Map Locations of contig_40308 (8630 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_40308

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_55834 1 1540 bp AK368060 Available Available None





CDS Structure of MLOC_55834






Contig Sequence (8630 bp)

>contig_40308 8630 assembly3_WGSMorex_rbca.fasta
TTATTCAAACATGTATTACTGTTTCATGTTAATANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCATATTTCC
AACAATGACATGTTTGAGACTCCTCGCGCACTCAGGACTACTCCAATGTTGCATCCTAGA
TCTTCTTCAACATATCAATTATTTCTCGAACCTGACTATGTTCTTGTTTGTGAAACTCAA
GCTACTTCTATATTCGAAGCTAAAGCCTAGGACTCTGAAGGAAAATCAGCTAGCTCTACC
CCTGAAGTCAAAGGTGGAAGCCTAGGACGAGTAGATCTTGTGTATCTTGTTCCTTTTTGT
CACTTGTTGAAATGATGTTTTGTTGACCAATTTCAGTTTGGTGGCCGTAAAACTTTAAAG
TATCTCATGTGGTACTATTGAACAACTCTCGTTGTAGTGTCAATAACCCCCTGCAATGTT
ATCTATTAGTATGTGGTTCTCTGAAAGTTTCAATTCTTTCACGAGAAACTCTTTCAGAAA
TTATTTTAAAAATATGTATGAACTATTGTAACAATATCATGTCAAAATATCTATGAAAAA
TCATTTGAAAGCCTTCTTTGATAGGAATTACTTTCATCCAAAATTCACTCACTTCATTGA
TGTGATATTACTTAGATACATTCACTATTAATGCAACTCATTATACCAAACAAAAATACC
CCTCCTTCGTACTAATTACAACCCATACATGATGTTAGTAAACCAAATTCTTTAGTACAT
GCATACATTTAGGGGGAGCTATAGTTTATCTTTGATTGATTCTGATTTGCTTATCTCGCT
TTATTAGTTACCTCAATCTACTCTATGATGTTTCTGTTTGGTCCACAATCATCCAGGGAG
AGACTGTTGGTGTAATATCTTGCCCTCTTGTGTTTTGGAGATTGTTATGGGAACCAGTAT
GGGACTGATTTGTTTGTTAGTGCACACAAAGAGAAGCAATCCATGACGTGTTGAGAAGAA
TGCTACATTCTGACGAGAAGTTTGAAGAACTTCACCAAAACTATGTGCATTGCAGAGAAG
AGGGAGTTATGTTTCGAGAAGAGACAACACCAAGAATATAGCGTGAAGATGTTTACCCCT
TAAAATATTGCTCACACAAATCAATTTTCATTCGGCATGTTCGAAGAAGAATGACTGCAA
CCGAGAAGTTTGAAGGTGAAGCAAAGACGTAGTATTTGTCTCATTGTTCTTCTTTCTCTC
ATTTGATTCACAAGACCATCATACTATTAAGAGGGGTATATGTATTTGAGGCTTAGGTGT
GTTTTTATTCTTAGCCGAAACCAATGAAAGACTGAGAGAAATTTCCTTGTGATCTAGAAT
TTTATTCGCCACTCACAGAACTTGTTCTTCTGGACCATGAGAGATATCTTTTGGACCGAG
GAGTCGACTTACTTGTTTTTCAAGTAAACTTTCGATGCTCTCAAAATACGATCGTTGAGA
ACGTGTTGTTTGGCCATTGGCTCGACCACGTGTCCAAAATAGTCATGTCCCATCAAGGAA
GGCTGTGATTATAAATAGCCACCCAGTCAAATGTTTTTCTTCCCTGCTTAAGATTCTGAG
AAGATTGATTGAGCCCCCTCTCAAGAGATTTGAGTTTAAGATCAATTGAGAGAAAATCAA
GAGCCAAAACTTAGATAGTGGTTGAGTATCACAGTATATTTGAGTCAAGAGTTATTGTAC
GTGTAACTCTTGAGAGTTGCACACTGTCTAGATGGACATTTTTAGATTTGAGTTTTGAAG
AGTAAATGTGTTCACCAACCAAAAGTAATTATGGTTGGCGTATGTCGAGGGTTTGGAGAT
CCCTGATAAGCATCTATCCATGTGAATTTAACCGAAGTTTGATAGGACGGGGAGATGTTT
GCTCCCGTGTCCAATCACAAGCCCCCCTAATCAGACATAACTTTTGTAGAAGAGTGAACT
TTTCTACCAAATCTTCTATTGCCATCAAGCACCAATTCACTCTACTCTATTGCAATACTT
TCAGTAGTTTATCTTCAGTGATATGTGTTTTGATAGATATCTGTGATCATTTATCTGTAT
CTTTTTCTCATTTGTTGCAAGACTATACTGTTTAGTGTATTCAATTCGTCATGCTCAAAG
TGGTTTCATTGTATGCTTCTTTGTTAAAAAAAAAATGAAACTCCATGGGCACTAGCACCC
ATGGTTTTATTGATATAGAAGAAGCATCCCTCATGAGAAACCAGAAATTCGTCCCCGACG
TGGATCGAACCCTGGTTGCTGGAGACGCTTCTTTGTTGGTCATTTGGTATTTCTTTGTCA
TTCACGCGAGTTATGATCCAATCAGTGTTTCTAAGTAGAGTAGCCCGTTAAGTGTGATTT
GGATTGTTCGTATTGTTACTCAATGTTGTTACGCTTGATTCCTTTCTGTGCTACCATAGT
GATTGTGAAACTACTCGGTTACTATACTCGTAGAACTATTGTTGCTTTTGTTGAAAGTTA
TGCATAATTTGTCTTGTGTAGCTAGTTTATTTTTGTGTATTGGTGCTCATTTTGCTTTAG
TGATCCTAAAGTGCTTTATCTTCCGTTGTATTGTATCAAATAGATTTGAGGTTTCGAAAG
AAATTTTAAATCTCCTATTCACCCCCTCTCGTCGATATATTCTCGATCATACACATTTGT
TGCGATTGGCTAGGTCAAGAACTACTAAACCTCCTTTATCTTTCGGCTCATATACTTTGT
CCCATGCAATGAGGGTTGTACCTCTATCTTCTATTCCATATATTTCTCCGAAAAAACATG
TTCTATGTTCTTGTTTATCTCTTAAATTTCCCCAACTAGCAGGTCGAGAGTGCAAATATA
GAAGATTGGCAAACTATAGAAGACATACTTGAACATGACCATTTATCTCCATAAGAGAGC
AGGGTTGAGCAACCAGCTAGCCTCCTCTCAATTATTTGCATAACAGGAACAGATGCGTCA
ATTCTGGGCTTGTATAAGTATAAAGGTAACCCCATATAAGTGAAGGGGCACCTCCAAATT
TTGCAACCGAGTGATAACGAGTTTTTGCATCTTACTCTTTGATAAGTTAATGGGGACTGA
TACATCTTAATATGTATTTTTTTTATTTCATGCTATGTTTATATCATTTTTTCATCGTTT
TTATTGTTCTTCTGGACTAACAAATTAACTTAGTGTTGAATGCCAATTGATGTTTTTTAC
ATATTCCTGAACTTCTGGGAAAATCAATTTTACACAGCTCCAAAAATCCCCCAAAAACAA
CTTTTGAACCTTTTGTCTGTTTCATTTTGTTTTAGTTCGCTTCGTACGTGTATTAGGCAT
AGTTCATTTCTTTTATAACAAAGAATAATATTATCGATTTTCGTTTGCTATCATCGTGTT
TTAGATTTCATGTTAACGTTCATTTTGTGTCCATGTACTACCTTGTTTTTGCATTTTTAT
GACTAGCAAAACAGGACGTGCGTTGCAACGGGAGAAAAAAAATCATAATCTTCAAAGACC
ATGACCATATTTTATTGCATCACCGAGATACACTATCATTTTTATTTTTCATGAGATTGT
GGACGAGTTTTAAAAATCATGAGCATTTTTTGAACTCGTGGACATACCTGAAATCGTAAA
CATTTTTCAAATTCGTGAACATATTTACATATTTTTGAACATTTTCTAAAATCATGCAAG
TTTTTAAATTATGAACATTTTGTACTATTTGCAAACATATTAAAAAATGAAGATATTTAT
AAACATTTTTCTTGAATAGATGAATATTTCTAGAATAGAAAAATAATTTTTGAAAATTGG
TGGAACAATTGTTGAATTCAGTAATATTGTTTTGATCTAAAGAATATTTTTTTAATTGCA
TGATCAATATTGAATCAGAGAAACATTACATGAATCAATAAATTATATTGTACGGCACGA
ACAGTTTTTGAATTTATAGGATATTTTGCAAATCATAAACATTGTTTGAAGTAGCAAAAT
TTTATTCAATTTCATTATACTATATTTTTATAAAAATCATGAACACTTTTTTATTTCTCA
AAAAAACAATTAAAAATTACGAACATTTTTTGAATAGGCAAATATTTTTAAGAACCACAA
ACATTTTATAATCGATTAATATTTTTCAGAAATCAATTTTTTTTCAAGTTTCAAAATATT
TCAAATAGAAAAATGAAGACGTAAAAGGAAAACGAAAAATGACAAACAAAACTAAAAAAC
AGTCCTTGCAGACATGGGCCGGCCTAAACAGGCACGATGTGTCTTCTCCCTACACGAAGA
GCGCATTATAGAAGGTTTCTACTGCATGGCCCGGCCAAGTAGAGATTTTCCTGTGTGAAA
TATTTTTTACCACTTACGAACAAAACAATAGCCTATTTATTATTATACTAGCAAAAAGGT
CCGTCTGTTGCAACGGGAGAAAAAATACCACACGCTCTTAATTTATGAATAATGTCTATA
ATTTGAGAATTTATAGCTACTGCCCAAACAAAGCTGGTCTTAACCTACAAAAGCGTAGAT
TCCAGAGGTCTTCTATTTCAACATGATTTGTATGTAGATTTAATACGTACAAAGAAACGG
ACAAGTGATCTACAATCCTGATTTTGTTGAGGTGTTCATCCCAATCCGGATCAGTACCGG
TATGAAAGAAAAAGGAATAATGCATTATTGATTAAGATTGCATCCTATATACTATTTTTA
AATAATTAGTAGGTAAAATAACATCATATTCAGATTCTACATATTTTTCTAATTAAAATT
CATATATGACATGTTAAATTTAAAGTTAAGGTTTAAAAGATATGAGTATTTTAAAAAACA
TTTGATATGTACTGCGAGTTTACTGTGAAAAACATCAGAGTTTTTTTTTATAAAATAGCA
TAACAGACTAAGAATACCTATTTCCTTTATTAGTACTTATAGATTAGGTAGGTATAAATA
TAAATATATATTTTTTTATAAAGAAATTATGTTAATATCACGAAGATACCAATTACACCC
GGTCTCTGAACCAATAAGATATCCAAAGACATCAGGGATGCACACAACAAAGAACAAAAT
AAACAAGAGAGAAAATAAAAACAAAGACCCTATCACGGTGTACAACACCTTGCAACAGAA
GCACTCTAACCATCACCAAATACAACACCAGTACTACAACCTAGGCTCGCCAAAAGCAAC
GCCTCCAAGAAGGAAACAATGCACGAGCGTTGTCGTCGCCCGATCGAAGATCTTTGGTTT
TCACTCCGGATAAAGACCTAGTTTTCAAAACAATGCCTTCAACAAGGCTATTGCCAGGTA
CAACCAATGAAGGCCAGACCTTGGGGTTTCACCCTGGAAATCAAGGCTCAGTACTCGACG
AGAACCACCAAAGATGCAGTCCACCTGTGTTGCCACCCACGCTTGCCCAGGCGGCTGCTG
CGAGTCGCCGCATACCAGACACACAGGGAGAACATGTGTTGCGTTGTCTTCAACACAACC
AACCAACCGCTGATCGCAGCCACCGTGACTTTCTCCAACTCTGTCACATTCATAGAAATC
TATGTCCCATATCACCAAACAATAGACGAAGCTTCACATCGCGCCCCGGAAGGATGCGCA
CGACCGCATCGATTCTTCTCTAGATCTTCAGTAGCATCATGTGTCAGACTGCAGAGATCA
CCGAAAAGAAGACTGGAACTCGTCAACGGCCAGATCGAGGTGGTAGACATGAAGCCGTGT
CGAAACTCCGCAGGGCCGGACCCCCTATAATCGAAACCTAGCCAACACGCCCCACGCTAC
CGGCCGGTCGTCCCGTCGGAAGAGGCTGGTAAAATGAAGGTGACCCTGTCTGCCACGCCC
GCAAGCGCCGCAACGAGCCACGCTGCGGCGGAGAGGAGCACCAGACGGCCACACGGGCGT
TGCAGCCGCGGCCCAGCCGGACCCAGACCACCGCCAGCCGTACCACCGCCCCCGATCCGC
CGTTCCACCATCGCAAGAACCCGCCGCCTCGCCGGATCGGACGCCGTGCCAAACTATGCG
CAACCCATCAGCTCGTCCTGTCCGCGCGAAGAAGAAGAAAAGAGGTGTGCCGTCCTCGCC
CTCACCGTCTTCGACGGCCAGGGTGCCCGTGCCACCACCGGCAGCGGCGACGGCGACCAG
AGATGCCTGGTGGTTAGGGTTTTTCGATGGAGGCGTGGTCGCCCCAAAGCTGCACGCCTG
TGCGGATAACGTTTATAGTGTTTCAATGAATTTCATGATGTGCACAATAATGTTTATTTT
TGGATTGAATTATAATGATCCATTTTAGTGTGTCTGTCACCTTAATTTTACCCTATCCCG
ATGTGTACCTCAACGTTTTCGTTGTTGTTGTGTTTTTTGCGTGAAAACATTTTCATTGTT
TTTGAGTGGACATTAGACCAATTTTGTTGGGCCCTGCCGTGTTTTGGTGCGCACATTTCA
GGTAAGTTTCATTACGTTTTTTACTTCATCCGTTTTTAAATATAATATTTTTTAGAGGTT
TCATTATAGACTACATCCAGAACAAACTGAGTGAATATATATTTTAAAATATGTCTATAT
ACAACCATATGTAATCCATATTGAAATCTCTAATGGGTCTTATATTTAGGAACGGAAGGA
GTAGTACGGAGTATACTAGAATAATTCAGAGTTACCAAACAAGACATATTCGATATTGGG
ATTGTATATCCGAGGTACTTCCTAAATATAAGTCTTTTTAGAAGTTTCATTAAAAAACTA
CATACGCATGTACTCCCTCCGTTCTTAAATNNNNNTCTTTTAAGAGATTTCACTAGAGGT
CTACATACGAAGCAAAATGAATGAATCTATACTCTAAACTATGACTATATACATCCGTAT
GTAGTCTACTATTAAAATCTCTTAAAAGACTTATATTCAGGAACGAAGGGAGTTTATAGA
CATACTTTAAAGCGTAGGTTCACTCATTTTGCTATGTACGTAGTCATCTATTGAAATCTG
TAAAAAAGATTTATATTTAGGAGTGGAGGAAGCAGAAATCGAAAGTGGACGGCAGATGCA
TGGACGCTATCTACTCATTTGGGCCTAGAAGAGGAGAGGTGCCGTATGATTCTTGAAACA
AAACTCATGTTTCCAGTGAGATTGTCGCAATTCCAAACGGACCTTGCTTGCTTATTCTAT
GGCAGTGACTGTTGTGGACAGCTGCTCTCCGTTTTGTACTGTACAGCGGAAGCGAACTTG
TGTATCGCACCAAGTGGCCGATGGTTGGTGCCATCATCTTTGATTTCTAGTTCCACGCAC
ATACTCGTATATGATATATCGTGCAGGCACTCGTTCAAGCTTGTGGTGCTACTGCGGCAG
TGGCGCCGGCCTCGATGTCCTTGCTGCAGCTGCTGCCGGAGAGGCTGTCGTCGTCCTTGC
CACTCTCCTGCAGCTCCATGATAGGCTTCATCTTGCGGTCCGTGATGGCGATGGCGATGT
CGTTGGGGAAAAGGTTGTGGAACACCAAGGCGTGCACCATGGTGGTGGCGAAGAGGCCCG
TCACGGTGAGCGTGGCCAGCAGCGACAGCCCTAGGCACAGCGCCTTGGTGAAGGCGTTGT
CCACCACGGTGGCGTACCGGATGGATGCGATGGAGGCGCCGGTCATCGGGAACGTGTAGG
CCCACCACGACAGCGAGAACCTGAACCCTCTGAAGAAGTTGATCCGGACGGCGAGCGACG
CGTAGAGGAACATGGCGATGAAGTAAGCGAGCTTGGCCCCGACGCCGAACTCGTCCACGA
TCTTGGCCCACGCCATGGACGCCACGCTCGGCGCCGCCACGAAGAGGAAGAAGACCGGGT
GCAGGTCCTTGGGCAGCGTCGCGTTGGTGGGCAGCCTCTGGTACAGCGTCACGAACAGCA
CGGTGTAGTGCGCCATCCCGACGCCAAAGAAGAAGATGGGACCTTCCTTGAGCCCCATGG
ACGCGCCCATCAGCGCTCCAACGAAGTTGCCCACCACGGACAGGTGGTTGGACGGGTTGG
CCACCTTGGACAGCCGCCTCTGCCCACCAGACATCCATTGCCCGTAGATCTTGAGCTCCA
GGCACAGCACCGGAGACATGAGCGCGTACCATAGCCAGGCAGGCAGCTGGGTGGTGACCG
AGGGGGGCACACCCATGGCCAGGAACAGGCATGCGATCCACGGCGCGAAGAAGAAGTTGA
CACGGATGGGGTGGTAGTACTCGCGACGGACCGCCTCGAAGAAGAAGATGATCTTGAATG
CGTAGACGGCCGTGATGATGGACATGAGCACCACGGAGATGTACCAAAGCACCAGGTTCA
CCTTGGGGCTCACGTGCAGGAACTCGGTCGGCGCCGCCGTTGCGATCGTCTTGTACAGGA
TCGCCTGGCTGCTGACCCCGAGGCACATACCGAATGCCGAAATGGGGAATCGGAGCAGGA
ACGGCCACTTCTTGTCCGCCGGCAGCGCCAGCTCCTCGGACGACTGAAGTATTGTTCACA
ATATATACGTAGCTTTTTTATTATGAGGCTCGAAATGTGATGGAGCGATGGAAGAAGAAG
ACGAAGAAGGAAATGTGATAGAGCCATGGAAGAAGAAGAAGAAGAAGAAG