Map Locations of contig_40365 (8668 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_40365

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_55883 2 2211 bp AK365223 Available Available None





CDS Structure of MLOC_55883






Contig Sequence (8668 bp)

>contig_40365 8668 assembly3_WGSMorex_rbca.fasta
GGGAGGGCGTAGGTGACGAGGGGGAGGGACGAAGCGAAGGGGACGGGGGCGGCGCGGTGA
CGGTTTTCCTTCCTCGCTCACGGGTGCGGGTCGGGCGAATCTAATGAAAGCTAAAACTTT
AATTTGGTGTGTCGTAGAAATCGCGGATTTGCGAGACAGACAGGTGGGTGCGTGCCCCAA
CGAGTTTTGAGGATATACTATATATGAAGAAATTTTAGTTAAAATGAAACTAAAACTTGC
ACACAAAGTATTTCGAAAGAAGAAAAGAAATGTAGCACCTCGTGGCCCATCTACCTATCT
CTGGTAGATGTACAAACATAAACATGTGCCTTTCTTTTTCTTGTTGATGTCAAAAGAGAT
ATCAGTATATGCAAAAAGGACGTTAAGAGACGATAAGAAGACGACAACCCTAAATAAATT
AATTTGTGATAGTAGTAATTATAATTACTAAGGGCATGTACAACGATGTTGACTCAGGTG
TCTGTAAAACATGCCACCTAGGATTTATAATGAGTTGAATGAAAGATAAAGAAGAGAGAG
GAAGAGGTCGTCTATAATTCTATAGACCGTCGAATCCCGTGAAAATCAGTGGCTAACGAC
GCTTATTTTATCGTTGTATCGAATGTCGTGTGGAAGACTGTAGTGATCGCACGATGCTCG
TTGAGATTTTTCAGGCGGACATTGGTTTCTAACTTTTTACATACACCAAAACAGACAACT
TGTTGTATGCGGTGTATGGGACGTGAACAATGACTATAGATAGACAGGTGTCTTTACCTT
TGTACATGCCCTAATAGCTGAGTTGAGGTTTCTTTTGTCACGTGTTGGGATAAATTTTTT
TGTTTTGACCTTTTGTCCTAACAAATTCTGAAATTGACCTTACTTTAAAAAAAATCTGAC
CTCCTTTGGTGACGCCAACATCTGTGACGTCTCGTTTGTATGAGAGACGCCAAGTTCCGT
GACGTCTGGTACGGACCTGCATGACCGGCTAACCCATTGAGAAGAGAAATCAATCCTTTT
GGTACGGAACCCTGGCGTCTGGTCGTGAACGAGATGCTAAGGACCCTCACATCTAATACC
AAACGTCAGAGACTTTGGCGTTTGGTTTCAGCAGATCACACAAATATACTTTTGGTAATA
TGTGCCACGTCATCCAGACGTCAGGGTCCTTGGCGTCGGACCAGACGCCGGGATCCCTCG
CGTCTGATACCAAGCCACGCACAAACTTAACGGGTCAATCGGTCATGCGAGTCCGTATCA
GACGTAAGGGACCTTGACGTCTTCCATGTAAACCATGCGTCAGGGATGTTGGGGTCATCA
AAAGAGGTTATATTAAAACTTTTTTTTAAAGTAAGATCAATTCTGCAATTTGTTAAGACA
AAAGATAAAAAAAAAATGTCCCACACGTTGTACCCAGGGATCCATGGAGCGGATACTACA
AGGAGAGCGAGTGAGATGACGTGCCGTTGCAACCAAGCGGCATGCCCTTGTCCCGTAATT
CAAGTGTGGTGTTAATGCGCCGGCCTGTTTAAGCTAAGGTATCGCCGTCAGCAGCGACGG
TGAGTAGTACACTCGTGTTGCTTTCTCATTAGTTATGTATAAGCACGCACAGTACGTACC
GCTGACGGAAGCAAATGAAATACTAATAACATAACAAGCCGACCCCAATGCATCCACATC
AAAAATCACACCGGCCTCCAGCAGGGAAAACGCCTTCCGCTCATCAAAAACCACACGCTC
GCTCGCTCGCTCGCATGTCCCGCCCTACCGTACTCCACAGTGTCTCTCACAGTGAAACAG
TACGACCGTTGCACTGGCGACGCAAAGGACATGAGCCGACGGATTTACTCCAACAGTGCT
TCCGCATCCGTTCATCAGGCGCCCACCATTTTTCGCAATCCACACAAAGTAATGCTTACT
GTGGTAGCTCAAAAGCACAGTGGATCATGAGGGTCAAAAAAGGGACTCAAAAGTCAGGCA
TGAACCTATTTCCTGAAAGCGTGAGGCAGGGCCTCGCTTTGGATCCGAGAAAGGCAGACC
AGGATATCCCCAGAAATGGAACAAAAACCATAGTAACATTGATAATTAAGGGAAAGAAGC
TGGCTGAAATTTTATCTTTATATGTATGGTTTGATTATGAATGAAGAAGAATAATAGGAG
AAGGACAGGGTGGTGGGTCAAAAGCCAGACAATTAAGACACCCAGTGGATTAGCAGTGAA
GAAAATAACAAAAAAGAGGTCTCCTTCCTCGACTTCTTTTTCCTCTCTTCTCTCTCTCTC
TCTCTGCAAGAGAGGGGGAGAGGGAGTGGGAGGAGACTCCACCACACCAGCAAAGGCAAA
GGGAGAGGGAGCACAACAAGAGACACAATTCCCAGGAAACCGCCGCCTAAAGCTTCTCCT
CCCTTTGTCTCTCTTCGCTGTTGCTTCCAAATCTCTAATCTTTCTCTCTTTCTTTCGTTT
GTTCCATTCCAAATTATCTGTGCGGGAGAAGATCCAAAAGATACAGGAGAGGAGAGAGAG
AGGGGGGGAATAAATCCTTTTTGGCGAGATTCGTGTGGGGGAGAGACGAGTTAGGTGTCA
GGACCACTCATAAATTCCGCCTCTTCCCTTCTTCTTCTTCTTTCAGATCTGCTCCGTGCT
TCCTCTTCCTCCTCGCATCGCTTTTGCCAACCCAACCAACCAACCAGCCGTGCTTCTCGC
CGGAGAGAGCAGGGCAGGGCGCCGTTCTTCCTCCCGCTTGGAGAAAAATCTTTCTTCTCG
TCCGCCATTCTTTTTTAAGCTTAGTTTCTTCCAGTACGAGTTTTCTTGTTCCTGTTGAGT
TCTTCCTCTTCCCGTGCGAGCCAAACTCCCACCCTTCTTGGAGCAGAAATCGGCCTTTTG
TTTTCTTGCTCGTCTCTGCCGATTTCTTCTTGAGACATAGACGCCCTCCTTTTTCCGCCA
CAAGCTATCCTCTCCGATGGGCAACGCGTTCGCGTGCATGCCGCGCAAGGAGCACCGGGG
CGCGGCCGCGGTGTCGCGCAGCAAGCGGATGGGGAGCGCCCGCCCGCCGCGCGGCGGCGC
GGCCAAGCTCACGCCGGCTGAGGAGGAGCTCCTGCACCGCCAGGCGCTCGCCATGGCCAT
CCACCAGCACCTCGACGCCGGCGGCTCCCTGTCGCGCCGCATCGACGCCGGCGCCGGCTC
CATGTCCCGACGAATCGGCCCCGGCTCCACCAGCTCCCGACGCCACGGCAACCTCCCGGA
CTCCGTCACCAATGCCACCAAGGCTGTAAGCCCTCCCCCGCCTTTCTCTCTTTCTGCTTC
ATGCTCCCTCCCTTGTAGGTTGTAGCATCCTTGCGTCTTGTTCTTGCCTAGAAAAATATA
CTGTCTACAATGTTATACTTTACAGTAGTAATTAACAAGTTCATTGTCAAAGAAAGTTCT
GAATTTCTTTGTACAGAGGTTGGTCCAGTTGCAAACTGTACTTGGTAATGTCTAGTGCCA
AACTTTTCAACTGCAAGAGTCCTTGCGGGACCAGTTGGCCATCTGGCCCTAAATGATTTG
GCCTTATCATACTGTTGTTGTATGCTTTGTTGTTTAAGTTGTTTGGTCGGCAAAATTCTG
TCATTATCAGAGTGGTACCACAGCATTGTCAGTTGCCTGGTTTGCTACATAGCTAAATGT
CTGGTTGCTCTAGGTTTCACTAGTAAATTGGTTCTTTTTGGATTGCTTGTATATGGGAGA
TAATTCAGTGATATGGATGTACTTGTATGTTTGTTGAAGGACACATTCTTTTTCTGTAAG
GAAGCACCTGCATGTTTCTAGTCAGTTTCTTCATGGCTTCCTTGTTGGGGTTGATTTTGA
ATTGCAATCAGCAGTAAGTTCATATTAACCTGTAGTTGAATATCGGAGGTTCTGAAGTGT
CACTGGGATAGGATGATGGGTTTCTACACTTCCTTGGTCCTGCTCATCTTGTTAGTACTA
AGATTTGTTGATGTAAATCTACCAATGGCGACATGCTTTGCTGTTCACATCGTTTTTTTT
TCTTAATGATTAATTTTATGACCTGTTAATAGTTTGAGCTTACTCTAAGCTTCTAGAATC
TCGAACCCATATTTTGGAAATTTGAATTATATAGATTATTATTCATATTACTATATGTTG
AAAATGCATCTTTAGCACAACTGTTGTTGATTCATACATAAGATAGGTGAAACCCTACAA
GTTACCTTATGTTATGAGTTGGACTACAAGACAACACCAAGTCTATGAACTCAACAGCTG
CCTCACTATTTGATAGCATGTTCCCATTTCTTACAGTGGTCTCTCTCAGATGATCATTCT
GTTTGCAGTTTTCGTGCATTTCACACTCTGATATGCTTCTACATGCACATGGGCATCTGG
TGGTGCTTTATCTTAGGAGTTAGGACCTGACAATACAGTAGAAGTGTTCCTCGTTTGCGC
TTACACTATTTATTCTTTGTAGTTTAACACTTTGCTCTAGCAACTTTGGACTGGTTTGCG
GTGGCTGTAGTCTATTTTCTATCTGTTCTTTTGAACTGATTTCAGTCTTTCATGCTTCTT
GTTCTGGCATATTTTCAGGTCCAAATAGTTTTAGAGAACTTAGAAACCAAGAAAATTGTT
CTTGTCCACGGGGAAGGATTTGGTGCTTGGTGTTGGTACAAGACCATCTCTCTCTTGGAG
GAAGCTGGCCTCGATCCTGTTGCCTTAGATCTCACAGGTTCAGGCATAGACCACACTGAT
ACAAACAGCATAGCTACATTGGAAGAGTACTCCAAACCACTAATTGATTACCTCAGTAAA
CTCCCTGAGAACGAGAAGGTGAGTACTGCATCTGTTTTTCTTCACACATTCATTAATAAA
TAGAATTGGGTATCTGAGTGTTGTGTTCATGTCGACGCTAATGCAGGTTGTTTTGGTCGG
TCATAGTTGTGGAGGTGCAAGTGTGTCATATGCCTTAGAACACTGCCCAAAAAAGATCTC
AAAGGCTGTATTCCTTACTGCCACAATGGTAAAGGATAGCCAGAGGCCCTTCGATGTGTT
CTCTGAAGAGGTATGCACTCCTCTTATGTGTCCGTGTGCAGTTGTGTGTTCTTATTGAGT
AGTCACAAACTCATGTGACGTGGTATTTTGCAGCTTGCGTCGGCAGATGTTTTCTTGCAA
GAATCACAGTATTTACTTTATGGAAATGGGAAGGACAAGCCTCCAACCGGGCTCAGGTTT
GACAAGCAGCAGATCAAGGGGTTATATTTCAACCAAAGTCCTTCCAAGGTACATACATTG
TACTCTATCGAGAACTACTGTCACATACATTGCCATGCCAATCTTCTGTTCTTTCTGTGT
ACCAAGTCCAGCTGACAAGTTTGCACGCGACGTTGCAGGATATCGCGCTGGCCACCGTGT
CCATGAGGCCCATCCCTTTAGCCCCGATCATGGAGAAGCTGTCCCTCACGGCGGAGAACT
ACGGCAGCATCCGCCGCTACTTCATCCAGACGCTGGACGACCGGATGCTGTCGCCCGACG
TCCAGGAGAAGCTGGTCCGGGAGAGCCCGCCCGACGGCATCTTCAAGATAAAGGGCGGCG
ACCACTGCCCCTTCTTCTCGAAGCCGCAGTCCCTCCACAAGATCCTGCTGGAGATCGTGC
AGATCCAAGCTCCGGGGGCGCTGCTCCCGGGCAAAGCAAAGACCCTAGAAGAAGAAGAGG
AGGAGAGCGCCGAGAAGTCATCGTGACCGTCCGAATGCCATGCGTGTACATGAAACGAGT
AGCACATAGGTTGCGGTTTGCTAAAGGAGAAGAATACAGGGAGGGATTAATTGGAGTCGG
TCAGTCAGTCAGTCAGCCAGAGATCAAAATAATGTAGTTAGTTGAAGAAGCGGGACATCT
TTTTTTCTTTTGTGATGAATGATGAGGTATAGTGTATGGGCCTGTGAGAGATGTTTTACC
AATGTGAATTAAATCTTGAGCCGTCATCAGAAGTTTGGGACAGGTATAGTGTATGGGCCT
GTGAGAGATGTTCTACCAATGTGAATTAAATCTTGAGCCATCATCAGAAGTTTTGGACAT
TTTCTTGCTGGTTCATGGTTTGCCTTTGCTCTCGATCTACAGTACATCCATGTTTGTCTA
ATACACTCCTGTCCTTTGAGTAATGTGCAAGGACAAGTAACTGGGCCTGGCGCCGTCCTG
TAAAGACGTTTCTGAATCACATTCCTTCTATAAGGCCAACTCGAGCCCACGACACCAAAC
ACGTGCCCGTGTGTTCAAGAACGCATCTTCCCTCACAGCCAATATGTTCATATATTCATA
TACATCAATCATCAATGTTTGCATGTTTAAATTGTCTTAAATAAAAATAGTTTTACAATC
TAATCGAAATTGTCTCAAATAAAATAGTTTTACTACCAAATCAAAATTGTCTTGAATAAA
CACAATGAACCAATACATCTATTGGTTGTCAATGTGATTCCACATATGCTCAACCAAGTT
ATTTTAAAGCTTCAAATGAGTGTGTCAATCACGCATTTCATGATGAAATTGGATAAACTG
TTCAAACGTGGTCGGTTCTTGGTGTATGGGTTCAACATTTTCACCTTGAAAATCAAATCC
TTGGTCGAAGATGTTGTATAACGCTCGTCCTCGACGATCATGTTGTNNNNNNNCACACAA
GCAGTCATCACCTTCCAAAGCTTTCCTTCATCCCATGTCAGGGAAGGGTTTCAAACGATA
CCGCATTAGGATTGAAGCACACCAAAAGCACGCTCTACATCCTTTCTAGCACTCTCTTGC
ATTTGGGCAAATTTTTGTCTCTTCTCACCTTCGGGTTTCGAGATTGTCTTCATAAAAGTT
GACTACTCAGGATATATACCATCAGCTAGGTAGCATCCCTTGTTCTAGTGGTGACCATTG
ACCTCAAAGTTGACACGTGGGGAGTGGCCTTCTGCAAGTCTTGCGAAGACTGGAGAACGC
TGCAGCACATTGATATCATTGTGAGAACCTGCCATGCCGAAGAAAGAATGCCATATCTAA
AGATCTTGTGAAGCCACCGCTTCTAATATGACAGTGCACACTTTCACATGCCCCTTGTAC
TGGCCCTGTCAAGCAAATGGATAGTTCTTTCACTCCTAGTGCATAAAATCTATGCTGCCA
AGCATGCGTGGAAAGCCTTTATCGACGTTGATCGCCAACAACCTTTCTGTATCAGCGACA
TTTGGCTGCCTCAAATGCTCAGGGGCCAAACACTGCCACCACGACCTTGCAGAAGTTGTA
CATTGACACCAAACATGTGGACTCACTCATGCGCACGTACTCATCCACAAGATCACCTGG
AATTTCATATGCAGGCATGAGGATGGCCGCGGTGCATTTCTGATAAGAGAAGAATCCAAG
CTTGCCAAGGGTATCCGTTTTGCACTCGAAGAATGGGCCATGACGAACCACTCCCTCTCA
GATATGATTGAACAAATGCCTTGCCACACGAAAACGGCGACGGAATTTCTCCAGTTTGAA
GAGCGCGGTATTCTCAAGGTAATCGGCATAGAGCATGGCGTAGCCTCTCTTTCTATTGCG
GTTCAGGTTGGTAGCACGGCCCAGGACTGACCCCTTGTACTGAGGCCGCTGCCTTTCAAT
GTGGTCGCGAACGACTAGTGCAACCACCACAAGATCTTCATCATCCGAAGACGAATCATC
CAATGAACAAAGGAAGTGGTTGAAGAAAAATTCATCTCCACTGTCCATACCTTTGTGGGC
AAAGTGTCAAACACCTTGCGGTTGTGGTGTCAAAGAGTCCGCGGAGATCACCTCGATGCA
GCAGGAGCGTTTGGCGGCCGGCTACAAGTCGCTCTGGAGCACCCTACGGAAGCTGTCGTG
ATCGATAGGCGTCGCCGACGGTCGTATCCTCTCCGGCACCGGATACAACGGAGACGACCA
AAAGTCCTCCAAACGACGGCAAAAACTCATACGAAAGCGTAGGTGTGGTGGCGGCCATGG
CGAGACGTAGTTTGGTATGGACGATCGGGGGGTGAGCAATGAGGAGGCGGCCGAAAAAAT
AGTGGTGGCGCCGGCAGCGGGGTGGGACGGGAAGGGCGGGTGAAGGCGTTGGAGGTGATT
GAAACGCTAGTGTCCCTGACACGCAGGCCACGGGGAGGACAAGGACGCGCATCCCGCTCG
TTTGTGCGCTGTTCGTTTCACCCCAAACGCGGCGCATATTTGGTTGGAAAATGGGTCAGA
AAACGAACAAAAACCAAACATTTGTTCGTTTGGGATCGTGCATTGATGGTTGGTTCGTTT
AACTTTAAACGGATTAAGACGGACCGGACGAGGTCGCGCTGGAGTTGGCCTAAGCATAGA
TCAGGTTTCTTGTTTCTGCCGTTTGCTTGCTAGCCCACGTGACAGCGTTATTGTTGTACT
CTTGTTTTTGGTCGGGAGTGTATACATGTTGTATGTGATAAAACAAGAAGCTACACCATA
AAATAGGAAAAAACAACACTTTATTTTACGGAAAAAGTTTACCATCATCCGACGGATAGC
ATGGCCGCATCCGCTACCTTCTTTATGTGACACGCGTCCAAATAAGGGTCATGTCTTCGT
CAAATACGTTACTGCAACTAGGGTTGTGTTTCTAAAACATATGCGATGTTGCAATGATTT
ACGACCGGTTTATGTTTTGCAGCAAAAT