Contig Data
morexGenes
Links



Map Locations of contig_40428 (8350 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_40428

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_55960 5 4611 bp MLOC_55960.2 Available Available LOC_Os02g40430.1, FRAME:+3, EVALUE:0.0, 13102.m04505 protein HEAT repeat family protein, putative, expressed
MLOC_55961 1 546 bp None Available Available None





CDS Structure of MLOC_55960






CDS Structure of MLOC_55961






Contig Sequence (8350 bp)

>contig_40428 8350 assembly3_WGSMorex_rbca.fasta
CAACATCTTGGAGATATACTCTCCAGCNNNNTCAGCACGGAACACACGAATAGGCGTAGA
GAACTAAGTGTGAACCATTGCAGCAAAACGCTTATACATAGATAAGACCTCACTACGAGA
AGACATAAAATATATCCACGTGTGCCGAGAGAAATCATTAATAAAGATAATATAGTAGCG
ATGGCCTCCCTTCGATGCGAAGGGAGCTGAACCTCAGACATCAGAGTGAACAAGGTCGAA
AGGACGCTGAGACATACTCTCGCTATGAGGATAAGGTGATTGGACCTGTTTCCCAAGCTG
GCAACCCTGACAGTCTAAGGACATACCGCCAGAGATGGATCCAAGAAGACCACGTCGAAC
TAAGGATGAGAGACGAGAGCCGCATAGTTGACCAAGGTGGTGATGCCACTGCTGAAAAGA
GCTGGTAGACAAGGCCACAGAGCTGGAGTCAAAGTTGAGAATGACCCTGCAACCAGAGTC
AACAATCTGACCACTAGAAATGAGCTGCATGGTAAGTCGAGGAACATGAGCAACATCGGG
AACATGAAAAGATGAAGTGCTAAGAATGCCTCGGCCATTAACCGGGAGAGAGGTACCATC
TGCAGTAAGAACATGAACAGGAGAATCGAGAGCTCGAGTAGAGGACAGAGTGGATGAATC
ATGAGTCATATGGAAAGATGCTCCACTATCAAGAATCCACGGAGATGTACCTGCTTGTGT
AGAAGGTGGTCTTATAATGCCAGAAGAGTAAGTAACAGGACCAGCAGAAGACGAGACCGC
ATGCAGACAAGCACCAACCACAAAGGAAAGAGGTGTGTGCGAAGCGCGTTCGATGCAGTC
ATATGCACCAGTATAGCTTGTGAAAGTCGCGAGAGGTGTCGGGGAAGAGCGACATTCATT
GGTGAAAGTCGCGAGAAGAGTCGGTGTAGAGCGACAATCATTATATGTGGAGCTAGCGGG
AGGAGCAGCAGAAGAGCGACCGGCACAACTTGTGGAAGACGCCAAAGACGACGAACGAGC
ATCAAGCGCCGAGGAACGGCCCATATGCGAGACGGGAATAGTGAAGAAAACACTGTTAGG
ACTCATCGGACAGCGAGGGACATGCGGACCCAACGAAAACATCTCCCCACCCCTCTCTAT
TTTTAGGCAGGCAACACTACTGCTCACGTGTGAGTAGGAGCTCTCGACCAGAACTGCACA
GAGATTAGGCAACCAGCAGCGCGACAGCAGCCGTATCCAGCCGAGGACGACGGAGATGGG
CGGCGGACCGGTAGGATCTGACGAGTCCAGTGAGGGCTCGGAGACCAGGAGACCAGTAGT
GGGTGGGGACCGCGGGATCGGGCGGATGGCAGCGAGCTCCAGCAAGGGGCGGCGACCATC
GGCTTCGATCCAGCGGAGGAACAGCCGGAGCAGCAGGCAGCTGCGGAGTAGAGCAGATCA
CAACGACATAGGAGGCTTCAGCAGCGGAGATTTTGTCTGGACAAGTGCACGAGCTTACAT
TGAAGATGTTGTAAATTAGTCCACAAAAGCCACATGACATAAGTCCTGAATCCTGAGTCC
GAAAAATTAGAGATTAGACTCTAGTGGCATAAAATAGGTGCACATAACACCAACATATCA
AAAGGATTAAGGCCGGGTAACTCTCTTATGTCTCAACTTTCATCTCCAACTCCAAGTCTC
AATAGCATCATCAAACTCATCGATGGTGGTAAACATTCGTGTTGTCTGTTGTCTCACCAT
CATAGCTCACATTATCATCACCAATCACAAAGTCTGAATCATCGTTCTCTCCGTTGCGGA
TGTTTGAGTGTTGCTCTTGGTCCTCCTTTGCTCATCTTCTTTAATCATCTTGTTGGTGTA
GGTCTCTTGTGATGCCCTTTGTTATGGGATACGGACAGTTGACGACCCCCTTTGATTTGT
AGTAGACTAGTAGCTGTCCTAGAAAGATTGGAATTTAAATGCATCAATCTTGACTGGCCT
GGGATCAGAGACCTATGATATTTGTCTGGGTTAAAGCCCAATCCATTACAACTGGAGTTT
GAGTCCTAGCTATCTGCATCTTGGGCTATGTACCCAAAGGGGGTAAAGTGGCACATCAAT
TTGGTTTGGCTGCTGCCATAGTAACCAGGCGGCTATATGCCCTCTCCAGCTCCCCCGCGT
GGCAATTTCTGTTATACTAATTTTCGGTGTCCTGAAACTATATGGATGTAGGTTGGCATC
TGGAGCTTTAAGTGGTTCCAAGGGTTGCTATGCAATTGCGAGTTTCTGTTGGTTTGATCT
AACACTGGGCATTTTTGCAGATTATTAATGATGAAGATGGGGGCATGCACAAGCGATATC
CTTCATCATTGCATGAGAAGGGTGCTCAACTTTCTCGTTCCTCATCTCATGCAAGTGGTA
CACATTTGACCGGATACAACACTTCATCTATTGTTGCAATGGACAAGGGTGCAGCAGTTT
CTTCTGAATCATCTCTCCCGTCAAGCATGCTCCTGTCGCAGTCAAAGGCAACTGGTAGAC
ATGCTGAAAGAAGCATAGAGAGTGTGCTTAGTTCAAGCAAACAAAAGGTTTCAGCCATTG
AGAGTTTATTGAAAGGCGTAGGCATCTCAGGCAGGCAAAATTTCTCAGCTGTGCGCTCAA
CAAGTTTGGATCTTGGTATGGTTTATGCTGCTTAATGATAATTTGTTTCATCAAGTATGG
AAAGGCTCTTTTGTTGTGTAGTCAAGTCTTTACTGCTATTGCTTTCATGGCTTATTTCTG
TGTACTTGATAAACCTTAATTTCTTTTTCTTTTCCTCCTAGTGCAGGAGTTGATCCTCCA
TCCTCTCGTGATCCTCATATACCGCTTGCTGCACCTGCTTCGAATCACCTTTCTTTGCAG
AGTTCTGCATTGTTGGATTCATCCCTCCCTAGCATAAGTATCAGAAGAAATGGCGGTTCA
CGTTTGGTAGACGCAATGCCTCAGGTAGACACCAAAGAGCGATCGAGGTCACCATATTCG
CATAATCTATCATCTGAACCCATGTTGGATTTGTCAGTGCCTTATTTGAGAAGATCTTTA
GGGAGATCTCAAGATGATAGCATTACAAATGAGGGTAATGATACATGGCCAAGGCCTAAC
AGGCGATCGCCACAGATGCATACGGACAAACACTTCACCGATATGCCTTATAGGGATGCC
AGTTACAGAAATTCGGCAAATAACCATGTCCCACACTTCCAAAGGCCGCTTAGGAAGCAA
GTGGCATCAAGAGTTTCTGTGGGTGTCAGACACAGTTTTGATGATGGCCATGTCCCATCT
AATGACATGTCTGAATATACAGATGGCCCAGCATCATTAAATGAAGCCCTCTCTGAGGGT
CTTAGTCCGAGTTCAGACTGGGTAGCAAGAGTTGCAGCTTTTAATTTTGTTCAGACATTA
TTGCAACTAGGACAGAAAGGCATTCAAGAAATTACTCAGAACTTTGAAAAGGTCATGAAG
CTATTTTTTCGTTATTTGGATGATCCTCATCACAAAGTTGCACAGGCATCTTTCTCCACA
CTTGCAGATATTATTCCAGCATGCAAAAAGCCATTTGAGAGCTATGTTGAAAGAATTTTA
CCGTATGTCTTTTCAAGACTTATTGATCCAAAGGAGTTGGTTTCTAAGCCATGTTCATCG
ACCTTGGAAGTTGTTGGCCGAACATATGCTGTTGACACATTGTTACCTGCAATAGTACGT
TCACTGGATGAACAAAGGTCTCCGAAGGCGAAACTGGCTGTTCTTGAGTTCGCTAATAAG
TCATTCAGTAAGTACAAGGTAGACTCTGAAGGTTACAGTAACAGCGGCTTTCTTAAGCTC
TGGCTTTCAAAACTAGCACCTTTAATACATGAAAAGAATGCAAAGTTGAAGGAAACGTCC
ATTAAAGGAATCATATCAGTTTATTCTCATTTTGATTCAACATCAGTCCTAAACTTCATT
CTAAATTTGTCTATTGAAGAACAAAACCTTGTGAGGCGCTCGCTCAAGCAATATACTCCT
CGTATTGAGGTCGATCTGGTAAACTACTTGCAGAGCAAGAAAGAGCGTTCACGTCCCAAG
TCTTATGAATATGAACAGATTGATTTTGGAACTTCTGAAGATGGTTATAATCTGACATCA
AGGAATAGCTATCCTTTTGGACGGGTCTCTGCTAGTTCCTTTGACAATGAATCTGGGAAG
AGGGTGCATGCAGTTCAAGAATCCACATTTCTTACTGGTCGAACAACCTCTGATGTCCAC
ACTGATCATGCTAACCAATGTTTTGAACCTTCTTCTGAAGCTGAAATTTTTACAGCAAGT
CGGGAATCAAAGAGCAATGCTCGCTCAGTTGTAGAAGCTGCACGCTCATGGGCAGATTAT
CCTGAAAAATCAGATGCCACCATTGATGATGAAAATTCTGTTGGCACCCCTCGCCTGGAT
TTTGGCCTTCGTGTTTCTGATGGACATAATAATGCTGCTGTTACAACTGTCGGGAAAAAT
ATGCAAGATATGGATCAATTTGTCGACCTTGGTTCTGTGAAGGTTGTCTCACATACAACT
AACGGCCCCAGCATACCACAACTTCTTCATCGGGTACTTCTGATATCTCCTTGTTTTTTT
TCCTTCAACTTTTATGGCTCCGATTGTAATTCTGATACGTGTTGCTTTTACTTTTCATTG
TCCTAAATAACATCACGATTATATGGCTTTGTACCTTCTTAGATAAGTAATGATGGTGAA
GTTTCATCCCAAGACAAGCAGGAAGCATTGCAGCAGTTGGTGCAAGCATCTGCAAACAAT
GATAACTCTATATGGACAAAGGTCTGTAACCTTACCATTTTAATTCCCATTTTATTTTAT
TATTTGACGAAAAACTTACATTCTTGCTGCTTTCTTTTTGTGTGTTTACTTAGTTTAGAT
TCCTCTTCATTCTTTCATTGAGTGTTCAAGTTCATTTAATCTTATGACTTCTTTTTCCAT
CTGGTGGTAAGGATTTCTTGAGTGCTCTCTGGGAAGGAGGGAAATGCATTTCCCAAAAGA
GAATGCATTATGTTCCTTTTTATCTTTTCATTAGACTATTAGACTAATAGGGTAGTACTG
CTATGTTTACAAATACACCCTTTCTAGTACAGTTCAACTACTTGATATTTGGCTCTTGAT
GAGATGGTTTCTGTAGATGAAGAATGCTTCACCATTTGAACAACAGAGAAAAGTGACATT
TGGTTCTGTCTAAACAATCATTTTAATTGGCGTCCCCAATTCCTTTTCCACAAAAAGTAG
TCACTATCCATTTCTCTCCATCTATTATGTTACTTTGTGTCATTTAAATATTTTATCATT
CAACACATAAAATCTGTATTCTAATACTAGCCCCTCCTCTAAATAGTATTTCAATCAGAT
TTTAACAACTGTCCTTGAGGTATTGGATGACTCTGATTCTTCTGTCAGGGAGCTTTCTCT
ATCGCTAGTTGCTGAGATGCTCCGCAATCAGGTCTGGTACTCACAAATCATGCATTTATG
TAGAAGTAGGTTGTATTGTTGATTAATATTTTCTATTTATTTTCTCAGAAAGATCAAATG
GAAGAATCCATAGAGATTATCCTTGAAAAGTTGGTGCAGATGACCAAAGATGTTGTAGCA
AAGGTACATTTTCCTTAATTTAAGAGGTTTGGTGATGTTTCTGCTGTGCTGATATTTTTC
TTAATGCTGCAGATTTCGAATGAAGCAAACCAGTGCTTAAATGCCGTGCTGGCAAAATAT
GATCCGTTTAGATGCCTTGCTGTATGTCCAGTGCTGTAGTCCTATTTACTAATGATATTA
CTTTAGTACTATTATCTTTGTTTATAGTTTTTTTGTAGCTAGCAACTTATACTACTGTAT
GCATTTTTTCGCTTGTACTGCAGGTTATTGTGCCCTTGCTAGTTACTGATGATGAGAAGG
CACTTGTCATGTGTATCAACTGTTTGACAAAGGTAAATTAGTTTCACATTAGCCAAGAGA
ACAATATGATTCTCTTTTTAATTTGATGGCAAGTGCACTATTCCGAAGTTCCCTTAGCTG
CTAGAATGGTTCTGGTTCATCCATCCCATCGTGAGTTGATGACTATTGATCTGATGGCCC
GTCATGGCTTGATGACTATTGATCTGATGGCCCGTCATGGCTTGATGACTATTGATCTGA
TCGCTGATGGTTCTGGTTCATCTGGCAATTTCTTAGATTGTAGGTTTGTAGTAAGCACTC
CCCAGGACCATCCTTTCTGACTATGGATCCGATAACCCTTGTGAACACCAGTATTCTGAC
AATTATTCCATTTAAGCACCATTGCTAGATCTGTTGGCGAGGATATATTTGTACAGAAAG
GAATTTCTGATAACTCTTATTAGTTTGTAGAGTCGTTCACTCATTTTTATTCTTGTTAAC
TATAGCAATATATCCTGAGAACCAATAGTTGACTGTTCGTATTCTCCTGCTAAACATGCA
GCTTGTTGGGCGGCTTTCACAAGAGGAATTGGTGGCTCAACTCCCTTCATTTTTACCAGC
ACTTTTTGATGCTTTCAGTAACCAGAGTCCAGATATTCGCAAGGTATTTGCCTGTTCTGC
TGATGAACTACCTTTTTTCGCTGGCGTGCTAGTTCCTGGACTAGGGGACCTTGAAGCTTA
TTTGTGTTATATAAGGAGTATTAGTATTAGGTCTAGGAGTCCTATTAGGCTATGTTTCCT
TTCCTTGTGCCCCAAGTATATATATCTATATATAATCAAGTTGATTGCAATACAATCAAG
TTGCATCCATAACAATGTGAAGAACCCAAGAGACCAGTCTAAAAAGACGGCTTCTTGTCC
CACCAGTAATATGGGCTTCTGGTAGTACTTGAAAACTAGGGATAGGGGTGCTACGATTAT
TTTAGGCAGCATCAAAGGACCAGGGTTTTATGTGCCAACTGTAATCTCCACTTCTGTTTC
TAAGAATAGATGTGGGGTAGGTGGAAGCTCTCAATCAACCTAAAGTTTAAACATGAAAAA
TGGTCATGCTATTTGTTATTATTTCTTACGGATATTTCGGTGCCAGGTTGTGTGGTTTTC
AGCTTTAGCGCATTCGCCGTTTCAAATTTCTAGTGGGTCATTTTCATTTTACTCATTGTT
AGTGCACATTAACTGTGCCTGACACATTTAGCGAACATCATTGGTGTTCCACATCTGATA
TCATTTACACTTGCTTGTAGACTGTTGTATTCTGCTTGGTGGATATCTACATCATGCTAG
GGAAAGCATTTGTGCCATATCTGGAGGGGCTTAGTAGCACACAGCTGCGGCTGGTAACAA
TCTACGCAAATCGGATATCACAGGCAAGGTCTGGTGCACCTATCGATGCTAACCAATGAG
TAGTATCATATTTGTGTACCACATGGACATTTGTTTGGATGGGCTGGAATTATGGGTTTC
ATTCATTTGTGCATTTGTATAGAACAGACAGGTGGTGCTCATGTATTTAGCTCCTGGCTT
TTGTGGAGTATGTGTTATTTGTCTTTTTTTATTTTCCTGTCATGTGTCACAATTGACCAT
TCACATTGTACAAAGAGACAGAAAAAGTTTCACGGTGCTTGTTCATCTCCCATTTTCCTG
TACGTTGTGAGAGGACAGAACTGTTGAGAGATACTCCCTCCGTTCCTAAATATAAGTCTT
TCAAGAGATTTCACTATGAACTACATACNNNNNNATATAGACATATATTAGAGTGTAGAT
TCATTTATTTTGTTCTGTATGTAGTATTTACTGAAATTTCTTAAAAGACTTATATTTAAA
AACGGAGGGGGTAGTAGGTTGTGAATATTTATGAGACGGTTTAGCACAGACGATGTTTTA
TTAGATGTTGAGAATCATCAGATTGCCTGCCTTCTACTCTCTCCATTCCTAAATGTAAGT
CTTTTTAGAGGTTCTACTACAAGACTACATACGGATGTATATAGATATACTTTAGAATAT
AGATTCATTCATTTTGCTTTGTATTTAGTCTTCTAGTGAAATCTTTATTTAGTCTTCTAG
TGAAATCTCTTTAAAGACTTANNTTTAGGAACGGAGGGAGTATGTGTAATGGCATGAAAC
ATTTGGCACTGGATCTTGAAATTGCCTGCAATCATGCAATTGAAGTGCATGCTGGTGGGC
AAGTGACATTTCACTGTTGAGTCGTTGGAAAAGTTACAGATTTGTGCTAAGTTAGGGCCT
GTTTGGGACTGCTTCACTCCATCAAAATCAGCTCCGCTTCATCAAATTCATTTTAGAGCA
GTTTCATATAGGAGTTGCAACCATTTCAAGAGAATGTTTGGCTTTCATTTAGCTCCAGCT
TCACGGATGG