAAATAGCACTTACATTAATATAGTCTTTGTCTGTAAGCCACCATAAAC
ACTTGTTGTCAATATCATATACACGCCGACACACAAATGAAGAAATTCCGGCAGGCAGCT
CAACACCTTTACGTAAAAAGGCAACTTTGCAAGGATGTAGTAGAGAGACAGCAGATGTCT
CGTCCTGGTGGAATGAATAGAAGATCTCGTTTGGTGCAGCGTTGAGCTGTATCGCCTTGT
TAAGTTTGACGTCAGCAGATCTATAGAGCCAACTTACACGTAACTTGGGAAAGCCTTCTT
CTTTTTTCTCAATCCAGCGTATCAACCCAATGAAAGGCGGAACATCAACAGCCTGAAAAA
GTGCACAATCTCCAACTCGGAATTCACGCCCGTCCTGTAAAGCAAATTTGTACTTCTGTT
AATTGTCAAGAAACAAAAAGAACTTCATGTCACGAGGACAACGCTGAAGGAGATAGTGTA
GCACTCGGAGAACATGTCAAAGCAAGAAGCACACTTAAGCATAACCGAACCGGAAATAGA
AAAAAGTAACTCTCCTTGCAGCAGCCAAACAGCTAAAATAGTAGTTCATTATCTAAACGT
GTCGCTTTGCAAAGTTAGCAGACGTTAGTGCGACAACATATATTTCCTTAAGCTGCCAAA
TGCGGGAAAAAAACATTCCAGATGAGGCATGCTACAAATGTTAAATGTCAAGTATGTTCT
TATAAAGAGATACTCTGACTCAACGAATTAATGCACGGCAAGCATGTAATAAAACATTCA
TAATCAAATTGGAACGGCTTCCGGAAATGGATAGTACCTAACCGTTAGAGCACAAAATCT
GAAATTTCCATGATGATTTTTAGGCAATGTATAATGCTCACAACCAAGTCTGAGGTTTGT
TTTCTTCATTTCTCCTATTTTCCTTGTTTAAATGGAAGATAATTCCTTATTGCCACCTTG
TATAGGATTAGCAAACAAAAAAACAAGCAACTAGGGATATCAAAACAGTTGGCAAAATGC
GTTATCTTAATGAAGTCGAGAAGATGACACGACTTGCACCACGTGTAAACGCCTTGAAAT
GATATATCATCACTATCCAATAGACCAAAGATATGATCCAAACAATTCTTATCATGCGCG
CAACAAGGCGACATCTCTGCACACGCCTTACATGTGGAGTGCCAAAATTCTCACAATGAG
GTGCCAAGGAATTCAATCCAACCATACAAAGACAACCTCGTTGTACCGTTTAAATGATAT
GATAGCTCAGCCGTTACCAAACCAAGCGCACAACCAGCCCGGCACAGATGATGTATATGT
ACACTCAGCCAGGAGCTTGGCAGGAACGCGAGACTAAGGTAACCTCTCAACAAGGCAACA
AATTCTAGTTGCTTTCCATAGATTAAGTTTTTGAAGCAGAAATGATAGCCATCTGATGAC
TCCAGCAGCATACTGAATTTGGTCTAAATTTGGCGGAGCTTAGCAAATCCCAAATTGATA
TATCCACCAAAGTATGAGGCACCTTTAGGAAGGAGTCTGCTGAGGGCGGACGGGGTGAAT
CGGCGGCCTCCTGCTTGTGTGGTGCTGCCGGGGGAGTCGTCGGTGCGGGTGGATAAGAGG
TCGTCCGGAGCGGAGGAACGGAGGAGCGGGGATGAGGAGGAGGAGAGGCTGGTCCCTTTG
CCGGTGGTGGAGCTGCCTCTACGCGAGTTGCCGGCCACATGTGCCGGACGAAAGGACGCC
GGTCGCCGCACCCCTCACCGCCGCAGCCTTGGCGCCGCCCATGCATAGCCGCGCATCTTC
CCAGCCGCCGATCCCTCCTGGCCGAGTCCTCCCGGCGCCGCGCTGCACCATCACCAGATC
ACCGCCGGCGGTAACCCTAGCTCGGATCCGCGGGGCCTCCCTCCATGCGCCTCCGGATCA
CCCGAATTCGAGCCGATTCCGACGGAGCGCCTGCCCGGTGGCCGCAGATCGGGGCTCGAA
TTCGATCGAATCGGCTCCGGCCGCGGGGAGATTTGATCGGGAATTTGGGGATTCGGGGTC
CGACAACGGGCGGGACGGACCGTCTCGATCTGCGGCGGGGCGGTGGCGACGGGGGAGGAG
GGGAGGGGGAGAGAGGAGGAAATGGCGATTTGGGGGGGGAGTCGGAGGAGGGAGACGGGT
ATATGGAGCACGGCACGCGGAGACGGGGGAGCGGGGGGGATGAAGAGG