| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location | No map location |
Predicted Genes from contig_40277
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_55804 |
2 |
2138 bp |
MLOC_55804.2 |
Not available |
Available |
LOC_Os03g05440.1, FRAME:-2, EVALUE:1e-114, 13103.m00588 protein DUF677 domain containing protein, putative, expressed |
| MLOC_55802 |
1 |
459 bp |
MLOC_55802.1 |
Not available |
Available |
None |
| MLOC_55803 |
1 |
2113 bp |
MLOC_55803.1 |
Available |
Available |
LOC_Os08g09210.2, FRAME:-3, EVALUE:0.0, 13108.m00966 protein phosphoribosylamine--glycine ligase, putative, expressed |
CDS Structure of MLOC_55804
CDS Structure of MLOC_55802
CDS Structure of MLOC_55803
Contig Sequence (10598 bp)
>contig_40277 10598 assembly3_WGSMorex_rbca.fasta
GGTAGAGCAGATTATGAGATTATAATAATCTGGTCATCTAGTTTATAAAATCTACAATAT
AAATTGTCATGTTGGGAATTACAATAGATTATAAAAACCAGATTANNNNNNNTGGGTGGT
TCCAAACAGGGCCTAAAGTATGTGTTCTACGACAACAAATTCTTGCAGCGATGGCCATGG
GCTTAGACTGCCATGCTCCTGGCCCTGTTGATGGTCATGGAGCAAGAGAAAGGAGGAGGT
GCTCCTCGCACAGCACTTCACATATTTAGTATGCCCAAGTCGATATATAGTTTCTCCTTT
TGGAATAAAAATAGTGACGGCAATGAACCACGATACCCGAATAGCAAATGAGGAGGAGGC
TATGGCTGTTCCCAAATAGACTACTGAATTCCGGGCATTGTCCCTCCTCTGATGTGTCAT
GAGCTCACCACATAATTTCTAGTACTCCCTCCATCACAGTTTGTAGGGCGTCTCTCGCGT
CGCTCTGGTTTTAAAGAGGCGCCCTACAAACTGTGATGGAGGGAGTAGTACTACTTATGA
AGGATTGTCCTATAAGCAAATGCTTATGAAGAGCCTACATGGTTATGTTCACTAGAAAAT
AGTTAGTCGGTGAGATTATTGCACCTCAAGAGACAATTGAACTTGACACGTTGCCCGCCT
TGAGGAAAACACAAGACTGCTACAAATGGTTCGGAGCCAAACCATGGTCAAGGGATGCTC
ATGTTCGACAGGAGGAGCAATGCTCCTGTCAATTCCGCAACCACAACAATGAAGATTCTA
CTGTCTTCATTTCACTTGACGCTGGAAGCTCACCCCAGATTCAGGAAAACCGGACTAATC
AGTAGTTAGCCGTCTGCTCCTGTTTCAGTGCCCTCCAGCCGATATCTCGCCTGAAGAATC
CTTCTGGCCAGTCGACGACATCTACCGCATCGTACGCTCTTGACCTCGCTTCTTCGATGT
CCTTACCCTTTGCAGTGACGCCAAGAACCCGGCCTCCAACAGCTACAAGATTGCCATCTC
CATCCAAAGCTGTTCCAGCATGGAATATCTTGACAGCTGGAGAAACCTGCTCGGCCTTGT
CAATGTTTTTTATTACGGTTCCCTTCTTATAAGAGCCAGGGTATCCTTCGCTCGCCATCA
CAACCACCATCGCGATTTCAGGTGACCAGGTCAGCGAAACCTTGCCCAGTTCCCCTCTGC
ATGCGGATAGCAGGACCTGTGCAAGATCAGACTCCAATCTCATCATCAGAACCTGTGTCA
AAGGAAAGGAATTAATACAGCAATGCAGAGTCAGAATCTGATGGAAAACAAAATGTGACA
GGTCAGCTAGGAAAATTAATAAGGAACATACGAGAAATGTGGTAGGATACTATGTTGTGT
ACTTCAAAAGCATGATAACCTACAATCACATCGGCTATCAAATATTTTATATCAAATATT
TTATAAAATGCCTAGCAAACTAAACAAGGCCATATTGGACTGAACTGTTAGTATAAAGTT
GCATCATTGATTCAAAAGTTCATATAAGCCTTTGAGCAGACAGCTAAAAATTGAAGAACC
CACAAATGTCAACAAAATTGACTGTGCTTCTGGAATTACGTGGAAAAATAGAACAGCATG
AATAGGTGGCACAGATGATTGAAGAAATAAATGGCGTGCTAAAAGAAGAAAGCCTAAGCA
GTGAACAAAAGTAGGTTGTGTTGCTTATGTATCGCAAGTAAATGTACATGAGAACAAGAC
ACAAAAGTTCAGATGGCATTTGTAAGGCACTTACTCTGTTACAGAAGTACATTGTTTTGA
ACATGAGCAAATTCTACAAGATGTACCTCTGAACGCCTATTACTAATGTCATGGACTATT
ACAATATGTTAGCAGAAAAAGACTCGACCTACAAGCTCTGAAGTATGAGGAGAACTTTAT
TAAGGAATCACTAAAGAAAGTATGAAGAGAATTTCATCAGAGCATCACAAAAGTATGAGG
ACAAACACCATTGGGAAGGAGTTCAAAAACATTGCGTTCTATTGTGAAGTTGTGATATTG
TCCAACCTCATCAAGAAACGAACTTGTAATGCTTGAATAGGGAAAATATAAAATCTTAAG
AGGCAGCTGACAGATAATCACTAACCTGGCATTCAGGATCCCCGAATCGCACATTATATT
CAATAAGCTTAGGCAGCCCAGACTTCTTCTCTATCATAAGCCCGGCATATAATACACCAA
CAAACTTGCATCCTTCAGCAGCCATACCTTTAACAGTTGGAATAATTATAGTTTCCATTA
TCACGCTCTTAAGCTCTTCGGTGACTATTGGCGCAGGGGAGTATGCACCCATACCACCCG
TGTTTGGACCAGTATCACCATCACCAACTCTCTTGTGATCCTGTGCTGATTCAAGTGGCA
AAGCATTTTCACCATCTACTAATGCAAAGAAAGAGGCTTCTTCGCCCTCCAGATACTCCT
CAATGACGACCCGCGAACCAGCAGAACCAAATGACTCGTCAACCATCATAGAGTTTATTG
CTTCGAAGGCCTCATCCAAAGTCATAGCAACAACGACACCCTTTCCAGCTGCCAATCCAT
CAGCTTTAACAACAATAGGGGCCCCTTGATCCTTGATGTACTCTTTAGCTTTTGCAGCAT
CTGAGAATGTGTGATACTACATGATAGAGAGAAGTGTACTCGTATTAGCTTCAAATTGTA
TGCCTTAACATCTGAATCTACAATAAGTGTCAACAAACAGGAGTATCAATTTCGCTGTTT
TCTGTTGAAAGTGATTTCAGTCCTTTTCTGCAGTAATAAGATGACTTCATTTCAAAAAGC
AATATGTCTTTAGAGGGATATCAAAACGATGGTTGGAAATAATGCAGCCACACAATGATT
GTCCATCAGAAAGTGACAGTTCATTGCATAGCTTCTGTATGCTTAGTAGTAGCAAATCAG
CACAAAATTAACATGGTTAACAGCATTGCCTCAGGACAAGGAAATATTTATGCCTAAAAC
GATATAACATTTCTCATATGCAGGCATCTCGTGAAAACAAACCCCTCGTGGCCCCTGGAA
GGTATAGTGCGTAACACAAATGTAAACTGAAGTACCTGAGCAGTGGGGATATTGTACTTA
TCACACAACCTCTTCATAAAGTCCTTTGATCCTTCTAATGCTGCAGCCTCGGACGACGGA
CCAAATGTCGGTATCCCAGCTTTGACAAGGTCATTCGCAAGGCCCGCAACGAGAGGGCCT
TCAGGACCCACTACCACCATTCCCACTCCCCTCTTGCGGCAGAACGATATAACAGAATCA
CTGCTGGAAATGTCCAAGTCCGGTATACAGAACGCATCCCTGGATTGAGCAATACCAGCA
TTGCCAGGGGCGCATAAAACTGTCTCGCAAGAAGGCGAACGGGTCAAAGCATAACAGAGT
GCATGCTCCCTTCCTCCACCGCCAATGACGAGTACAGTTATCCTCTCTTCTGAAGAACAG
AGCAGAACCAAAATTAGAACGCCGGTGCTGCACTTTGCATCAAACTGGCTGCCGATATTT
ACTAGGTAAAAAAGAAATGTTTTGGGCAATGCATTTCGTCACACAGCACATTAAAAATTG
AGGTTATATAACATTAAAAAAAAACATCGCTCTTCCAACACTATTGGAGTCGTTGAAGAA
ATCACACCCAACTGATCCAGAAGGTAATTTGCCTACCAGCAACGACGGCCCCGTCCGCCG
GCGAAGCTTTTGGGATTGGGGGCCATCTTTCTGAACTCCGGACAGCCAAATGAGAACGGG
GGTCGACGCGCTGGGCTGCATCAGTGGAGACATTGCTGCTCCATGCCCGAGAAACAGGGC
AAGATAGCGAAGGCTTCCGGCCGCCGCACAGGTGACTACTGGCCAGGCCGTGCCCCGTGG
CAAGCTTGAGATGGCCCCTGATGCTGTAAGCCGCACAAGCCATCGGGGCCGGCCCTGGGA
TAGAGCGAAAAGGGCGCCTGCCCAAGGCCTCGTTTTGAGCTTCGGGAGCTAGTCGGCGGC
GAGCTGGGCAGCGGCGAGACAGTGGGGCGAGGTCGAGCTGGTTGCGGCGATACGGGATGG
AAGGGGGAGGCGGCGGCGTCGATTATCTGGCGTAGGATGGCCGGAGGCGGAGGACGTGGT
CGGGGGCGGGGGGAGAAACGGCGGCTGGAAGGAGGGAGGCGGCTAGGGTTGTCGTCGCGC
AGGAGAGATGGCCGCACCGATTCGAGCGGGTTTGTTCGGTCGGGCATGGGAGTAGTAGCC
AAACGGAGCCGGATCCCCTGACTTGCCTCTCACAAGTCACGCTGCGTCTTACCCACCTCT
AGCTACCATCCATTTAACATCCAACGGACAACACTGGTCAAGGAATATGTCACCTGCCGC
ACACATTATCGGCCTGTTTGAGACTGCTCTGCTTCAGAAAAACCTGCTCCGCTCTATAAA
AAAATCAAGTCAAACGGATAGCTCCATGATATACCGCCCCACAAAGAAATTAAAATCTAG
GATGCAACTCTTTGCTTCAAAAATTCTAGAAGTTCGAGTTTGAAGAAAATTACCCAACGC
CGCCACCAGTAAGTGGATACTCCTTTGTTTTCCCCTTCCCATCCAATCAAATACACCCTT
TCATCAAATTTTCATTTTTGAAGTTGAAGCTAGATGAAAGACAAACATTCTCTCTCAAAA
AGTTACAACTACAGTATGAAACTGCTCTAAAGTTGATTTGGTGAAACGAAATTGATTTTG
ATGGAACGGAGCGATCCCAAACAAACCCTATAAAAGAAGGAAAGGCGTTGCTACGGACCA
GGCACGAGCACAAAGTTAACGATCAGCAAATGATGTTGCACGTGTGTTAGGAAAACGGAG
CGATCCCAAACAAACCCTATAGAAGAGGTTTCTGAATTTTGGGGCAAAGTACCACTAATT
TGGGTATGAAATTCATGTTTTATGTATACGGAGTAATAAATACAACTTCCTCAGTTTCTA
AATATAAGTCTTTCTAGCGATTCTACTACGGACTAAATATAAAATAAAATGAGTGAATCT
ATAATTTAAAGTGTATCGATATATATTCGTATATAGTCTGTAGTGAAAACTCTACAAAAC
TTATATTTAGAAATGAAAAAGGTAAAAACATCTTTAGCAGATCCCATATAACTCTGTCGA
ACTATTTTTGCCGGTCGTTATACGGAACGGTCCAAAAAGAAGGGTCCATGCAGATCCTCG
GCTTTCATTGTCCTTGGCTTCCTATGAAACATTTTCTGATGATAGCTCATGGTTAACAAA
AGCTTCATCATCTTGATATCTTTTGTGTGAAACCCTAGAAAAAGATATTTCCTTCGATCC
ATATTACTTGTCATTTAGATGGGTGTATCTAAATGTAATTCAAAACCAGATATAGCCATT
TCAGCGACAAATAATGTGGATCTGAGGGAGTACATATATACACAATAATGCTTTTCTTCA
GGAAAACAACTGAAAACATAGGTCAAGACTTGATTGGAAAGGCGAAGATAATGGATGAAG
GAAGGGAAATACGAGGATGATAAAGGTATATGTTTGATACAAGTGATATTGAATCTATAA
AACATTTATTATACCCGTTGCAATGCATGGGCATTGTCCTACTATAGCTAAAATAAAACT
GTTACAACTTGTTATACTGGGTTACCGGTAGTTATTTTTGCTTCACAATAAATATTTGTG
TAGTTTTCCCGAAAAAAAAGATTTGCTGTTCCGCAGATGCATGAAAAAAAATCACTAAAC
TAGATTTATTACTTCAAATTCTGCAATATGCAGCGTGTATGTACAACAAGAACCAAAATC
AAAAAACACCAATTGAAATCCTAATTTTTATCTCACTTTTTTCGGGTTTTTTTCTTGCTG
TTTTATGAAGAAATGCTATTATGTACAGTCTGAAGTGTGCCGTGCTGATCTGTGATGAGT
GATCACTGGCCTGCGGCGGTGCCCATGAACTTGATGACCATGCTCCTGGCCTTGTTGATG
GTCATGAAGCAGAGGAAGAGGTGCTCCTCCAGCTCGTCCAGCTGCTGCCTGAAGCTCTCC
TCGTTCTTGCACAGCTGCCTGAGCACCTCCCGCACCAGCCTCCCCTTCCCGGCGCCGGCG
CCGGCGGCGGCCTCCTCGGCCACGCAGAGCTGCAGCAGCGCCAGCATGTACTCCCCCTCG
TCGCGCACCCGCTCCACCAGCCGGCTGATGGTGTCCATGTCCCGGTTGAGGATGTACGTG
CCCTTGGCCGCGGCCTCCAGCTGCACCAGCGCCCGGCGCGCCCCCCGGCCGCTGAAGAGC
CCCATCCACGCCGGCGACATCATCGGGAACGCCGCGAACGCCGCCAGGACGTGCACGCCG
ACGCAGGCGCCGACGACGGCCACGACGGCCACGACCGTCACGAAGGACACCGAGAGCGCC
TGCCTGAGCCGGGCGAGCGTCCTGATCCTGCGGCGCGCGGCCTTCCTGCCGGAGTCGAGG
CCCTTGAGAAGATCCGCGGAGCTGCGCCGCGCGTCCCCGAGCCTGCCCTGCGTGGCCGCC
AGCGCGGTGAAGGGCTTCCCGAGCGCGGCGGAGACGTCGGCGAGGCTCCCGCCGGGGACG
AGCCTGCCGCGGAGCGCGGCCTTGAGCGGGCGGTAGCGGATGCGGATCTGCTCGATGTCC
TTGAGGAGGTGGCTGCAGAGGAAGGAGGCGCCGGCCGTCTCGTCGTAGTAGGCGGAGAGG
AGGGCGTGGACGTCCGGGCGGTTGCGCGCGGACGCGAGCGCCGCGTCGGCGGCGGCCTGG
CCGGGGTCGAGCAGGTGCTCGGCGAAGAGGCGGTAGGAGGAGAGGCGCTTGGACGCGGCG
CCGGAGGAGGAGGCGGGCCTGGGCACGAGGGCGGCGCCGTGGGCGAGCGTGATGTCGAGC
ACCCGCGCCCAGAAGTCGTTGTAGGACTCGGTGCGGAACGCGCTCGTGTACTCCTCCCGG
AAGTCCAGCCCCGGCGAGGACGACGGCACGCTCTGCAGCTGGCTCGTCGTCTTCTTCGGG
TCACGATCGCGAGCTCCTGCATGCCATCACCAAGAAATCAAGAAACGATTAGCGAGCAAG
CATGCGAGATGGATGGAAACCATGCTAGCTAGACACGATCGACCGATGTGCATGCATGCA
ACCACGCGAGAGAAGTGTGCGGCCGGCCGGCTACCTTGGGGGTGACGCCGCCGCATGCAC
GGCCACGGTCCGAAACACTTGAACATGATGCTACCGACGGCCATCGTCTCTGTGTCTGTG
GGTGCCGGCCGGCGAACGAAGAAGCAAGTTGGATTCTTTTTTCGTGGTGATTGGAGATAT
GTGAACGGCCGGCCTATATACGTGTGGCTAACCGGCTGGTTAAGTCGGCAGGCTAGCTAA
TGAACGGGGATAGTGGTGGTGGTAATGATGATTGGGCATGCATGTGTCGAAGCGAGGCGA
CGCCAAAGGCGGCTCGGTTGCTTTGTGGAGATGTCTGCCGTGCTCCGGCACGCATGCACG
CACGCGCCGCCGTACGCTACCGCGGCTTTCGCATGCACCGGCACATACAACATCCAGCCC
GGCCGGCTGGCCCCGATGTAGCTCCCTAGTACTCCTACGTGTGTACTATTGGCTTTGCTG
TCCCCATGCATATAGATATAGGCCGGCATGCATGCCATGCATTCGTGCACCGACCAGATC
AAATGCACCGCGCGCAGCTTGTGACCAAACTAGCAAGTACTCTTTCCACTAGTCCAAGTT
CAAATTTGGTTGGCCAAACCATATGAAAAACAGAGACAGCACACACTAGCTAGTTCTAAT
AGATCAACAAAGGATGCAAGGAATTTTCGTTGTACTGTACGTACATACATATATGTAAGT
AGCAATATATTACTCCGTGGTAGGAGTACAAGTTATACGCGGTGTGTATACGCACGTACC
TTGGCGGTCAGTAAGTGGAGCAGGGTGAGGGTGCACGCACCCTCCAAACCCAAAGCACCT
CAAGTAGTGTGCGGCGCCCATATGAACGATCGATCGACTACGCGGACCCGATCGATACAG
CGGTCGAGGATCGCTATATATCGATCAAAAACCTGCCACGAAACCAACGGACGCACTGTT
TTGCCAAGGCTTATAGCTGGTGTTTGATCAGGGCTGGCTATAGCTAGCTAGTAGCTACGT
ACTGTGATCGATGGAATGGGTTCGTACGTTCTTCCCGTCCAAGTGAAAGAACGAGGCTGC
CTGTGAGTGTGACGGGACAAGCAAGCACAGGCACGCTTATAAAGCCTGTCTGCCTCCGGC
CGTTTAAGATATATACCGCCGTATGTGCTTGGGCAGAAAGGCAAGTCATGAACCTTCCTT
GCAAATCAAGTGCAATCATCGGTTGGAGGTGGCTAGTTGGAGGACGACGACGAAGCTTGG
AAGCATGCCCAAGACCGGCCGGCCAGTCGAGGTTGGCAACCACTCCAAGGCAAGCACAAA
TCCAGAAGAAAGCCATCGTTATCGTTGGTTTGGGTTTGGGTTTGGCAGGGGCTACGTACG
GAGGCCCTCGGATCGGGCCTGGACGGACCGCAGCCGACGGGTGCAGTATCTCTGCGCGTG
GGTCGGGCGGCGGACGTGGCGAGCCAGGGACGCGACGCAGGTCCCGCCGGTCGGTTCCAT
GATGCGGATGTCCAGCGTGGGTGGCGGCGCGGAACCTGGCATGGGAGGATTGCGTCTGTC
CTTGCGAGTTCGGGAAAGGTGGCGCGGGCACGCCTAGCTTCGGCCGCCGACGCGACGTGC
GTACCAGCGACGACGGCGTCCATCGGCAGAGAGGGATATGGCTGCGCGCGCTGTAAACAC
CGGACCGCATATGCATGAGAATTGAGAAAATTGAATCCGGTGCAAGTCACTGCATATACT
ACACAGTACGCAGGTGAAGACGGACTTAGCAATATATATGCATGAGAAATTTGAAGACGG
AGTACGTTACATGCATGGGACGGAAGGATCTGTACGTACGTGTCCTGATTTTGCGCTCCT
AAGAGCATCTACAACCATGCTATGTAAATTCGGACTCTCAACTCACTGAGCAATCTTCAG
ATCTGCTTGTTCATATCCGAGTCTTTCATATTATATCCGTTAAACCCATACAAAGCATGA
AGAAAAATATCCTGCGTATTACATACTGTCCTAATTTTCTTCGTCGAAAATGTGCACCAC
ACCGGCGCCGGGCGCATGGGAAGGGTTGGGCTCCTCGTCTTTCTCCTCGAGCTCATCCTG
ATCGATGAGCATCTGTGCTTCCGCCGCCTCCATCTTCTATCCTTGCCGACATCTGGCCTC
CGCAGCCGACTCCGAACGGGTGGAGTTGAGGATGACCTGTTGCTTCGTACACAGATCCGT
GTCCCCATGTCCTCCTTTGGCTCCGGCTCTGGCTCCGCCACTCCTCCTCAACATCCTCCA
CCACCTTCCGCTCTCCGGATCAACTATATCCGGAGGTAACCCCGCGGCGATTCGGACTTC
ACACCTTGTCTGGACCTACTCAAGGACCTGCAGTCGGTGCTCCGACGTTAGAAATTGACA
GCAACAGGGGCCATGGTGTTGCCGGAGAGCGTGGGAGAGGAGGTGACAGGCTCGGGTGGC
CGCACGGAGAGGCGGGAGGTGGACATGCTAGGCTCAGAGATGCGGGTCGGCTTAAATAGC
CGGGTTTGGCCTCAAATGGCGACGTAGAGTCGGGCTGAGGGACGCCGCCCGACTTAAAGA
GCCGAATTTGGCCTCGGGCGACGAGCCGAAGCGGCGTCACACGATGTTCATACCGCGGCG
ACGAAGGAAAGCGTCCGTCTGACGATCAGGTTTCCACGCTGAGTCCACATAGTGCCTCGT
CGTGAGGCCACGTGACGTGTTCGAACGCTCGCATATCTATCATATATTTAGGTTGGATAT
GAGAGAGATGTCGGTCAATCCAAAAATTTGAAACCAGTTTGAAACGTCCGACTAGGTTAA
GATTTCGTAATTGATTAATGACCGATCGAACATTTAAAAAAGGTTTAAATGCCCTGGTCT
AAGATGACCCACGGACATCTGAAATCACCCGCGTACGTACGTGTTTTCCGAGTAAGTGTA
TCACTTCAAGCGATGGCGTACTGGTCTAAGTTTATTATTATTTCCCCCGAGACAAACAAT
TGTTCTTGTTTCAGGAAATCCCGAGTCGGCTAGTGAGTGAAGAAATTCCATACTCAGAGC
ACCACCCACCATGCAATGCCAATCGACACGGCTTTTCATCATGAAGCATATATCCTGACA
CGCTAACGTAGCCAGGAAAACAACGTTGGAGTAGCTCGAATTAATAAGCCTCCCCTCGTC
CCGATCCTGCTAGCTGCTGCTCCAGACCGGTGGCACCAGTGACCATGGCCAGCTTGCGTC
GCGCCGCATGCGGATGCTTGTCGATAGCAGAACCGCGTTGGACACGGACAGAGGCAACAT
AGGAGTTGTTATCAATCCACAGGCCGCAGCGCGTGCCACTGTTGCTCTAGTGAACACGAC
CTCTTATGTGGTGTTTCTTTCCAAGGGGCTATGACTTTTTTCTTTATTTACAGGGACTAA
AGAAAAAAAATTGACACTCACACTAAGAAATGCAATAA
