morexGenes - Barley RNA-seq Database

Contig contig_40328
Source Contig contig_40328
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_40328 (8688 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_40328

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_55853	2	2602 bp	MLOC_55853.1	Available	Available	LOC_Os08g29200.1, FRAME:+3, EVALUE:0.0, 13108.m03016 protein BURP domain containing protein, expressed
CDS Structure of MLOC_55853

Contig Sequence (8688 bp)

>contig_40328 8688 assembly3_WGSMorex_rbca.fasta
TTGAGTTTGATCGTACGCATTTGCTTGTATGATTAGCGTACGATTAAATCGAGGCTGTCA
CACTCGCCCTCCTCCAACAGACGCCAGCTCGAGTGGGGTAGCGGAGTTCGAGAGGGAGAA
GGAAAACCAGATCTGAGAATGCCTCTCTCTCCCCTTCCAAATAATCCTTTTATACACTAG
GCAGGAGATCTCCAGCCGTCAATCAACATTCAATGGGAGATCCATAAGATCCCTTGGACA
GCGCACCTGTTGCACGTTGCGAAATTCCATGCACAGAAATCGAGGAAATGCGCCACTTTC
CCCAGTTCCCAAGATGCCGCCATTTCTGCTCTCGCATGCGCACCCACGATTCGAAATCCG
CAAAAACTGTGTCGCGTTTCGTCCCGTTTGAATCCTGCGCCCTCTTTCCAAAAACAAGAT
GAGTTGGCCCACCGAACCCTGTGTCCCTCGGAAGGACTCTAGTCTCTCATATATGTGGAG
AAGTGGTCATGAAAACCTTGCCGGGGTGCGAGTGGGATCTGTCCTAAATCTCACCTAATC
ACTCGGAGCCCGTGGCTAACGCACACCCAAGCCACCAATCCATCTCCCCGAGAGATAGGC
AAATATCACAGAATGAAGACATCCGGACCAGTCCAATCATTCGGAATGCTTGAGTCCTGA
ATCTGTAGTGTCTTACTTTGGACCCGAGTGGAAGAGCCCCGAGGTGCTTTCCGAGCTTCT
TTGAGCCCCCAGGGACACTCCAAAGTGTCTCTCACTCGACCAGTCAAACCTCAACCGATT
TGATGGCTACTGATGGGGTTACCTACTAAGGATAGGGCCATGGACCTGCTATCCAGGGCC
CACCAAGTGCCCCACACAGTCACTGAAGTCCCAGGGCTACCGATGCAATTTTAGTCTCAC
TCGAATGTATAGAGTCATCCGACAGCCTCCAGTCAGTCGGATGCACACGAGCACAAGGAC
CAAGGAAATGCGTGGACGACGAAGGGACTGCAACGGCCAAGGGACTTAACCTCTCACATG
AAGCACATCGAAGACTTACGTTACCAATAACGCCACAGTTAGAGCTCCTATTACTAGTAA
CTTTCATTGTTAAAGTCATTTAATGCCCTTGTTATGGCATGCCGCGGGCCTAGCGAACTC
TATATAAACTGCCTCGATGCTCCTGAACAAGGGTTAAACACCCCATGTATTCACACACCC
ATAAGAAACAATAAGCCTCTGGGCTCAAGACGTGAGGTCTTTACCACTTAGAGTGGGGCC
TGAACTCGTACATCCGAGTGTAACACTTATATCGTAGCTAGGCTCCGCCCCTTCATTCGT
ACCCCTTATACTATTGTTAAGTTTGTTCCCTCGGTAATGATCGCTGGCATGATGTGGCCG
CGGGCCTTTTTTCCCTTAAAAAATTGTTGTGCACAAACGAAAATGAGTCGCTCCATTGGA
CGCACAATCGATCCATTTGCAACACGCGACGGACACACCGATCCATATGAACAAAAGACG
GACAAATCATACGTTTGTTTGGCTCACGCGGTTTGAGTTGTTCTTTAAGAGCAACTCCAA
CGCGCTGACCCATTTCGTGCGAGCACGTCCGTTTGGGTCGCGACAGACAGAAAATTCGGC
CCAACGCGCCGATCCAAACGGACGCGCGTCCGCTTTTTGTCTGCATGCCGACCCATTTCC
AACCCATTTTTTGCCTGATTTGCGCCGGCACAGACACAAGACGAACGCGCGCGGCGCCCA
GCTACTCCTCCCCCTAGCCCGCTAGTCGGTGGGACGTTGGTCATCCTCTTCCCCCCATAT
CAAAACCAAACCCTCGCCCGCCTCCGTCGCGTCGTCGCCACCACCCATTTATCGGTGTCG
GCACACTTGCCCCCAACGTCGCCACCTCGCCGCCACCATCGTCGCGCCGCCAGAGTTCTC
CAGGCCAGCCACCTGGTCCAAGGGAGGCGCGCGTCTCTTCGTCGGCCATATCCTTCGACG
CCGCGTGCAAGCTGTTCGACAGTTTGCCAATGTACAAAATGGACTCCGCCGACGAGTTCT
TTTTCCACAATTTCCTTTACGACTCCGACGATTTCTCGTCCGATGACGAGGAGGTGATCT
TGGCTGCCGTGCTGATCCATCACCACCTTAATAGCCAACGACTGTTGTTCCATGGCTCGA
TCCCGGGACGCCTTTCAGCGTTGAATCGTAACCGAGAGAGCAGTCATTTCTTTCTTTGAA
AGGACTACTTTGACACAACCAATCCATTGTTCAAACATCAAAAATTCTTGTGGCGTTTCC
GTATGGCTAGGCATGTTTTCAAACGTATTAGGAAAGGGGTGGTCGGATATGATAACTATT
TCAAATGTAAAAAAGACGCCCTTGAAAAGATTGGCTTCTCATCTTATCAGAAATGCACTG
CATCCAACCGGCCACGTCGGTAAATATGGGTTGCGGACATTGAACACACTGTCGATCCAA
ATCTTAAACTGGACGGACGCCGAACAGACAACCGACCAAAACAGACAAAAAAAAACAGAT
AAAAACGTCTTCAGGTTGGATCGACGCGTTGGAGTCGGTCTACCTGCTGCGGACAACCGG
CGTCCGCCGCTGGATCCGCTCTCTGCCGTGATGATGAATGGTGAGACAAGGCAGGTCGGC
GCCTCGTCAGACTGGCTGCAAGCGCCGGCGGAGGCAGGACAACCGCTGTCAGTTAAGTCC
AGGCGGCGGCGTTCGTAGAAAAAAAGAACATGTCCCTCCAGCGGCTCAAGCGAAACTGTT
TGTCACGGACGTCCGTAAGATTGGATTTGGAACAATGGAGTCATGGACTTGTGATCTCAC
GAGACGAGGTCACGGAGGGAGTACTGACTTTCGTCGGCACCTGGCCAGCCTCTGCTAGTC
TGCTTAGCCAAAGCACTCCACCCAGCTAATGGAACCCCGGGGAAATCGACTAATCTCTCT
TCCCCTCCAATCCCCCCACCCCACAGCGTCACTCTCACCCGGGGAAATCCCCCCACCCTC
AGTCCCCTCCCCACTGTCTCCGCCCCCAAATCTCCACCCCCTCCAATGGCTTCTCCTCCC
CGCCCCGTCCTCGCCACGCAGCCGCTCCTCCTCCTCCTGCTGCTGCTGCTCCGCAATGCT
GCCGGTGCCGCGGCCGCGTCGTCCTCGGTGAACCCGTTCACGGCGAAGGCGGCCTTCATC
CGGTACTGGAACCGCAAGGTGCCCAACAATCGCCCCCACCCTGCCTTCTTCGTCTCCAAG
CTCTCCCCGCTGCCCGCCGCGGACGCTGCGTCCTTCCCCTCCTCGCTCCCCGCCATCACC
GCCCGCCTGCCCACACTCTGCTCCAAGGCTGCCCTGCTCTGCCCATCCTCTGATGTGTCG
TCGCTGGCGGACCGGAAGGGCCAGTTCAAGAGCTACAGCAACGCCAACTTCACCAACTAC
GGCTCCGGCGCTGGCGCCGGCACCGACGGGTTCAGCAGCTACTCCCCGGACGTCAACGTC
GCCGGCGACTCGTTCCGCCGCTACGGCCGGGACTCGTCGGCGCGGGCCGACTCCTTCGCC
ACCTACGAGGCCAACGGCAACGTCGTCACCGCCAACTTCACCTCCTACGCCGGTGGCGCC
ACTGGCGGGTCGGGCTCCTTCTCTGCCTACGCCGCGGACACCAACGTCCCGGAATCCCAG
TTCACCAACTACGACGCCGGGGCCAATGGCCGGGCACGCGGGTTCACGTCCTACTCCCAG
GAGGCCAACCACGGGGAGAACAGCTTCGCCGGCTATGGCAAGAGCGGCAACAGCCTGCGG
GAGACCTTCACCTCGTACGGCGGAGACACCAACACCCTCACCTCCGGCTTCGCCAACTAC
GGCGAGTCCGCCAACGGCGCCACCGACACCTTCACGGGATACGGTGTCGAGGCGAACGTA
CCCAAGAACACGTTCCGGAGCTACGGTGCCGGCGGCAATGCCGGAGTGGACACGTTCAAG
GGGTACCGCGGTGACGCCAATGTCGGGGACGACAGCTTCGCCTCCTACGCCAAGGGTGCC
AACGGCGGGGCCGCCGAGTTCCAGAGCTACGGTGGCTCCGCCAACCAGGGGAGCGTCGCC
TTCAAAGGCTACGGCGAAGGCACCAACCGCAACCACCACATCGGGTTCAAGCAGTACGCC
AGAGACAACACCACATTCAAGGGGTACGCCAAGACGGGTGTCGACTTCAAGGAGTATCAC
AACACATCGGCCACAGTGTCGCCGGAGGAAACCACATCCGAGCATCGGCATATGAAGTGG
TCTCCAGAGCCAGGCAAGTTCTTCAGGGAGAGGGAGCTGGTGGCCGGGAACCGAATGCCC
ATGCCGGACATCAGGGACAAGATGCCACCCAGGGCATTCCTGCCGAGAGACATTGCCCGG
AAGATACCATTCGAGCCGAACGCCGTGTCAGAGGTCTTCAGGGTGCCTCTGGACACGGCG
ATGGGCAAGGCGGTGGCATCCACGGTAGCCGAGTGCGAGCGCGTGCCCAGCCGGGGCGAG
ACCAAGAGGTGCGCGACCTCAGCGGAAGACATTGTCGACTTTGCTGTCGAGATGCTAGGC
AGTGACATTGTTGTGCACAGCACGGCCTCCACGGCGGGCAGCGGCGCGGACATCAGGCTG
GGCAATGTCACCGGAGTCCACGGTGGCAAGGTGACACGGCCCGTGTCATGTCACCAGAGC
CTGTTCCCGTACCTGGTGTACTACTGCCACTCAGTGCCCAAGGCCCGGGTGTACGAGGCC
GAGATCACCGCCGCCGACTCGGGTCAGAAGATCAATCACGGGGTGGCCATCTGTCACCTT
GACACTTCTGACTGGAGCCCGGCTCATGGAGCGTTCGTCGCCCTTGGTGGTAAACCCGGC
AAAATAGAGGTTTGCCATTGGATCTTTGAGGGCGACATGACATGGACAGTCGCAGATTGA
TGCTGCCATGGCAACTGCTTAATCTTTCTCTTGTCAAACTAAGACAAGTACTTTTACCAA
GTTCCATCTCTTCTTCTTTTGCAACCTTAATGGTTTATTAAGAATTGTTCAATCTGTGTG
GTAGAGAAAGGGGGTTGGTTCATCATCAAATGTAAACTGTAAATCCTGGAAATCTGGTTG
AGCTGAGGGTAGTTTGATTTTCTTGATCAAATTGCCTTTGTTGTGGTAAAAGAAAGGAGT
TCTACAAAACCTATATCAAATTCCTGCTTGACAAAGTTGTGTACCTTTTTCTTTTGAAAA
GGGACAAAGTTGTGTACTAGTAATGCATTCTGTCATTTTCCTAGTATGTAGCACACTGGG
TGTCAAATAGTTTAATTCACGATCTAAAAATGGGGTAAGTATCAAGGTTCAGCATGTAAC
TTGAGCCACATGATATGGATTTGGATGGTCTTCTGTATGTAGCATCCTCCAGTTTTCCAT
TGTCTACAAAGAACATAAGTGGTGAAAATACAAGTGATGTTTGGAATTGTATTCTTGGTG
CGATCAACATGGCTAAAAAGGCAGCTTTCAATAACCCCACAATGATCATGCGTTGCATGC
CACTTCTTTGGGAATCCTGAGAAAATGACCCTCTTTGATTTTCAATCCTCATGCTCACTG
CACTGTTTCTAATCAAGTAATCTGCTATCTGTTTGTGGCACGTGACACAAATTAGAACAA
AAGATAAGATCACTCTAACAATACGCCATATCATGATAAGAGCATCTCTCTAGCAGAACC
CTTAAAAATGATCAAAACCCATATAATTTTTGCATTTTAAAATTTTGATCAAAAAAGTGT
CCTGAACAGATGCTGTAAAAGTGATCCAATCCGTAATTTTTTTAAAGGGCACGAAAAAAC
TACACCCGAGATCCTTATATTTAAAGGTTGGAAGGCCGAACTGAGGGTGTCCCGTATAAC
GGTCAAACTTCGTCAGAGCAAACACGTCGCCACGGAATTTACCATAATCCGTGTGAAACT
CGCGGGAATTCATCACCTCACACTGAAAAATACCGCTAGATGCCGAAATCGACCGCCGCC
GGTTCGAATTGGACGAGCTCGACCTCTTCGTGGCCTCCAATGACCTCAGCCTGGCCGTCG
GAATCCTCCCGACGCAGCCGGCAAAGGGGCACGGCAAGGCCGGCAACACAGCAGAGTGCA
ACCGGTGGGGAACGGGGCGTGGCTGGCGGGCCTGGGCGCGGCCGACGGGGACGAGGCGAG
GCCGACATGAACGGGGTGTGGCGACGGGGCGCGACCAGTGGGCGATGGGGCATGTCCGTC
GGGGCTGGGCGCGTTCGTCGTGGTCGGCTAGGGGAAGGGACGTCGCCAACTGGGCTGGAG
GAAGGAGCTCTTCTGTGTATCGTTTTCCTAGTATGTGTTCGGCTGTCGGCCGGGGCCGGG
TGAAGTGGTCCAGTCGTGCCAAACCACCGCGCAAACGCCGCACCTGGTCGTGATGTGACT
CCACCCTCGCCCCTCGAGGATGCGGTGCGTAGGGTGGCGAGTCCCCCAGCACCTCCCGCA
GGAAGCTCTGCGGGTGAAGACATGTCGACGGGCCCCTCGAGGGTGCCCTCCTTCACGGCG
AGTGTTGGGCCAGAGGGAACGGAGCCGAGAGCGGACGGCTCGAGGAGCCAACTGCCCCAG
AGGGTGCTCCGAGCCCTCCGTGCGTGACACGCAACCTTGATGGGACGGGGCGAGCATCAA
CTGGCTCTCAGCCCCCGACAGGCAGCGCTAGAGCCTCCGGGGCCCCGTTGGTGGATGAAG
ACGCTGGGCCCGAGCCGGACTGGGCCCTGGCACTTGTGGCCCCCGGACCTTGATTCGTCA
CGACCTCCCGCGGGACGCCCTGAGCACGCTGGGGCGGCTCGGGGCAGAGCTTCGGGACGC
TGATGCACGCTTGACCGAGGAGCGCCTGCGCTTGGCTCGTGGGTGGCATCAGCTTGACGT
GGCCGTCATGCTGAGTCGCTGCCAACACGAGGCGGCGCACACGAAGGTCTAAGTATCCGC
TGCCGCGGCGAAGGAGGCGCGCGAGTGCACTCTCCGCGAAACCGAAGAAGCGATTGAGCA
TTGCGAGGCTGCAGAGGCCCGTGAGCGGGAGATTCACACTTCAAACACCGCTTTGGAGTA
GCGGCTTCAGGGGCGGAGGCTCGAGGCAGAGGGAGCGCACGAGCTCGCCCTCCGCGAGGC
AGATCTTCGGGGTCCTCAAATAGCATCTTGCCTTGATATCGTCGGAGCTGGACTTGGAGC
GCGAGCGGCTGGAGGCGCTGGATCAAGACGTTACCGTCACCGAGGCCACCCTTGTGGGAG
GCCGAGACGAAGCTGTGCTCCAGTCCCAGGTCGCCGTCGCGGCCGAACTGGCGCCACTTG
AGGGACAAGTGGGTGGTGCCGCTTCCCTCGTGGAGCGCGCGACTAACGAGGCGAAGTAGG
CCCGGGAGCTGCAGCACCTACGCTCGAAGATGTTCCAAGGCCTCGAGCGGCGGGCACGCC
GAGCCCTGGGTTCCATCTATGCAGGGAGCGTCTCTAGCCCTCTTGTGCCCGACGACGCTA
GTTACCTTGACTTTTTCACCAAGGTCGTGGAACAGCTTGAGGAGGGCTCCCAATAGGTGG
GCACCTTGATCGAGGAGGAAAACCGCGATCTCTTGTCTCAGGCGCTGACATGCTTCTTCA
GCAAGCTCCTCCACGTTGATCCCCACTTTAACTTCGAGACCGCAATGGCCCCCGTTCCTG
GGGAGACCCACAAAACCCTAGGTAGGGCGGCGAGAGACCACATCGATTCGCTGAGCGTGC
AATTTTCCCCTCACAACCTCAAGGGCCAAGATGGTGTCGAGGGACATGCGATCGACGATG
GCGGCGATTGAGCCAAAGCACACGGCGACGTCGGTGGCGATGAGAGCGACGCGTCCCTCT
AGCCTTCCCCGGCCCCATGTCCATGCCAGCTTGTAGTCCCGCTGAGGCGTGAAGCCAGCA
GATTTAGTTTCGAACTCCGTGCTCCCGTCATGAATACTTTTGTTTTTGTGTGGCTTCCTT
TGGTGCTATCCCATACCTTGTATTATCTGAATGTAGCTCGTATGCGGGGCTTGGCCGTCG
TCTGGAATCTAGGATGCGATCGTGTGGGTAGGTCCAAGCGGCGAGGATGCCCGGAGCAGA
CCGGGGGCCTTCGGAGACGGTATGCCCGATAAGCCGTCCTTTATCGAATGTCGCGCTTTC
CCATGCATGGAGCGCTATGCCTTGGGGGCACGAATCATGCTCGTCAGCTCGCTCTTGCGC
TTCGTACGAGGGAATTAGGCATTAGAGGCCTTCGGTGAGGTGGTGCGGGGGGGGGGGGAC
AGACCCCTGGACAAAGCGTGTATCTTGGGCATGGGCACCGTACCCCAGCCCCCACTCGTG
TGACATTCAAGAGGGAGATGCCATGCACGCGTGGTGAGAAAAGAGAAAACCAAAAAAACT
CCGTGAAAACCAGAAGACCGAGATCTTTATTAAAACCAGAGATGAACTTGTTTACAAGCC
CGAAAAGGGGAGGTGTGGTTGCCGTGTCCAGCACGGGTCAGCCTTGTGAGCTTGCTTACA
AGTCAAAAAGGAAAGGAAGAAAAGCGGCTCCCATATCTAGCACGGGTCAACCTAGAAATA
AATACGGTTTCCATATCCAGCACGAGTTAGCCTAAAAGAAGTGCAGCTGTCGTGTCTAGC
ACGGGTCAGCCTAGGTTAGTTATGGCCCGTGGGACGTCTTCTTCGATC