morexGenes - Barley RNA-seq Database

Contig contig_40341
Source Contig contig_40341
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_40341 (9079 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_40341

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_55862	2	4558 bp	MLOC_55862.2	Available	Available	LOC_Os12g01190.1, FRAME:-2, EVALUE:0.0, 13112.m00023 protein RNA recognition motif containing protein, putative, expressed
CDS Structure of MLOC_55862

Contig Sequence (9079 bp)

>contig_40341 9079 assembly3_WGSMorex_rbca.fasta
TAGGTTTGTCTAAAAATGAATGTATCCAAATACTAAAACATGACTAGATACATTCATATA
TAGACAAATAGACAAATGTAAGACAAGAATTTTGGGACGGAAGGAGTACCAAATAAGATG
GAACTGCTTGTTCATCTCAAAACTAACATACCGTGTTAATCCAACCATACTACAAAGATG
ATCCAAAAGCTTGCTTGGGAAGAGCACATAATAGCTACTCCAAAACATCAAATGTACTCA
AAACAATTGTCAGTTGAGCCACAGTGAAGTACTAACAAACATCAAATTTACTCAAAAACC
TTCTTCAGTTTGATGCCAAACAATTGTCAGCTCAGCTATAGATGATTGTCACATTTGCTT
TCAGTTTTTGGTCCAACAAACCCCACACCAAAACATGAGCTTTCTATGCACCACAGGACC
TACCAGCGGCAAGTTACAAAATCATGTACAAAGGAGTCCCTCGATTCCCCAAGGCAAGAA
AACATTTACACAGCTACAATGGTGAAATAGAACAGAAGCTAATCGGTGTCTCCCTTCTCA
AGCCAGCTTCCATATACTTCAAGGACCACCTGTTTCATGTATTGACTTCGCCTAGAAAGG
AACCTGATGACCAAGCAAGGGAACAAGCAGCGGTCATTAACATGACGGCACATCCAGCAA
CGTCCACAACACCACACAAAGCATAATTATAATCACACAAGGACAAAAAAAGGGACGCAC
ACACGTATATCAAATTAGTGGATAAAATGGTGGAAACACATACCTTGTGCTTGGAAGATA
TAGTTCAAACTCAGGATCGTGTCGGCCCATTTGCATCAACTGCCTTCCAGTAGAACTTTC
ACGTACCAGCTCATTAGCACAACCATTAGACAAGCACTGTGCAACCAGTTACTTTCAGAA
CAAGACACAGCCCAAAATAGACGCCGAGAGGTCAATATTCACCTTCAAAGACAATTAAAG
TCCAAAGGTTCTGTTATACATATCATTTGAACCCAGCATGTGAAAGTTGTTAGCTTCAGT
TGGATATAACATCCTCGACATGTCCGACATGGGAACATTATTCCCCTGTCTCAAATCACT
CCAGCCATCCCAGTGACCATTTGCAAGCTGCGAGTTTCTAGGTTGCTGGAGTGACATCTG
TGCATAAGGGGATAGAGAACCATGGTTCTGTGGCAGAAGTCGGGATGCCAGATAATTATC
ATTCTGAATAGGGTTGAATGCATCTTGAACATGGTCAGTATATCTGAGATTTTGATGAGA
CGGCATGCTCTGCTGCATAAGTAGTTGAAGCCTTGGATCATTATTTGATGTCTGCAATTG
TGCTGGAAAAGGAGTGTTTTTCAAATCCAATCCTGAATCACCAACAACTGGCATCCGCCC
TTTGCCCACGGCCAATATAGCAGGATCAATAAATTCTATGTCACTCGTGTGTCTAGATAT
CTGAGGTTGATACTGATTGGTGTGGCTACCAAAAAGATTGTCAAGTAGACGAGTTTCTGC
CAAGCATAACAAATGTATGAGAAATTGAAATTATTTTTGGTTTTGGAGAAGCAAATAAGA
TAGGGAAAGTAAACAAACCTGAGAATGTGGAGCCATACGCTTGGTTAGACCCATTCTGGG
ATGAAAACCCACCAGAAAAGGAAGAAAACCCGGGAGGAATATTATTAGACCCATCCTGGG
ATGAAAATCCAGAATTAAATCCACGAGACGGGTTTGACCCAGCCTGAGATGAAAATCCGT
GAGGGGGATTAGATCCAGCCTGAGATGAAAATCCATGGTGGGGGTTAGATCCAGCCTGAG
ATGAAAATCCAGAAGGATATCCATGAGGGTGATTCAACATATCCTGAGATGAGAATCCTA
AAGAAAATCCAGGTGGGGGATTCAACCCATCCTGAGATGAAAATCCAGGAGGTGGGACTC
TAGCTGGTGCCGCGAATCCAGGAGGTGCAGATATTTTAGACCTTGAAGAGCCTGAGAATA
AAACACATCAGCAATGAGCCATTGCACACAGAAATATCACAAATATAATGTATGGTATCA
CAGATAATCAATAACCTATTTACATGAGTTGCAAGGTTTACCCATGCTCGATGAAAAATA
CTGCAATGCATATTGTATATTCCTTTAATATGCAAGTGACAACATTTGAAAGAAATCAAT
CAAGATACAAATCTATTAGAAAGAACTTCCAACTGCGGCACAAAAATACTTTCCTCTTCA
GTGAAATACAGAACACACAAGTATCATACTCACCAGCAGTTGCTATGTCTGACATAGCAA
GATGATTGCTCTTCGAAAAATCTTCCTCCAGCGATTGGAATGCAACACCATTCTGATAGC
TGTTGCCATGAGAATTCTGGGATAGCAAGCTAAAATTCTGATCACTGCCACAATTTCTGA
AAGATGAATCTTGGAAGTTCCGTTGGTTATCCTGTCTAGCAAACGAAAATCTAGACTCAT
TACTGGTGCCTTTTGATTTCCATGAAGGTGCATTGAAAAGTGCATCGTTTTTTTCAGATT
CATTAAGCATCTTAACAAAATTGTTCGCCGTTGAATACGACTCATCCCATGGATCAAACT
CCAAAGACAATATATCAGAAATTATGCTGCCCTCGTCTTTATTTCCACTTGCAGCATTGC
CAAAACTGCCTATGTTATCATTTCTTGCTGCATCCAGTGCTCTATGCTGGTGGTTTCGCA
TACCAGAATGTTCAGAAACCATATCAGGTGTATACATAGGTCCTAGCCCCTCTCGACGTC
CATTCAACAGGGTAGAAGCATTGTCGGTTGAAGATAACCTGGTTTGCAGCATGGTGCCAG
AAGTTCTACCATCACTTGTCGAAGTAGGGTTAATTTCTTTATCATTCCACAAAGAAATAT
GTGATGTGTTCGCAGTGGCATGGGGTTTATCAGTGGCCACAGAAGAATTCCATATGTCAT
TCGAAGGAGAAGCCACACGACAACTTTGCAGCTCTGAGCTCCAGTCAAGATGCTTATCAG
AACTAGATTGACAAGAAAGTACGGAGTCCTTATTTTCTGATGATGAAAGACCGGCAAGCT
TCAAATGAGATTGTTCCTTGTTCAAACTTTGACTCAAAGGCACCACAACGGAAGTGCTGG
GGACTGCACCCAGCTGTTGGTTTTCTGCCATGCTATGAACTGTATCTTTGCTATCTAAAG
TTACTGAAGTTACCCCAACAGACAACTTCTCGACTTCTGTGTCCCCAGGTCTACTCTCAA
CATCGTCCCTCTTTAGAACAGAACAAGATATTGCTGAATGTGGCACACAATCTGCAAGAT
TTTGCTTGGAACTGTTTACAACTTCGCCATTCTTTGGTGATGTTGATGACTTAGACCCTA
TCTGGCCCGATTCCATTGGTTTTGAGGATGCTGAAGGAATAAACTTTCCATTTACAACTT
GCTTTTCCTCACTTCCTTTCGAGGTCTCATCTGATGCTACAACTTCATCATCATTCCAGG
CTGAAGGTATTGTAGAAAAGTCTATGTCCAACGAAGACTCCAGTGATGTCACAGCTTGAG
TTTCCTTTGCAATACCAGGTCTATATGGCTTCAAGGTTTTGGACAAAGTATCTCGTTCTG
ATACTTGCCGTCCTTCAGTAATTTTCAGTACTGCACTTGTATCATCGTTCCATGAAGAAG
GTAGTCTTGAATTCGAAATTATAGAACTTGAAAGTGAATTACTATGCGCCTCTGATTTTG
ATTTATTAAGAGATTGCGAGGATGCCACCTCAGTCGCAGTTGTCCGTGTGTTCAAATCAC
GATGCCCCCTGTACACACACAAATTTAGCGACACGTTGCATTTTAAATGTGGCAGAACAG
TCTAGGGAGGAAGCATACCATGAAGTAGCTGATGGAAGCGTGGACCTCCCTGAACTACTG
TTTGGAGGTGACAGTCTTGACTGGCCTGTGGTATTCTGCACAGAAAAATAAGGCCATTGG
TGTATCAACATAGTGTAAACCAACAAAAACAGAATTATCAACAAAATATCTAGGTAGGAT
AAAGCAGTACGAAATCAAGAAAAAATAATTTCTAATGGTCCAATATTAAAACATACAGTT
GTCCCATTCTTGATTGTATGTTTGGCTGAAACCACCGCACTGTAAGAGAAATCCTCTGCT
GGAGGAGGCAATACAGTTCCTGCACGTCGTTGGGAAACACTAGACGCCATTTGAGGAACC
CTACTCCTGATAGAAATATCAGAAAATGAGTTGAAATACCAACTGAATCTACTAATTTAG
TTAATTATGTCTAACTGAGACAAGAGCTCGTATGGAACCAAACTACCAAAAATAAGTAGT
AGTACAATATTAGACATCCAAATTCAAATCCAATTCCGGCAAAAGGCAAAACTTCCTAGT
AAGCCATGGCCATTAGCGTAGGGAGAAGCCGAACATTAGACCAGGAGCTTCTTCTAAAAT
AAAGAGAATATATATACAGCAAGAATGCAAAATTGCAATATAAAATAAAAATACAAGCAT
TATATGAGCCCGGATTTACATGCTTGGAGCAGAACAGATGGAGCAAGCAGAGGAAGAACA
GTGGTTCCACATTGCAAGTTACAAGGAAGTTGAGTGTTACCTGGTATATGCTGAGATTAT
CTCATCTTTAGTGAAACTATCCTCCTGACTGCCTACATCATGCAAATAGAGACAATCTGG
ATTCCCACATGTCTGAGAAAAAAAATGGCAAAGCACTGAGAAAGATATCAATAGGTAGAG
TACTGGTAAAGGCTGTCAGAATGAAGCATCAATTGTACCATGTTCCGCAGCCATGCATGG
CAATATTTCGTGGTGCCAAAGCATGCTCTGCAACAATAGAAAAACTTTAGAATAACAATA
TTGTGCAAAACTGCTAGAGAAGATACAGGGTATAAGGCTAACCTTAGCACTTTCCCTTCC
AAGACAAAATTGTGTACAGCCTGAATACACCGGATGGCCTCTTCTTCTTTGGCATAAGTA
ATATATCTGAACATATCACAGTAATAACTAGTGAGCCAGCATTTCAACACATCTAATGGT
GTCTACAATTATGGAGAGAATAGGAACCATACATCTTATGTTGGTTATCCATTAAGAGTA
TAGCTACTAAATAGCTCTGAGCCTCTGAGTAGACATGATGGACATAGTCCACCAGAGTTT
CAATTGTGGGTCTCCTTATTTTCAGGAAAACTGATGTTTCCTTTAAGCCTTCTTTTGTTT
CTAAGTGTTATTAGATAACTAAGCTGAATAAAGGTGTACTACATTCAACAGACTCAAGTA
ATTCCAAAGACCAAGCTTTCCATATTTTTAAAATATCAGGACCATAAGTACATCAAGCCA
GTGCTATACGACTCCTGAGAGAAACATGGAGTACCCAAAACAAACGTGAAATTTTATACT
CACCAAAGAACTACAATCTACCCTAAGGAAACTGATAGTTTCAGAGGCAAAAATCTGAAC
TAGCATCAGTAAACATGGGAATGCCTCATCCAAAATAATTTGGTCGATAAATTCATGAGA
AGACTGAAACAGGCACTTCTATATATATTATACAAGATTCCTGGATTTTACGACACTAGA
CAGCTACATCTTTCATGTGGCCTATAAAGCTATCAAATGTTCTTTACAGATGCTATAAAA
TTCTAGCGGCCCTCGGTCAATACTTAGATTAGATTAGCCTGAAATTGACGTGGTTGTATC
AAGGACATGTCATGTTAGAATCGACGATTATTTGAACTTACTTTTGATGGAAAACCACCT
AATACACAACCAAACTCTCACTGTACTTTCTTAGTCGCATACAAACAATTATATAGCTCA
AGCAAGTATTGAAGGCTACAGGCACGTATAGTACACAAAGGTAGGATAGTAGTCACTCGA
TATATCAATGTGATTGTAGCATCGGCCAATATGTATGCATGTTGAAAAGATCATTAGTGT
CATTTGTAGACATACACGCTGATACCGTTGTTTGTTGATGTCTGCTGGGAAGGAGCCCCG
GTAGGACGTGAAACTGAAACCTTCAAAACCTTTCCATACTGACCAAAGTATTCCCTGCGC
TCAAGTACCTAAAACAAAGGATAATAGTAATGTTGGCGTCAGAGCTAGAATTTACAGTGT
CACTCAGCATAACAGAATCCAAATCTTCTCTCAGAAGAAAGAATCGAGACATAAGGAAAG
AATAATGTGCTCACACTCTCATTGCATAAATTTACAGGTAGCCCAATTATGTAGACCAGG
TTTCTCTGTATAACTCTGACACTGGCCAGATGCTTCTTAGCTTCCACAGTTAGTGTCTTT
GACTTAACCTTTTGGGTCTTCTGCTTCTTGTCTGTATTTTTATCTGCTACCGTTCTGTAT
ACATGGAATGAACGTAAGTTGCAAGTCTATCATCGCAATATACATGAGGAAAGAGTTTTC
GCGCACTGAGTAATCTAGAAAAGGAATCTCCGGTTGATGGCTTAAGCATGGCAGCCCTCG
GAGGCAGAGAATGCATATAAAGTGAAAGTTGGAGTCGGGGATTACCTGTCACAAGTGGCA
GCCATCTTAACAATCCTGTCCTTGTCATAGCGTGTGCGGCAGGCAGGGCAACGACCCTCT
GTGTCCTCTTTCTCAGCCATGTCAATGATGTGGTGCCAGCACCAGACACAAATCTGCAGA
GTCGCATACATACAGAAACAAAACAATGAGAGAGCGTCCTGGTTGTTGTGCAGGCAGGGC
AGGGGTTAGTCGCTGATGAGGATAGTACCTCGTAGCCACATTTGCAGGGCTTGAGTTGCT
GGTCAGTGATGTCCATCTCCTCGGCGCAGAGCGGGCAGGTGCGGTCTCCGTCATCGCTCA
TCGTCATCCTGCGGTTCCAGCAAGGGGAGAACCCACAGAAACGTCAAATTTAAAAGAGGA
CCAAAACGAAATCCATATAGGGACAACCCCATAGCTACGGGAAGCCCGAGATCTCAAATA
TCCGAAGGTCAATCTGCGGGATTCTAACAAATCGGCCACCCAATCTATCCGCAAAGGCGT
CTAGGGTCCGAAATTCCAAGCTGGATTGCATCGGATGGCGCATCAAATTAATAATAAACG
CACGGGTGCGGCCTAAATTTCCGATCGGATTGAACCAAATCTGCTCGGATGATTACGGAG
GAACCGCGGGGGCGGAGGAATCAGGCGAACTCACATTGGAGGTGGATCCGATTGGGCGGC
GCGAGAGGCGAAACCCTAGAGGGGATTGACTGGTCGAGGTCTGGTGGCGTGGGCGGGGGC
GGGGGCTCTCTCTGATCGAATCAAGCGAACGAGGGAGAGGGGGCGGAGGAGGGAGGGGGG
ATTGGTGGTGGGCGATGGGTGGTGGATTGGGAGCGAAAAGGTTGGACTTTCGGTGGAGAA
AGAGGGAAGTTGAGTCGATGTGTGTGTATGTATGTATGTATGTATGTGCTGCGCCGGGCT
TGTGCTGGGGAGGGGAAGGGAAGGGAAGGGAAGACGAAGGAAGGCAAGGAAGGAGATGGC
GACGCAAAGAAAGCATAGGGTAGGGCGGAGAAGGGATTGCCGCACCGCGCACCACCACTC
GCTCCCTGGATCGCCTCCTCCTGTGCCCTACCATGTGCCCGCTTCCTTGCCTTGTTTAGG
CCTTCCTTTCATTCTCATTCCCATGATTCAATCCAAGACATAAAAATAGAAAGCACCATA
AAAACGTCCCATGAGATATGTATATGTAAAAGAATTACTAGATGTTTTGTACTTTTATTA
ACAAAAACAGATGAAAATAAGGCATTGGCGGGTAATCGCCTAGTCTGTTGTCTTCAACCG
ATTTCATGTTAATGGTTTTCGGACTCCCGTGTTTCCTTTTTCTTTTATTCCTCGCCGTTG
GGTGATTGGTTATATCAAGTTTTTTCTTGGTCGATTAATTGGCGATCTCGCTACAAGGTC
GGGGGCCAGCGAATATTGGTAGCGTTGATGCTATGAAATTGTTATATTTATATTTATCTT
CCTTTCGTTTCAGCAACTTCGGCCCTTTTCAACAGCTCCCTGCTCCGCAGCTTCGCTCCT
GGAGCGGCCAGAGCGGAGCGGTCTGCAACCTATTTTTGTAGAGTCGTGAAAACGGCGTTC
CATCCGCTCCCGTATTTTACGGAGCTAGATGGTTGCCGAACAGGGTCTTCTTCTTTGAAC
CTTGTGTGTGTCGCTGCTCTCGTAGTCGCTAGCCACCAGCAAGAGAATGGGATTGATGGT
CATTCAAGATATGGAATCCATTAACATTTTCTTCCTCGTGGACTTTTCTTTCCCTCTGCC
TCCGGCTTCTTCTCTACAACTTATGCATATTGGATTTGATAGCTTTTCTAGAACTAAAAC
ATATATAATTTTACTTTCTCATAAATGTTAGATTTTTATATAAAGTTTTGTACATTTGAA
TTCTAACATACTATTTTACAAAGATGTAAAAAATAAAGAAAAATATTTTTTAGTTTTCAG
CAAGGATGGAGCAAAATGGACCAAAGAAAAACCTTAGACGGCTTGGTCGTGCACCAAGGG
TGTGTGTGACTCCCATGGCCACCGCCTCTCGCACCTCTTCGTTCTCATGGTTTATGTACC
CAGTTAAGTCCAAATTTGGGATGGTTTTACCTTTGTTTTGTGCCTACATAGTATACTTTG
CCAGATTTTATCGCGTGCACGCACTTTTTTCATATGTTTTCATCGGGATGTCGTTTTCGG
GTGTGTTTGAAAGTTTAAGAAAAGAATGTCAAGAAAGGGTGATGAAACCACACCAATTAA
TGTGATAAATTATCATCATAAAGCATTGGGGAGGAAACCTGAGCTACGAGGGAGCAAATA
GAGCGCTTAATGACACGTGGTACGAGCGCACGTGCTCGTACCGCCCCTCGTACCACGTGT
CATCCCCGCCATCTGGGCAACTACTTTAACCTCGTGTGATTGGATCAAGGATCAAACGAC
TGATACGTCTTCATCGTATCTACTTTTCCGAACTTTTTTGTCCTTGTTTTGGACTCTAAT
TTGCACGATTTGTATGGAACTAACCCGGACTAACGTTGTTTTCAACAGAATTGTCATGGT
GTTGCTTTTGTGCAGAAAT