morexGenes - Barley RNA-seq Database

Contig contig_40396

Source Contig contig_40396

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_40396 (6392 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location

Predicted Genes from contig_40396

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_55930	1	1327 bp	None	Available	Available	None
MLOC_55931	3	3985 bp	MLOC_55931.1	Available	Available	LOC_Os05g40200.1, FRAME:-2, EVALUE:0.0, 13105.m04240 protein inactive receptor kinase At2g26730 precursor, putative, expressed

CDS Structure of MLOC_55930

CDS Structure of MLOC_55931

Contig Sequence (6392 bp)

>contig_40396 6392 assembly3_WGSMorex_rbca.fasta
TAGGGCATATTTCCAACAGCAGGTGCTCGAAATAAGCGCCGCGTGATGCCGTTTCGTCCC
GCACGCTAAACCATTTATGCCGCGTGCGCGTTTTTTCGCCTCCGCTGGAGTGCCCGGAGC
GACTTCGCGCGCACAAAAAAGTGTCTTTTTCAGCGCGACGCTTATATAGCGCTGCTGTTG
GAGATACTCTAAAGATTGCATTGCCCTCAACTCGTACATGCTAGGTTGAGAAGGTTACAA
CGGAATCAAGACCTCATTGTATATGCCCTTAGTCTACGTGCCTGAAAAATAGGGGGAGAA
GGTTACAACGGAATCAATCAAAGATATACATGCACGCACACGGCACACATATCGTTCAAC
AAGGACGACTTGCTACCTAGCAGCAATGTAGCATGCAAACTGGATTAATCACTAACACGC
GGGCAATCGAATTGAATAGTATCATAGTCGTTGTGCGCAAGTAATTAAGGAGCTCAACGG
CACTACCACCTACAACGATCGAGAGCTTGGCACGTCGTTACTTATCTGCATCAGACCAAC
TTTTTGCCGCCTCAGGAGTCAGGTCAGGTGATCCGGATGTGCTCCTCCCTGGGCTTGTCC
TCGGGGGAGGTCCTCGTCGTCGTCCCGGAGCCGGAGCTCCGGACCTCCTCGATCCTCGCG
ACCACCTCCTCCATCCTCGGCCGCTGGTCCGGATGAACGGCGACGCACGCCATGCCGACC
TGGAGCAGCTGCACCATCTCGTTCTCGGTGTTGGGGTGCCTCTGCAGGTCGACGTCGAAC
ACCTCCGAGGTCCACTCCTCGCGCACCACCGACTGCACCCACCTCGGGAGGTGCTCGATG
GAGTCGTCGCGACCGGGGGACCGGAGGGGGGCCTTCCCCGTCAGCATCTCCAGGAGCAGC
ACGCCGAAGCTGTACACATCCGACTTTTGCGTCGGCTTCCTGTTCTCGAGGACCTCCGGC
GCGCGGTACCCGACGAGCCGCGGGTGGACGTGGGGGGGCGCCATGAGCTGCGCGAGGCCG
AAGTCGGAGACGCACGCGCTGAGCCCCCGCGAGAGGAGCACGTTGTTCGACTTGATGTTG
CCGTGGATGAACTTGCCGCCTGCTCCGGTGTGGAGGTGGGCGATCGCCCGTGCCGCGCCG
ACCGATATCTTCACTCTCGTCTCCCAGTCCAGTGCTGCTCTTCCAGCAGATTTGTTCCCT
GTGTATTATTTACAATTGATGGTAAGTCTGTGATCATGTACTTTCGTCGTTTAAAAAAAA
TGTGGTACATCAAGATGAAAGTTAACTATACAGGTTAAAAAGACCAGCACCTATTCTTAT
CTACACATTTCACATTTCAGCATCCATAGAACGACAACAGCTCAAAAGTTTAAACAATTG
TAGCTACCAAACCACAATAACAATTCCCTCTGAATGTTCAGCAGAAATTCAGAAAAGAAG
TAGAGGTCCTACACTAAACAAAATCAGTGCGGAAGGTACTTGCTGACATCAGGTTGCACT
GCCTCAAAATATCTTCCATTTTCTTTCAGCACATTATGGCCAAGGCTCGAAAGGCAGCAT
ATAAGGAATGTATAGTACTCCCTCCGTCATGGTTTAGAAGGCACACATGAGCAATCTCTG
GGACCAAGGTACATCTTGATTGACTCTAATTTTTTTTGCAAGTGCTCACACAATAACCAT
ACGGCGTCTAACTATTTGAGAAGATAATGCACAGTAACTTATAGAACCACTAAAAGAGAA
GTGCATGCAGCCTACTAGTATTCCTAATTAATCAAGTATTAAATGTCATACGCCTTAATC
CTTTTTTATTCTGAAAATGCATGTAAACGGAACTACGCCTTCCAAACCGTGACGGAGGAA
GTACTACTAATGTTGTATGATCTTCTTATCTAATTCAGAATAACCAACTCAGAATTTCCT
ATATCTAAGGAATTGACTTCATCGTTCACTTCAAGATTCCGAAAGATTAACATAAAGGCG
ACCTCAGTTCTCACCATGCCAAAGTGCAACTGCCCAACTTGTTTATGCATAATTTTGTTT
TCCAACTCATGATTTTCTTAGATTGCATTGAACAAACTGCAGGTTCCTAATTATTTCATG
AACAATTTCACAGTGTTACATATTTGAAGGCAATTCCTAATATAGAATTGCATGTACTTG
TCATCTACTCCCTCCGTTCCTAAATAAAAGTTTTTTTAGAGATTCCACTACGGACTACAT
ACGGATCCAAATGAGTGAATCTACACTCTAAANNNNNNNNNNATACATCCATATGTAGTC
CGTAGTAGAATCTCTCCAAAGATTTATATTTAGGAACGGAGGAAGTAAGTAAGTGTTCAA
ACACCGGGTTTTGTTTCCTTCAAAAATACTGTTATTGCTCTTGTGGTATTTTAGTCATCT
ATATTCACAGCAGGGATCAGCAATACCATCAACTTGAACAAACATACTCGAAGCTCAAAA
CAAGTTTCAAAATTAAAACAGGCAATGAAATGCTTGATAGTTCAAAAAAGACTTGAAATA
AAGAACATACCATGCAAAGCAGCTGAAAGGCTACCCGGTGGAACATAGTCATAAACCAAG
AGCTTCTCATCCTTGGAGTAATAGAAGGCACGCAAGGGAACAACACCCTGGTGCTGACCA
AGCCTGTCAATTATCTCCATTTGCTGTTCGAATTCCTTCTTTCCCGCCACCACCTCCTTT
AGCCTCTTGACCACCACCGTCGTGCCATCCTCAAGAACAGCTTTGTAGGTCGTACCGTAA
CTTCCTTTTCCCAGGACTTCAGCTGAAGCCCTCAACAGATCCTCCAGGTCGAAATTATAT
GAACAGCCCTCAAAGAAAACTAGTTTGTTCCTCTCTGCTTCTTGGACACCACTGCTGTAT
TCTGGCTTGGATTTTTCTGCTCTTCCACCTGCAACACCCTTTCCTTTGGATGATGATGAA
GCTGCGCCAGGCTCTCCGCCTCCCTTCCTCTTGCAGATGCATGTCACGAGTATGATAATC
AAAATCAACAATATTGCCGCTCCTCCAGCAAGTATTGCAATTATGATAATTTTGTGATGC
TTTCTCCAAAACTTTTCCAAATTGCTTTCCTGGGAAGGTGGTGCATTAGGAGAAGGAGAA
GGAGCGGTTCCTGGACATGATTCCAGGGGAAACCCACACAGAAAAGCATTCCCCAAGAAA
GAACTGGCTGGAAACTTCTGCAGAGAAGCCGGAATGGGCCCACTGAGGTTATTGTAGCTC
AAGTTTAAATATCTCAGTTTGGGGAGGTGAAGATCAGGGATGGGTCCAGAAAGAGAGTTG
TTCTGGAGAGACAACCCAGTAAGCTCAGTCATATTTTGCACTTTCAATGGGATTTCTCCA
ACAAATGAGTTGTACGACAGGTCAAGGTATGCTAGATTTGATGATAGTGAAGTAGGTATT
ATGCCCGACAAGTTGTTGCGCTGAAGGTAGAGAGAGTGCAGAGAAGGAATGGATGCTACA
TCAGGGGGGAGGCTAACAGTAAGACGATTGGACCGAAGGCTTAACACCTCTAAGGCATCA
AGCTTGCCAAGTATGTTCGAGGGCATAGGACCAAATAGTCCCACTGCAGGTAGTCGCAGC
ATACGAACACGCTTCCCGTCTGGTGTGCATGTAACCCCAACCCAAGATGTGCAGACCTGG
GTTGTGAGGGTCCAGTTGATCTTTCTTGCATGAGGCAGAGATGCAGAAAATGCAAGAAGG
GCTTGCTTGTCAGAGTTCAGATCAGCTCCTTTGGCACAAGGAGGGTAATGAAGGAAGAAA
GAAGCGGAAAGAAAAGCTATGAGCAAAAGATGTTGCATTGTTAGGATGTCCAGAGAACAA
GGAGAACCAGAATTATAATCCGAGGGTCATCAATGTTTCACTCCTGCTGCACAAAAGGAA
AATGTAAGTCAAGAGTAAGTGAGATTGGTTCATAACAACAACAGTCAGAATCATAGAGGG
CGTATAATGTGCAGTTTATAAGTGGAAGAAACATAGTAGAACTGGAAGGGATTTTGGATA
CACAAAATGAACTGATGAAGCAAATGAGCTTCCCGATGAAGATAGTTACTTCATGATTAA
GCAACTAACTAAACATCATTGCTTTAGGGACCATGAGAAAAGGCAAAAGAGCAATAACTA
TTTCCTTCTGACATTGTAATGTCTTTATAAAGGACCAATAATGTAGAACAGAACTACTAA
GAGAGTTGCGCGGTTGGATGGAAGAAAATTCTTTCATCCATTAACAGTTTACAAGATGAA
TCTTCACTCATGTTTGCAATGCAGGGTCTGGTTTCGGAAAATGTAATACTCCCTCCGTCC
CAAAATAAGTGACTCAACATTGTACTAACTTTGTACTAGTGTTAGTACAAAGTTGAGTCA
CTTATTNNGGGACGGAGGGAGTATAAGTTTACTGGTCCTGCCAAATAACAGCAAATTTGA
TGACCAGAAAGGAGCCTGTTGTGAGATTAACAGGATTTGACACAAGTTGTGCCAGGCTAT
CAACCCCAGTTTCTAATGGCCAGGGAGATTACTTACACAAACGGTAAAAAATGCAGATTT
ATTCAATACTAGCAACATTACTTAAGACCCAAGGAACCTAGATACAGTATCTCAGTGTTA
CAAACACCAACAGCTTTACAGGCTTTGCATCATAACTGATCCGCGTTAGTGGCATCGAAA
GCCGGAGGAAAGCTCATTATTGGAACAAAAACATACACCCCATAACAAAATGACAAAGCG
CTACCACCCATCGACATGTCCAGGGTCCATCAGATTTTCTCAACTGCTACTGCATACCAA
CCTCCCCTCCCAGAGGAACATTACAACGAATGACACCCTTGTCTTTCCTTTAGACTAACC
GATTCAAAGCCCCACCCCTGTAGCTAATCAGTGCATCAGCGAGGCAGGTGCGATCATGTG
CTGCATAAAACGAAACCCACATACGTATCTTTTTACAAAGCATCCAAAAACAAACCCATA
AAATGAAACTCCTCTTTAGCCTTTTCTGCACTGCACAGGACACCTCAGTTTTCTTAACGC
CTAAACAAGGCGCTTGGGTACTTGCCAGAAAGGACATAGGGATAGTGACAAGGCGGGATT
CCAACAGGACTTGAAATAGATAAAAGGAAAGCTACGGCACACTGGCCAACTCCTTGGCTG
CACTGCACTAGTTGAACATGAGCAAAAGCAACTGCCAGAGAGCACCTACTAACCAAGGCT
CGACTACTAACTAGATGTAATTTTATCAAGGAACAAGCTAGCTAGCGCTTTGAATAAAAG
CAGTGGCACCGAACCAAAAGTCCAGCACATAAAGCAGGTGGTCTCAGATGCGAGCGGGGA
TGAGGATTCCTTTTTTTTCGAGGTTTCGGGGGGCGGCGTGGGGCTCTATGCGGATTATAA
TGGATGGATGTGTGTGATCATGTGTGTGATCATGAGCAGCACGGCACACTAGCTGGCACG
ATGGTAGAGCAGGGCATCTCAGGCTTCACGCCATGGGACAAATGTTCAAAGCGAGAGATG
TCGCTGTCTGCGCACTACATACAAACGTTTCCTGGAAACACTAGGTACAAACAGTCCACA
GTTGTAGCTGTGGAAATGCAGTGCAGTGAAGTACTTTTCTTGCAACAGTAAGATTGTAAT
TTGTTCATGCTTCCATGTTTCTCCTAGAGCATGTAGGTTGGAAATTGTACGAGTAGATTT
GCTCCTTGTACATTCCTGGCTATTTTACAAGTAAATTTGCTCCTTGCACAAGCAGTGGAA
GCAGGATAAAGAGTTAAAGACTACACGAGGACCTCTGAGCTCGTGACGAGGTCCAGGATC
ACAGTGAAACACTCCACGGTGGGTCCTGAATCTAACACTTCTTTAAAGAAACCCCAAATT
AATAGTTGCACTAGGAAACGAACGTTGCCCATACATTTTAGTAGTATCTTTAATTTTACT
TTCCTTGCAACAGTAAGGTTGTACGTAATTTATAGGAGAGTTCACGCTTCCATGTTCTCG
ACGGAGTCGGAGAGCATACTTAAGCTTGGAAGCTGCACAGGTAAATATGCCCATTGCACA
TGCCTGGCTCGCTGACTATTTTCTACGTTTCCAAGTTTTGACAGGTGCAGCAATCAGCAA
TGGCGAGTGGAAGCAAGAAATAAATGAAGATTAATGCAACGAAGCTAGAATGGCATCCAG
TTAATCTGCAGTGTGTGTGTGCGTGTGTGTGTTCAGCTCCTGAATTTAACACTTTTTAAA
AGGAAACCCCGAATTAGTAGCACCGGGAAAAGATACACATTCTAGTAGTAAGTATCAAAC
GACCGACCGCTGAGCCGTGCTCCACGAAACTGTGCAATTAGCCTTTTTTTAGAAGAAAAT
CATGCAATTAGCCGGGACAGAAACGAGAGGAA