Map Locations of contig_40415 (10023 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_40415

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_55955 3 1439 bp AK365179 Available Available None
MLOC_55954 1 1599 bp None Available Available None





CDS Structure of MLOC_55955






CDS Structure of MLOC_55954






Contig Sequence (10023 bp)

>contig_40415 10023 assembly3_WGSMorex_rbca.fasta
TTAAAAGAAACTCATTCCGTCCAAAAGTAGATGTAGGTTCTGCAGTTTTTTTTCTAGCCC
AGCGCAACACACGGGAGAAAAGGTAAACCAAAAAAGCAAAAAAATAAACAAAAATTCATG
TCTCTTGATGTGAACCAGCCTAATAGAAGAGAAAAGATAAACAAAAATTGTTGAGGAGAG
GATTCAAACCGGGGTGTCCCGGATAAGAGGGGCATGCTCTAGCCCCAGCAGGCTATCGCA
GCGAAGGTGTTCATTTTCAGTTCACCCTCCTATAAACCAAAATCTTACAGAGTGACTTGT
GATAAAAAAAAACAATTCATTGTGTCTAAAGTCTGGACTATGGATTATTTAGCATAAATG
TCAGGGGGTTTTACGTAAAATGCAAAAAACAGTTGAGAGTCACTTAAAGACGGACTGTGG
GTTGATTTTGAAAAACTACAGGGTGTTTTTTGCAAAACGACCATGACGGACCTTATATAT
ATAGGGAGAGAAAAAGGGGTGTTTTTTGCATCTTTCAGTTCACGGTTCACACAATAAAAA
ATGGGCACCAAGGACTCTTTGGCCTATCGTTAACCTAAGATGTCTTTTTAGCTCGTAAAC
GCTCCTCTTCGTTCGAGAGTAAATCGAGGCAGGAGAGGAAGGACGAGGCCGACGACGCTG
GGATCAGGGACGCTGGGGCGACAAAGGCGGTCAAGCTCCCTGTCCATGGAAGATAGGGCA
CGAGAAGCTCAACCAGGGCTAGAGCGCTCTTTACAGTAGTCTTACGGTAGACATTGTTTT
TATCATCTGATTTGAAATGAAGATGAAAATGAAAATCGTTCATGACAATTACCCTTGCAT
TATGTTCAGATTAACTGTTACTGTATCGTTTTGGTTCCGATTAAACTGCAGCATTTCTGT
CGGTTCTTAGCACGCTGGAGTCCATTTGTTCAGGCTTTTTAAAGTAAGGGAGCTCCTCCC
TATATCGATCTAAAACACATATATTGTGCCGTGCCATTGTGCTGCAATAGCCAGCGGCCA
TTCCTTGCAGGACGGCATTTGCGAACATAAACCTGGTGCAATTTTATTCAGATCTTGGTC
GGAGGGCTGTGGGGCGTTCATCAGGACCCCACACGCCAGCGAACGTTCGCCAGATATATA
TATTGATTTAAGCCAGATCCACCGACAACAGTAGAAAAGGTTGAAGAAATTCAACTGTGG
CAGCTCAAAAGTCCAGCCACACATGGGAGTAGCATTCTCGAGCGAAATATTGAAAGACGA
AAAGCTGCCGAAACACGGGACCGAGGGTGAGGATTAAGGAGGGGGAAGGGCGCATCAGAG
TCATGGAAGTAGAGCAACACGGCTTGCTCCGGAGAGCCAGCTTCTGCTCCTTAAGCAGGA
TATGCATGTCGTCATCTGCGATCCTCCGCAATCCCCAACAAGCAACAGGATGGCATAAAT
ATAACAAAATCATCAGGAGACGAATCAAAAACGAGCGAGTTGAACCGAAGAAAACAGCAA
GTGGACGATCGATCCATTGACAATTGCAACTTGTTCATAAACAAGTGTAAAAAAAAGGAT
GGGTGGACGGAATTGAAACTTTGGAAGGGCGGGGTGAAGCACGAAGATGGATGTGGCGGC
GGGGCGTGACTGGGGGTGGTATTTATTGACGGGGATGACGGCTAGGGTTTGGCGGGTGCC
ATCTCTCAGCCGTCCGATCCCCAAGGCTTCGGCGGCTGAGATTGGACTTTCAGGAATAGG
TTAAATTCGGACCGGCGGAGGATCTGATTGGTAATTTGGCATAACGCTTCAGTGAAATAT
ATCAGATGGTGAAGAAGTATTTCCATGAAAAATAAGGTACTTTATATTTCCATGAAACTC
CATTACAAGCTTCTAATAAAATTCTCAAGTGAATAAAATTCTCAGCAATATGCGTGTATT
CCGGAGCTCAAAAAACATCTCGTATATTATGGTTTTTCTATAGTACTGTAACATAGCCTA
TTATGGTTTTTCTATAGTACTGTAACATGGCCTCCAATGCGATGGTAAATGTTCCCTTTT
GTACCTATGTTTGATTTTTCAGGGAATGTTTATAAAATTACATTTCAATCGAGTGGTGAT
AACCAGGGATGGCTACCTCGTTAAAGTTGAAAGAGTCTAATATTGAAACAACGTTGCCAA
TGGAAGCAAAATGACGAAATCTTACATCCTCACGACAAGCAAGGGCAACAGAGCGAGCGA
CAACATTTACGCAGACAAGAACTTGAAAAAATAAAAATAAAAAACTAGTCGAATTTTCTT
CCAGATTGCACCCGAATTGTCATAGATGCTCAGGAACAAAACGGTTCATACTCCAACCGT
CACATGCAGCAAACTTTACACTGGAGAGAATTCAACGACCAATATCCATATGTACACAAC
TCCCAAGACAGGAAGAACTGAATTGCCGTTCCTCCCCCGAAACCACCATTGACCAGCAGG
GGTGTGGCATCAACAAACCAACAAGGCTCTATTGTACACAATTTACTTGCCACATAGAAG
CACGCACTCTCTCGCCCTACAGGCTGATTCTACTGCCTGGTCAGGCTGCTTCCTTGCTCC
TCGCTCGTCACACAAATAGTTGGGGACTACAGCTTACGGACAGAGCGTGCAAGCCAAAAG
GGTAGAGATGCTCCCTACACAGAGATGAGAACAATGAACCAATCAGCAGCTGCACTTCCA
CGGCGAAAGAAGCACGAATAAGAATAAGCGAGGGGGGAGCCTCTTGTGTCCTTCACAAAA
TTGCATCATTAGGTACTCTGTTTGAGGGAAACCATGGAGAAAAGTTTGTTCTCCAGAACG
TTACCTCGTTAGCTACTTTGCTTGAGGGAAACCATCACTACATTGCTTCTTGAAATTCTG
GCACTCATCAGCCAGATAGTCGCTGTAAATTTGTGAAGGGGATATCGAATAAGATTCTGA
AAATCATTGCAGATGCCAGACAGACGCAATGCAAGACTTACTAGATGCGTTCCACCATTT
CCGTTACTTCCCATCTAGGACTCCATGGATAGCTGTTTTTTGGAGGTGATGTGATAGGTA
TACCTTGGGAATTACAGTGCTGCAGATGAATCAGGAATCAGAACGTTACTGCCCAAGCAA
CAAAAATACCAACAGACGCCACTACCACCAACCATCCTAATCTTTAGTCAAAAACAAACG
ACTGCATACAGGCAAGACCTTTGATCAAGCATCTAGTACTTCAGAAGTACTCCCTCCGTC
CCATAATGTAAGACATTTTTTGACACTACACTAGTGTCAAAAAACGTCTTACATTATGGG
ACAGAGGGAGTAACCAGGAAGCGTGTATACCGCAAATAACCAGTAGCCAAATAAATATAC
CTGACAACTCTGCAAAGTCAGGATGGGTTGTTGTTGGGGAAATTGAAGGGGGATGACAAA
GTGAACCTGCAACATCACATTGCGCCAAAAATCACTGCTGGTTACTGGATAATTCAGACA
CAAGTATATGAGACTAAAGAATCAATGCCAAATGCCAAAATAATAGTTTGTAGAAAGCAT
TCTTACTAAAAAAAAGTTTACTATTTGACTGAACTGTGGCAAAAGTTCACTTTTCAATCT
TCAACTATAAAACCGTTTGAACTGCACCATCAAACTACTGAAACCGTGCTTTTCACACTT
GGGTGGCTCCCTAGTGGTTTTGATGACATGAGTGCCACATGTTATCCATGTCGCTACCAT
GAAATGACAAACACTACAGCAACAAACAGTCTATAATAAACTCCCTCCTTCAGATAGAGA
ACTTAAACGGAAAATGATAGAAATGATAGAAAAATTGGCAGAAACAGAACAGTAAAAGGA
ACCGGTGACATGGCGGTGATACGGTGGTCGGTGGACACATGGCAGCCATGTCGACCAAAA
CAACTAGTGAAACATCCCGAGGGTGAAAAGGGAATCCCTTTTTCACAGTTTGATGTTGCG
AATCAAACGATCCTAGAAGAACTGAAAAGTGAAGGCATTCCATGCTCTAGTGCGTTTCAT
CGTTTCTGGTACAAAAAATGGATGTGGTTGTGGTTCAACGTGCTTGGCAATTTTCAAAAT
GTAATGCCAGCAATTTATGAGTTCAATGTTCATTTTGATTGAGTTAGAAGTTTGGTTTGT
GCGTTGAATCTTGTGATTCGATGAGTTGAAACTTAGAAGTTGGTAATTAGATTCAGAAGT
TCGGATTTGACTGTTTGGGTTAAAAGTTGGTCATCTGTATGCTTTCAGTTAAGTTGGATA
TTGTTTTCTTTTACATTTTCCACGTTACCTCAAGCGATGGTGGCACCGCCTGCTGGCCCA
GGAAGGGGGATGGGGTCACACAGCCCAGATGACACGGGTGCCAGAGCGCACAAGGGCAGG
TCCTCTACATGCTCTAATTTACAGGCAGCCCCCACACAAAATTGTAGACAGCTGTATGCA
AATACAAATACATATCGAGAACAAAAATAAGAAGGCTTATTTAGCAGAAGGGAAAGGAAA
GTATCTATGACTTGAGGGGAAGCCCCTGAGCTTAGAGCAATGCTAGGAGATTCGACATAT
CGACAGCCTCCAAAATGGTTTTGGAGCGCACTCCATAATTTTTGGGAGGCTGCCAAGCCT
ACGTGCAGACTCAGACTCTCCAAAATGCGTCCTCCTTGATTTTTTTCCTCTCGTTTCCTT
TTTTTGTTTGCAACAGCTCAAATTTTGTACTTCGGCTTGGCATAGATTGTTAACCAAACT
TCGGTAAGATCAACATCAAAAACTTGGAATGAATTGCAAAGTAATACTCCCTCCGTCCGG
AATTACTTGCCGCAGAAATGGATGTATCTAGACATACTTTTAGTTCTAGATACATCCATT
TATATCCATTTCTGTGACAAGTAATTCGGGACGCAGGGAGTAGTTCATTTATATACGGGA
ACAAAATTAGCCGCTTTAGTGACATTGTACATATTCAGGGATAAGATTACTCACTTTAGC
AACATTTTACAGAAGGGGGTGACATTTCCACACACAACTACACTAGTAAACTTTGAACTA
GATGCCGCAGGACGAGCCAGTGCCGGCGTCCGACTCCCATGCCAGCCAGGTGCCCTTCTC
GACATCAAGGGCAGTGGCGCATTCCCAGATGGCACACTCCCTCTCAGCGTCCATCGCTGC
CGATTCTGTCATGGCTTTGTTGAACTCCGCCCAGGCCGTGTTCTCGTCAAAAGACTGGGG
CTGGGCGGGCAAGGTAGGCGGTAATGCTGGCGTTCCAAGCCTCCCTACGGGTGAGGGTGG
AGCGCTGGCGCGTCCGTGGCACAGCGTTGGTGTTCCGCCGGGTGGCCCTCTTGCGGACGA
GTCCCACGAGCACACGCGGAGTGACGGGATCCTCATCGTCCGACACAAGCATCTCGATGC
TAGCCATCTCGCTGAGGGCGGCGGTTTGCGCCTCATAGGCAGCAGCATCCTCTGGCATAG
GAGTCGGTGGACGGCTTTTATAGGGTGCGGATGGATCTGGGGAGTGGAGAAGCGGAGAGA
GAAGTGGTGATACCGGAGTCGGTGGACGGCTTTTATCCGTGAGCAGCGGGATAAGGCACA
GGCGGCGGATGGAAATCACGGTGGGGAAGGGCGCAGACAGGCGGAAACATGGCAGAGTTC
AGATCTCTTTGTCGAATCTGCTAACACTGCTCTTATATATTACAGGAGATTCCCCTTGGC
ATTTTTTAAGTAAGGGTAGTAAAACGCAACCATGGAGGGTCAATCCTGGGCCAGCATCCC
GCACAGCTTGAGTGGCCAACAATCCTAGCATTCAGTCCGTCTCTTGGTAGAAAGCTAATG
AACTATATGTATTCTTTTAATTTTATTTCTTGATTAGCTCCACACAGTGGAGAGAATGGA
AAAAAATAGAGCTAGATTTACGCATTTAATGACATACCAGAAATGTGAAAATCCCCGAAA
TGGAAAGAACTGTGGCTTTCCTGCAAAAAATCTGATGCATAGATGGAGTTGTTAAACGAC
ATGGCAAAAACCACAATAATATAAGAAAACAATGAGAAGCAAGTACCGGATCAGCCTCCA
ATGGCCTCCCAAAAGCAGGAGCTAGGGCCTCAATGAATCGTCTTCTGCGACCAATTGAAG
CCGATGCATCCACAACCTTCAATGCAATTCAGAAACATAAGCTTGTAACCACAAATCCAA
GAGTGCCATTAATGGTATTCTAGCCAATCAGATGCTTGAACCATAGTGAAATTTCAGTAT
TACAGTAGATCTAACAAGTTACATGCTTATACGTCCAAACAAGTCTACTAATAAAGGTCA
AAATGCAAAAGCTACAACACGGCAAAAGGTATCTTGCTTACAGCTACCATGTCTATGTCA
TTTCCTAGTTACTTGTTTCTATTCTTGGCCCCATTTTTCGGAATGACACATCCATGATGA
AATCTTGAGCACAGAAGTGCTAGCAGTCCCTAACTAACATATCACATTCAATATGAATGG
AGTTGACATGACAACAGAAGATAGAGCAAAATAAAAACAACAATGGTAAGAATAGACAGT
CAGATCAAGACAGATACTGGTAAAATGCAACAATAATTACCTGCATTTTAAGATTTTCTT
CTAAACTGGGAATATACTCAGCCATGCACCTTTACATAATTAGACAAAGAGGAGATCATC
AGTGACAAAGTGATGCTGCTTCTTCTGGTGAAAATGTCTGCAGAACATTATATCACACAG
GTCTGGTCTGTTTTGGCATATAACATGCAACAAGAGATAATCTTCGTTCAAAGCATTTAC
TCAATTGGAAGTCTGGCAAGTTGACTTACATCCCATCTACCCATGCAGGGAGCTTAACAC
CATCCACGGAGAAAAGTGACTTCAAATCAGGAGTTGAGATCAGTTTCAGTCCTGGTGCAG
AAGGAACAGAGAGGAAACTACTGCTAACCGGAAATATGGCCTGCAAAATAGCCCAGCTGT
CCATTAGGAAATGAATGACAAAACTCTTAAATTCCATTAGATTATCCAAATTACAGACAT
ACAAAATTAGCAGTGATGTCCATGTCTAACACTAAATATAATTATTATTTATGTGTAGCA
TGATTTGTCTGCTATCAGGGAAGTATTTCGTGGAGTTTTGCCAGATTGTTTGCATACTGA
GTCCTTGACAAATGATATTTTCACCAGCTACTTCCAAGTCACCACTTGAGCGAAAGAGAA
TATCTCTATGCATGTTGCATAATGACAATGCTCTGACCGTAGTAAGATCCAATGGCTGGA
ACATTCTTAAGCAGTACTATCTCCATAACGGTTTATTAGTCCTCCTCGCATTTTGGGTCA
TAATTTGGCCATGATTTTCACTAATAAAATATAAGTTAAACGTAGCTAAAGAAATATCAT
TGAAAACTACATTCAAATACGAATCTAACAATATAATTTTGGTGGCATGCATTAACATTT
TGCTAGTCAAATATATGGTCAAACTTTGACCCAAAATACAATGGGAACTAATTTTAGGTA
ACCATGACTGCAACCATCACATGGTTTACTATGCATATGCAGTTATCTTGGTTCGAGAAG
ATGCACACTCTCCTTGTTACAAAGATGTGGCAAGTATTCCAGAAAAATAAATGAACTAGT
GTAATGTACTCCCTCCGTTCCTAAANNNNNNNNTTTGTAGAGATTTCACTAGTGGACTAG
ATACGGATGTATATAGACATACTTTAGTGTATAGATTCAATCATTTTGCTCCGTATGTAG
ACCCTTAATGAAATCGCTTAAANNNNNNNNATTTAGGAACGGAGGGAGTATGTGCCTGCG
GATGGGCAATAGGAAGTACGACAAAACTTTAAACTAGGAATTGGGATTGTTAGTTGCTAA
CTTATGAGCTGCTTCTATCATTAGGTAATTTGTTAGTATCATTCAGATTTGCTAGCAAGG
GACTGGCAAAGAAACAAGGCACGTCTATTTCAAAAGTAAGGATTAGTTAATCAAGTGCCA
GTCTACTTCATCCCTTCCTGCCGTCGCACCCACCTGGGTCCTGGACTCCTGGGGTGCCTC
GATCAGGCCTTAGGGTCCCATACTATCATGGTTATAGTGTTCCAATTTTCTCAATTATCA
TCATCATTACTCATTTTCTAGAAACATCATCAACATTGTTGCAGCTATATTTACATGTCC
ACATTAGTGTACATGTAAGGAGTGGTTTTAGAGGTTAACCTGCAGATGGATCTTTTGGGG
AAGTTTCCAAGGACATCCAGGCACCATCATATTGAGGTCTAAATCCAGAAGCGGGACAGC
AAATTTCACCTCATCTGGCTACAAAGAAATATGAAAATACAATATAAGAAAAGGCATCAA
CTTTCAGAGAAGAAAATGGCTGTGAGGACTGTAAACTTACCCTACCAGTTGATGATACCA
TGGAGACTTCAATCCCCTGTTTGAACACAAATATTGGAAAAGTCATCTATCAGATAAATG
GATTTCAACAATCAAGCTGAAGAACTAAACTGGTAATAAGCCAGTCAAATGGCTTGATCT
TCAACTCATTCACACGATCATGTATGTTTCTCACTATATTAAAACCAAACCATATTAAGG
ATACATTTTAGTTACTTCATAAGTTAAGATATGCAGTCAATGCCACAGAACGGACAAAAG
TGCAAACTTAGTACATTTACCTCCTTATCAAGAACAGTGCCTATTTCAAACTTCAGTCTT
GTGTCACCCACCTCCGCAACCAGCTTCTTTTGGTATTCAATGTATAATAACCTGCAGAAA
ATTAAGCCAACAAAATATAGCTTAGAAATGAGTTAACCACGAAACCACCAGTACAATCTC
AAGCATGCTCTGCGCACCTCATATCAAGATACCATTATTTCAAGCCAACAACTACACTGG
CACTGCTAATTCCTCTTAACATATCAGTACAGATTTCTGTTGAGGACCCACCACTAGCTT
CACTCAATGATGCATGCATTGAGGATTTGATGATTTCTAGTCAATATCCAGCCCCAGCAA
GTGCCTAGCCAAACCAAGTGCAAGCCTAATAATCACCAAGTTGCTGGCCTTGTGTTTACG
CTTTATTAATTTGAGTGTTTTTCTTTCATTAAGTCATTTCAAGTAAAATGGGATAAGATG
GTTCATCTGTATGGTTAATTGGTTATGCATAAATGCTTCAGAGCGAATGAAATGAATAAG
TGCAAAAGGCAAACGACGAAATATATCTATATAATTTGGAACCAAACAATAAAGTTAACA
TCTCCTAAAAATGAATGGACTAGATGGAGCACATTTTCTGTTCACACGACACGTGTACCT
TCTTATATTAGATCAATTTGGTATATGAAGAAACAGAGGGGCCAGCCATTAGTTCTTTCA
TGATTATTCCATTACCTTTACAAGAATTTGAGAGAAAAGGAAGCGCCGCAAAAAACAAGC
AGATTTATTTGTTTGGTATGACACATAGGTTGTGCAAAACTTCAGTTTTCCAAACTAGAC
CCCACCAATGTCAAATGGATGAATCCACCCTTCCATATCGAAACCATATTCCCTTGTTCC
CAACTCCCAAGTCATACCGCCTCCAGTCCAATTAAGAATTAACACGCAAGCAGAGCAATT
AAACGTAACACTAATGATCACACAACAGCATAGAGAACCATAGAAGCAAAGGGAAATCAC
CGGAGCTCCTCCACGAGGCAGAGGAGGCCACGGGGGTCGCGGTAATCCCAGTGTGCCAAG
CAGCTCTTGCCCCCATTCCCGGACTCATCATAATCGACCAGCGGCTGGAATCCCTCGTCG
CCCTGCCCGAATATGACGTCCGGCGCCACCTTGGGGTGCATCGCATTATACAAGAAATCC
CCTGCGAAACCAAGATCAGAGCCGCGAAAACCTGACCACCGAACCCTAAGCCATTACAGC
GAGCGAGCGGGTTGGGTGCGTTACAGTAGACGTAGTCGAGGCAGAAGGGGACGGCGAGGG
TGAAGCGATCGGCGTAGCGGCCGTTGCCGCAGCCGGACCAGATCTGCACCACCTGCAAGC
GAG