morexGenes - Barley RNA-seq Database

Contig contig_40436
Source Contig contig_40436
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_40436 (7335 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_40436

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_55968	1	1290 bp	MLOC_55968.1	Available	Available	LOC_Os12g38140.1, FRAME:-1, EVALUE:5e-36, 13112.m03927 protein expressed protein
MLOC_55971	4	1312 bp	MLOC_55971.2	Available	Available	LOC_Os03g18150.1, FRAME:-2, EVALUE:4e-157, 13103.m02174 protein protein phosphatase 2C, putative, expressed
CDS Structure of MLOC_55968

CDS Structure of MLOC_55971

Contig Sequence (7335 bp)

>contig_40436 7335 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCCCCCCCCATCTTGAATTTCACGCCTCAGGGGCCGAACGATTGAAGATGCT
CTAACCATCCAATAGGTAAATTCATGTACGATGGCTATTACACTCATTTTATTTTTCTCA
TAAAGATTACTCCTAGCGCTGTCTTAGGTAAAGGGTCATACGAACATATTGAAATCCGGT
GCCCGACAAGTAAGATGACATCGAAATCCCAGGATCAAGGAGGATTGCGACGAAATCAAG
TCCCTGCGCTCCCGTTGTAATGAGGTATTTTCCTTTGCAGTTACCTCACACGTCATCGGG
TCAGAGGAATAATGGTGTATCCGCTGTTCAAGGAGTTTGATTGTTTTGAAAGTTTCTCAA
AATATCTCATGTGTGTATGGGTTGTATATTTTTGTAGGTGCTTAACGGGTGTGTACAAGA
GTAACACCAATTGTGTGATCCATTTTGTCCGCGCGTATCCATCGACGTAGACTCAAATGA
TGACCATCACATGTCTGCATAGATCTATTTCACGCGTAAATTTGGACCGGATCTGCGTCG
TTACGAGATGAACCAGACACACCCCGCGTCCTCTATGCGTCCGCCGTGGGTACACCTGTC
AGCCACACAATCACCGCCCGTGATCGTATTAAATGCGGCCACCTAACACGGGCCCACCTT
GCAGTGGTTGGAAACTGCCATCATCGTCCTTTTTAATTCAAGCGTGCGGCGGGGCCGCCC
TCATCCACGTGTGCTTCCCGTCCCCATTTGGTCACACTTGCTCCCCCCTCGGCGACCAGA
AAACCTTGCCCTAGCCAACTCACACCATCATCAGCCATGGGCTTCTTTAGCAAAGGTAAG
GGCAAGCTCACTCGTGTTGCTAGCTCGTCCCGGTCGCAGGCGCCACCTCGCCGCGGTGCG
TCATCTCGGGAACACGAGGGCCTGTGCATCCCAATTCACCAAGCTCGGTGGCATTAGCAC
TAAAGTCAGGCCCTCCCCTACCCAAATGTCAACCTCCCGCATGGTTGGCATCTCGAACCC
CACCACATCCTCTCTGTGTGTGGTGCCCCCGTCCTCGCGGCGCATGCGGAGGAAGTGTAC
CGGCGGCTCGAGCTGCTCACCTTCGACCAGCGGCGGCATCTAGCCAACATGGCCGACTCC
CCAAACTGGGAGATTTGGTTTACCATGGAGCACGAGCGGGAGCGCCTCCACGGCGTCCAG
CTAGATCCGACAGTCCCATCACCGCCCCGTGAGGTGAAGCCAGAGGAGCAGAAGGAGAAG
GCTACCTACCAGGCGCCCTTGAGGATGCATCGACGAATGCCATCAAGGAGAGTAGGCGCG
ATGAGGACGCGCACTGGGAGCGCCTTGAGGAGGCCCGCGTGCGTCCTGCCTCTTCCTTCG
TCGACGCCTCCCACGCTTGACGAGCCTAAGGTCGAGGCGGAGGAGCGCCAGCCAGAGTGC
TATGAGCGGACCGGCCAGCTCCAGGTGTGGATGTCCGCGCCTCCCATCTGGCTCGGCACC
ATGCCAGAGCAGGACACGACGTATCTCCTGCACTGCAAGATGCACATGCTAGCAGACAAA
CACGTCCAAGCCGACACGTTGATGAAACTGGAGCGCCGCTGGGCGTAGGAGGAGGAGAAG
CGTCAGGAGAGGAAGGAGGAGGAGCGATCCTGACAGCCTATGCCCCAGCCCCGAGCGCTG
TCGGCGCAGGACGCTGCTCATTTATATTTAGTTATGTTTAATTAAGTTTATTTGAATTTC
GACAGACTGTTGACTTGTGTTTTAAATGTTAAATTATAATTGTTTGGACGGTCTTTTTTT
AAGTTCATATTTGAAATTTGGGTTCAGGCCTAGGTTGGATGAGCTAGCCAACCCATTTGT
AAAATCGGACACCAGCATTCATTTGGCTGATCCAAACACATACAAACGAATAAAATACGT
GTTCGGCTGATTCAAAGAGATAAAAATAAATAAAATGTTTTTTTAATCGATCCATTGAAG
TTGCTCTAATGATTGTGTGGATGCGTGTAGTGTGTGTTGTGTGTGTGAACTAGTACAAGC
GCAAACGCTTAGATACGCGTACATACATTTATCCTTATGAACACACACATGCATACCCTA
TCTTTATGAACACCTTCGAGAGACTGACCTGACATATCATATTGAGATTTACCAAGTCAT
CCTAGGCGTCTCGTCGTCGACGATGCATATCGCCGCAAATTTTAAAATAAATTAAGAAAT
AATGCAAGTATCAAACTTGAATTCTAATGGATTAATAGTATCACTGTCCATCTAACCATC
CAACCATATATTAATTTGCTTTTAGATGTCCTTTTTTGAAAAATAAACTAACCGGTATTC
TTTGGGGTGGTAAGGTAAACCACATGCCCAAAGGCATGTACAGAAAATGACCGACTAGTA
CTACATTGTTACTTAACACAAGCTCATACAGTTTCTCCCGTAAGAGCGCTTGTTTCCCTC
CCCCGCGTCGCCCTCCTCTGGCGGCTCAGGGGAAAACCCTAAATCCGCCGCCGCCACCCT
CCCACTCCCATCACTCCCCTTGCCGTCGCCTGAGGGGCTCGTCGGCGAAGTCCGGCCGGC
TCTAGGGCCAGCGGCGGCAAGGCGTTTTTCTGCCAGCGCCGTATTCGTGAGGCGCGACCT
CGTTTGGCAGGTGGCAGCTGGATCTTGGGTTGCTCTCAGCCATGGTGTTGTGGTGGCAGG
GATGTTGGCCGTCGGCGCGTGGAGTGTCCACGGAGGCTTGGTGCGGCGCCCTTGCTCGAG
ATGCTGATGCACGAGCCGTGGACGCGGTGCTGGCTGTTGCGGGCCGGCCAGATCCGTGCC
CGTCCGGGCCAGAGGAGGGCGCGCAGGTTGCTGCACGTGCTGGTGGAGGTTGTAGGCGAC
GCTCCTCTGTCACGCCTTCGGTGGGTGAGCTGCAGCGGCTGTGGGAGGGGACGGCCAGAT
CTGGGCCCTTCCTGGCCCGTGGCTGGTCGAGAGGTGGTTGGAGGCGACACTCCTCTGTCG
CACCTCCGATGGATGAGCTGCGGCGGCTGCAGGCGCGGCCGGCCAGATCTGGGCCCTTCC
TGGTCCATGGCTGGTCGAGATGTGGTGCCAACCACGTGCGATGCGGATGTTGATGCTTCA
TCATGCTCCGGCGTGGACGTGAGGAGGGGCAGCTCCAGATCAGCTGGTGGGTGCGTCCGG
AGAGCTATCACCGACGCAGGTTTGCAATTTCTCCAGATGAAAATCCTGCTATTGGCCGGT
GATGACAACGCTTGTGGGTGTTGTTTCCTTGTTGAAGGCCACACCAAGGAGATTTTGCAC
CTCTCTCGTCTTCGAGTTCGGTTTCCGGATGAAAACCTAGATCTACTTTGTTGGATCAGC
GATGAGGGCGTCCTTCACGTCATTTCTTTGTTGGAAGCATCGCTATGGAGATTTGACCTC
TTGATGGGAGCACATGGTGTGTGGTACAGTGCCCAGTCCGGAGTTGGCGGTGACTGGATG
GTGTTGGATCGTGGTGGCGTGTCAGTTGGCGGCTGGCTGTTGGCGGGCGGTGTATGGGCA
TTGGAGCACTCTTGGCATGCAATTAGCGTCAAGCAAGTCATGTTGGCGTCCTCTTACTAC
CGGAGCGGCACATGTCTGCTCCTCTATGGATATGTCTTCTCTCTTCGGTGTCGACGAAGC
TGTTCAACATGCTTGTGGCCACCATGATCGATGTGATAGCCTGGTGCACTTATGTGATAT
TGCAGCAAAGTCGAAGTCGTCGGGCCGTGAGCGCGGTTGGTGATGTACGATGACGCCGCT
TGTATATCTGATGTTCCTGCTGTTTGTTTGGTTTTTTGCCGCTCTGTATGCCATGTGGTG
CTTTAGACCTAGTTTAGCTAGGTGGGGTATGTCCTTTATACAGGTTTTCGTCCGGGTTTC
CTTCAATAAACCGAGCAGTTTCAACCATCGGGCTTCTTCTTCTGTAATGAAATCTTAACA
GCTCTCCTGCTAACTTTCAAAAAAAAAAAAACACAAGCTCATACATCTCTGCAAACACAA
CTTGTTAATCTGCAAGCCCGACACTACTACAGACGACTGACGAAGGTACAATCTACTGGT
ACCGCCTTGGAACACACAACAGAATAAGCAGACGAGCAACAGTTGCAAGACTGATGACGA
TCGAGCTAGCTGCAGCATTATTCAACACTACTAAGCAGGTGCAGCAGCTAGTATAGCTAG
GCGGGCGATGGATGGATCCATCTATGGGTTGTAGTAGACGATCTTGATCTCGGTGACGCC
GTGGCAGTTGCCGCCGGGGACGGAGTGCTCGAAGCAGTGGTTGCCGCTGTTGCATCCGGC
GGTGGGGCAGTGCCCCTGCAGCGGGCTCCCGTGCGGGGTGACGGAGACGCGGATGGGCAT
GTTGGCCTGGTCGGTGCTCACCTCGTAGTACGCGCCGCCGTCGTGGCCCAGGTGGAACTT
GGCCACGGCGGCGCCCTGCGCCGACACGCTCCCGGACCACGAGCACACGTCGAACGACTC
GTGCTTCCCGTTGGGGAGCAGCCAGCCGTTGGGGAAGAGGACCTTGCTGTCCGCCACCGC
CGCAATACCCAGGTTCAGGTCGTGCGTGGCCGCCCGCACACACAGGTTCTGCACCGTCCG
TCACCTTGTGGCCGCCGCAGCCTTGACCAGCGGCGGACATGGCCATCGCGGACAGAGCCA
CGAGCAGTAGGAGGGCAAGGGGCTTGGAGGCCGCCATTGTTAGCTAGCTAGCTGTATGGT
GCTATGACCAGGGACTCGAGGAAGAAGAGAGGTTTGCACTGCTTTGGGGTGAAGTTTATG
GCTCAGGGTTGCGGGGGTATTTATAGGCAGAGAAGCTTCATTAGGGCTTTGGGAGGATGG
TTCGAGATTGTAGCCGCGTCTGATATTTGCTACCTAGCTGTGGTTAAGAAACTACACCGA
TCGTTGTTACTACGAGAACTAGAGACGCCGGTGTGGAACTGAGCCGTGTCGACTGGGACC
GAGCGAGCTCAACGTTGCATGTAGTCGTCCACTAGAAAATGTTGCATGACGTTCGTTGTC
TCGTAGCATGTGGCCGGGCCTACGGCGAAAGCCTGTTTCATGTATGGGTGACATGTTACT
TTTCCTTTGAGGGGACATGTTACTTTTTCTTTGGGCGGTACTGGTATCACATGTTACTTT
GCTTTGGGTGGTACCTGGCCATCCAGTCGGCAGTGGCTCGCAGCAAGGCAGCTCCAACTC
ACCGTGTAAAACACACGTCTGTTTTGTTTGCGTGTTCGTCAGGTTTTGGGTTTGCGCCAG
TCGGGCGTCCAACGTGCGACCGCTTCTTCTGTCCCATCTCATTCGTCGAAGCCTTAATAT
AATAAATTCAAGCATAGTAAGAGTAGTTCAAATCAAACATAACAACTAGTTTTATGTTTG
AAATAGCTTCATTACAATTCAATTAAAATTTTAAAAATATCAAATAGTCTTACAAAACCA
CATAAAGTTTGTGCACACGAAAAAAGATTAAACCGATAGATCTACTGCTTGTAAATGTGA
TCCCACATGTGTTCAACCAAGTCATTTTGCAACTGTGTATATGTTTCGATCACGCATCTC
ATGATTAAATTGAACAAACTGTTCAATGGTTGCACGATGTGGGTACTCAGACTGAACATT
CTCACCCTGGAAATGAAACCCTTGGTCGTAGATGCTGCCATCACGCTCATTCTCAACGAT
GATATTGTGCATGACCACACAAGCAGTCATCACCTCCCAAAGCTTCTGAGTGCTCCATGT
CAATGCAGGATTTCGAAGGATACCCCATCGAGACTTAAACACACCAAATGCACGCTAGCT
CCACATACTTCCTAACACTTTCCTGCATTTGAACAAACCTTTGTCTCTTCTCTCCATGCG
GATTGGGTATGGTCATCATAAATGTGGACCACTCGGGATAGATACCTTCAGCTAGGGAAT
ATGCCTTGTTGTAATGGTGGCTGTTGATCTTAAAGTTGACCTCCGGACACTGGTCTTCTG
CAAGCCATGCAAACACCGGAGAATGCTCTAGAACGCTAATATCATTGTGAGAACCAGCCA
TGCCGAAGAAAGAACGCCATATCCACAGATCTTGTGAAGCCATAGCTTCAAGTATGATAG
TGACACTTTTCACATGTCCCTTGTACTGCCCCTGCCAAGAAAATGGACAGTTCTTCCACT
TCCAATGCATACAATCGCTATTTTTAAGCATTCCCAAAAAGCCCCTCTCGGCATTGATCG
TCAACAACCTCTCTGTATCAGCGACATTTCGTTCTCTCAGGTATTCAGGACCAAACACCC
CTTCCCGAATATGATTGAACACATGCCTCCTCATTCGGAAGCGGCGACTAAATTGATGTG
GTTTGTAGAGTGTGCTTCTCTCAAAGTAATCGGAATAGATGAGGTTGTGCCCTTTCTCCC
TATTGCGGTTCAAGGCCAGATAATGACGGGGGATGGATCCCCTAAATAGAGGTCGCATCC
TACTAATGTGGTTATGGACGACCAAGGCTACAACCATTATGTCCTCATCGTCCGAGGACG
AATCATCGAATGAATAAATACAGTTGTCAAAGAAGTACTCATCTCCGCTATCCATGGTAC
CTTGCAAGCAAAGCGTCGAACACCTTGCGGTCATGGTGGAAACGTGACCGCAAAGGGCAC
ACCGAGCCCCTTTGCATGAAACAAGGTGCACGACCACGGGCGTAGGGCGAACCGACGACA
GGGGAGGAAGAAAAGGGTTGTTCCACCGACGAGAAAAGCAAGATGGACGACAGGCATGGT
GGCGGCGATGGCGAGGGGCCGATGGCAGGGCGTGAAAAGGGGAGGAAGAGTGGGGGTCGT
GTCACCGATGGGGAGGCCAGGGGCGGACAAGGGCATACACCGCCCCTGTCTGTGCATCTC
TGTTTGGACGCAAACACGTCCCAAACATGGGCCGCGAATGGGTTGAAAGCTGACCAAAAA
CAGACATTTATCCGTTTTCTCCCCTGTTTGGGCCGCGGTTTGTGTCCGTTTACCCCCAAG
TGGACGTGAGCAAATGATTTGGGGTCGTGCGTTGGAGTTTCCCTAAATCTTGCTCGGGTG
TCGGCACTGCACGCGTGTGGGTGCGACATCCAGCTCCAAAGTCATGTGAGGAGTCTTTCG
GAAGAACAGAAGAAGGAATACACCTTCATTGCGGCCGACTGGCAGGACGACAGATGGACA
AGCTCTCCGAAGGATAGTGCTGCACACGAGGTAATGGAAGAGGCGGTCAACGACAAGTCG
GCGCCACAATCATTGTTGGCCCATGTCGACATAACTTGGCGAGGCACGGATACACTTGTT
GGGGAACGTCGCATG