Contig Data
morexGenes
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Map Locations of contig_40410 (6683 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_40410

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_55949 1 1845 bp MLOC_55949.1 Available Available LOC_Os04g39660.1, FRAME:+3, EVALUE:0.0, 13104.m03847 protein OsFBDUF22 - F-box and DUF domain containing protein, expressed
MLOC_55950 1 4899 bp MLOC_55950.1 Available Available LOC_Os04g39650.1, FRAME:-3, EVALUE:0.0, 13104.m03846 protein receptor protein kinase CLAVATA1 precursor, putative, expressed





CDS Structure of MLOC_55949






CDS Structure of MLOC_55950






Contig Sequence (6683 bp)

>contig_40410 6683 assembly3_WGSMorex_rbca.fasta
CCCCCCCCGCCGCCGCCGCCGCCATGCCGCCGTTCAGGCGCTGGGCGGATCTGCCGGCGG
ACCTCCTCTGCCGCATCGGCGACAGCCTCGACCTCAAGTGCTACGCCAGCGCGCGGGGCG
CCTGCACGGCCTGGCGCTGCGCGCTCTCGCCGCCGTCCCCGTCGCTCCTCGTCGTCCTTG
ACGACGCCAGGTGTCGCCCCTCCGCCGCCTCGCTCCCCACGCACCGCTCCTTCGAGCTCA
AGAACATCCTCTCGGGGGGCCGATGCGTCGGCTCCAGCAACGGCTGGCTCGCCCTCTCCG
TCTGCCTCTTCGGCGGCCAGAGCATGTTCAGCCTCTTCAACCCCATCACCGCTACGGAGA
TCCTTCTGCCGCCGCTGATCTACGAGAGCCGTTGGGTCTCCAAGCTCGTCTTCGCGCCCA
ACCCCGCCAGGGACGACTTCGCCGCCGCCGCCATCTGCGACATCGACAGGCTCGCCTACG
TCACCGCGGGGGCCAGGAGGTGGGCCATCCTCGATCCCGTCCGCCTCGCCAGCGGAGATC
AGCTCGCCGACGTTGTCTACCATGAAAAAGGTAGGGTCTACTGCCTCACTCGCTATGGAG
ATGTCCACGTGCTCCGCCTGCCGGAGCGCCGCCGCCGGAAGCCTATCGTCGTCGAGGATC
CAGCTGGCCCGTCAGAGCCAGTGATTACTTTAGGAAGTCCCGCACTCAGTCTTCAGGGAA
GAAGACAGCGCAACTTGCGCATGATCTGCTATGAACATCGTAGATGGAGGGAGCAGCAGC
TCCCAATTGCCACGATGAAGGCTGCCTTCTGCCCAGATGTGTTTATGCCTAGGAGAGTTC
CTCCTGGATCTGTCGGACCGGACCTAAATGCACCGGCCACAGTTGAGCCCATGTTGGCTG
AGGGCAACTTGCCGTTCGACCCTGCTACCTGTTTTGCAGCGCCATACAACACGGTGTCGG
TTTTCACTAGTGCCAAGAATCTGGTGTTCTGCGACGGTAACCTCTACCAAATCTGGAGAA
ATGCTAGCTGCACGGTTACTCTCCAGCTGCCAGGAGGCGGTCACCGCCGTGTAGCCGAGA
ACGAAATCTTGGTTTTGAGGTATTATCCCCGTCGCCAACCATGCTGGGATGCCGTGACCG
ATCTGGGAGGCTACTCAGTGTTTGTCGGGAAGAACAATGCGGTGTCCATGTATGCTGAAG
ATGTGCCAGGATTGAAGGGTAATTGTGTGTACTGGATCGGCGGGAGGGGTAGGGATCAGG
GCATGGTCTTTGACATGGGTACTGGGAGGTCTACACCTTGCCTTCCCGTTGCTGGTGCTG
GGGTTGTTCCGGGGCCTCCACAGAGCACAATCTGCTGGTACTTTCTCAGCGACATAGTGA
ATAACTGCAACATAAGTGCAGGAAGAAGAGTTTATCAGACCCGGGCAAGGGTCCGGGCTG
AACGTGAACAAGATTTGGAGGAGTAATGCGTCGCCAAGCAGATTGGCGACATAGTGAGCA
CCACCGGCCACATCGTTGGAAGCTATGTTTATCATGCCTGAGCAAGAGCCGCCTCTCATA
TGGAGAGGCACTCAAGAACTGGGCAGAGTGTAATTGCCTATTGTAGCCAATAGTTCGTTT
TAATTCATCTGTTTCCTAAAATAATTTGCTTCAGTATTGTTGTTGGTTGTTGGTTTGTAC
TCTAGTCCCTATCATCTTTGTGTGTTTATGTCCTGTAATGGAATAATTGATGTTGTAAAA
CTTATATTCATCATATTATGATGGAGTAAGAGAAGAGGACTTTAAGATATTTGCAAGTTG
GAATTGTTCTTTTATCGATGTATGGCATGTTCTTCTGAAGCTCGTTTTGTAGTACTTCAA
AACTGTTTGCTGGCTTTGCTCTACTGAAGCTGTTTTTGTAGTTGAAAGCTGCTGGCTGAA
TAAACATGTGAATCACACAGGCGTCTGATTTCTATTTATTCTGTCAATGTCATGACAATC
CCACAAATATACACGACACGAACGAACTACATGTTAACAGATGGTCTGAATTCAAAACAT
CACAATCTGAAGTGCTTCTCCAGTCAAAGGTCACATAGCAACTTCAGTGTATGGCTGTGT
CCGTGGATGAAAGGTATAAACTACAGCGCCTGCAGCGACCTCGCAACTTCATACATGTCC
GGCCTCTGGTCAGGCTTCACAGACGTGCAGCGCACTGCGAGCTCCAGGGCCGCCTTCATC
CCCTGTTGCTCTGTGCCGGGGACGTTGGGGTCGAGTATCTGCGATGGGCCGTCGATCAGG
TTGATCCGCCTCCGCACCCAGCTAACAATGTCCGAGCAGTCCTTGGACGACGGCTGCTCT
GCTGGCCTTCCGGTGATGAGCTCCAGGAGAATGACCCCAAAGCTGTAGACGTCCATGAGG
TTCGTTGGGTTCTTTGTGAAGTTTTGCTCTGGTTTCACGAAAATGGAAGAGAAATTCAGT
TAAGTACCAATTCTTCCTTCTTGATATGTATAAGGTGCAACTATGCAGTGAGGTTACTAC
CAAATCAATTTGGTAAGAAGAGCACATTGCAAATGCATAGGATAGGGTGCCAGCTTCTTC
AAAAGCATAGTGCACTGATTCAACTACAGAAATGCATACCTGGTGCGATGTAGCACTTGT
GATTCAAATTTGAATCCAAGAAAGATCGATAGGCCTTTTCCCCAAGGATTCGATGAATCC
CAAACCCAGCAACCCTGGGCTCAAATTCATCGGCAAGCAGCACATTGCTCGACATGAGAT
TGCGATGCAGCATGCGAGGAGCATAGTCATGATGAAGATATGCCAATCCTTGAGCTACTC
CCAGTGCAACCTTCAGCCTGTCGTTCCATCCCACCGCGAACTTGGGCGCACAGATCATAT
CATGTAAGCTTCCTTTCTGAAAGTATTCATATATGACGCTGACCTCTCCTTCCGAGTAGC
AGAAGCCTGCGATCTTTGCAACATTCTTGTGCCGGATTTTCGCCAGTGCTTTCATCTCAT
TCTTCACTTCTCTGAATGCCAGCTTGCCTGAGCTGAACAGCCGCTTCACCGCGACTTTCT
GCCCGTCTTGTAGCTCAATCAGATAGACCTTTCCAAATGCTCCTCTTCCGATCACATTCT
TGTCGTGGAACCCGGCGAACAATTCCTCTCCGGTGATCCTGATTGGGTGGAACAGCACCA
GCTTCCATGGGGAGGAGGACCTGCTGCCATATGTCCTCCTGCAAGCTGCAAACACCCCTA
CGGCCAACAGCGCCAACCCTGTGACGAAGGAGGCCACCGTCGCAGCCAGTGCTAGCCCCT
GATGCTTTCTCAATGGCGCATCGCAATCGCTCGGCAACCCAGGACCGCACAGGCCTAAGT
TCCCCTCGAGAAACACGGCGGGGAGGCCGGAGAGCAGCTCCGGAGGCACGCGGCCGGAGA
GCCGGTTGTACGAGACGTTGAGCAACGCAAGCTTCAGGTTCTGGAGCTCTGCCGGAATGG
CGCCGGTGAGGCCATTACTGGACAGGTCGATGTAGGTCAGCACCGGCAAGTCCCCGAGGG
AGGCTGGGATCGTCCCGGTGAGACCGTTGCTGGACAGGGACAGCGACACCAGCCTCTTGC
AGTTGTTGAAGTCAGGGATCGAGCCGGAGATGGCATTGTGAGAGACGTTGATGATGCTCA
TCGCCGGCGAGTCGCACAGGTTGTCCGGCAAGCTGCCGTTGAGCTCGTTCAGTGAGGCGG
AGAAGCGGTACATGGTGCGGATCAGGCCGATGCTCTGAGGTATCGCGCCGGAGAAGCTGT
TGTTGTCGACCTGAACCTGCTCCAGCCGAGACACGCCGCCGGGGAACTCGGGGAGCCGGC
CGGAGAAGCGGTTGTTCTCGGCGCGGATGACCTGCAAGTCCGGCAGCGACCAGAGGCCGG
CGGGGAGATCCCCGGTGAAGGCGTTGCCCTGCACCTCGAACCTCTGCAGCATCAGGCACT
TGTCGACGCCGTTGGGGAACGGCCCAGAGAAGCCATTGCGCGACAAATCGAGAGACAGGA
GCTTCTGAAACTTGAGGCCGAACCCCGGAGGAACGGCTCCGGTCAAGCTGTTCATGGACA
GATCGAGAGCCTCCAGTTGCTCCAGCCCAAGGAAGGTCTCGGGTATCGCGCCGCTGAACC
CCGACCCCTGCAAGAAGAGCCACCTGAGGCTGGCCATGCCGCCGAGCTCGGGCGGCAGCT
GGGACTCCAAGAACTGGTTGCCGGACAGGTCGAGGTAGTGGAGGCTGGTGAGGTTGCGGA
AGAGCGCCGGGTGGAGCACGCCGGAGAGGCGGTTGCCGCGCAGGTCGAGCACCTGGAGCC
CCCGCAGCGCGGCGAGGCCCGGCGGCACGGTCCCGTCGATGTCATTGCCGCTGAGGTCGA
GCGAGGCGAGCGAGGCGAGCGCGGCGAGCTGCTCGGGCAGCGGGCCCCAGAAGGCGGCGG
AGCTGAGGTTGAGGGAGGCGAGCGAGGCGCAGCGCGAGAGCTGCAGCGGGACGGTCTGGT
TGAAGGCGTTGGACGCGAGGCTGAGGCCGGCGAGGCCTGGGACGCGGCAGAGCGCGGTGG
CGTTGATGTCGCCGGAGAGGCCGAGGCCCTGGAGCTGGAGCGAGACGGAGGCGGGGTCGG
TGCAGACGACGTGCGACCAGTTGCAGTAGGGCGTGGAGCTGGACCAGGTGGCGAGGGCGC
CGGCGGGGTCGTGCAGGGAGGCCTTGAAGCTGAGCAGGAGGTCGTGTACTGGCTGCTCTG
CTTCCGCCGCTGCCGCTGAGGAAGAGGAGATGAAGAGCGGCGATAGGAGGAGGAGGAGCA
GGAGGAGAGGCAGGCAGGCGGCGCTGGTGGTTGCCATGGACGTGGCCGGCCGGCCGGCGA
GGCGCAGTGCAGGAATGAGTGAGTGAGTGTAGCGAGGACGAGGGTGGCCGAGCCGAGCGA
GCTACGGACAGTGCGTGCTGTTGCTGGTCAATGGCTGGCTGTTGTGTGGTGGGGCAGAGC
TTTTTTCACTGCGGGTTGGATGGAGTGGACGGACTAGAGTGTAGAGCAGCAGCACGTAGG
CGCGGGACTGACATGTGCTTTCCACTAGGCGAGCATGTCAGCTGCGGGCTGTGCAGGGAT
TTGTTTCTTGGTAGGCTGAGTCAGGTTGGACGGGGCAGCTTTTTTTTGCATTATTTGGCG
TGGAAATTTTGGACGGGACACGGGCGCTTTTGGACTTTGGAGTGGCGCCCTTGTCCTTGC
TGTTGGACGCGATGTGATGAGTGAGTTATCACGGGACGACACGGACAGGCAACTCACTTG
AGAGCATGGTTAATAGTACAGCCAAATGCTGGCCTTATAGCACATCTTATAACTAGGTTG
TACAATATTTAGCTATAAAATAATACTATTTTTTTATCATATATGATCCATCTTTCATTG
TCACAAAACATCTAGAAGTACGTGCTAGAGCTGGCTCTTCACGAAGAGCTCTTCACGAAG
AGCCCGCTTCCCTTCTCTCTCTTCTTCTCTCTCATCCAACTCAGTAAAAATATAGTATTT
TAATCTTTACAGCCCGCTGACTGTACCTTATTGTACTTGCTCTGAGTGATGCGGAAATGG
GCCGTGGATTCTGCTCTCGCTCCTCTTCGGGATTCGATTTCGCTCCTTTCCGGGATATTA
TTGTTTGCCTAGGGAAGTGAGGATTCGACTGGAGCATCACTCCCACCTGTGCAAAGCATC
TAGTTTTGATAATCCGGACACTCAAACGTCCACAGATGGGTCCGTCGATATTGATCGGTT
AGAGCAACTTCAACATGATGACTTAAACGGATATAAATTTTATTTTATTTTTTTGTCTGT
TTGGGTTATCTGTCCGCCTAGCGGACATGGGCGAACACGCACGAATGATGCATGCTCCCA
ATGCGCAGACACAAAAATGGACAAGCGCCGTCCATCCGCTCCTCGTCGCGTCGCCCATGA
GGGGTTTGGACGGTGGCGAAGATGCTCAGGCGAGGTGGCCGGCGCGAGCCGCAGCCAAGA
GCTCCAGGCGGGTAGTTGCTGTTAGAATAAGTTGTATAGAGATAGGAAAGTGTTTAAACC
TGTAATCTACCTCTATCTCTTCTCCTCTTTGGTCTCTCTCTCAAACCGATTCTCATCAAT
CTCTTGATTGATCTCTTCCTTGTAAGCCAAGGCAATTGCTCAATATATACCAATGCGGCC
CGGACGAGGGGTTTAACACTTCCAACCTATCTTACATGGTAATCGGAACCTCTTCCTCAT
AGATTGAAGATCGCATCTAGCTTACTTTTCCTGGCCGAGAACATGTCCACCACCGAAGCA
GCCATGACACCCAGCACCATGCTCACCACCACATCATCCTCCACCTTCGCCTCATCCTCC
AGCAGCACCCAAGTTGCTCTCGGACCACCACCACAGGAGAAGCTTTCGAGGAGAAATTTC
CTTATATGGAAGGCCATTGTGCTCCCACAAATCAAGGGCGCACAGATGAAGCTGTTGGGT
AACGTAGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACCA
GCAACGAGAGAGGGGAGAGCATCTTCATACCTTTGANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGAATCGTACTCGCGGCGATTCAGATCACGGTGTGATTCAGATCTA
GTGTCGAATCACGGCACCTCCGC