Contig Data
morexGenes
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Map Locations of contig_40259 (7703 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_40259

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_55785 5 1881 bp AK250484.1 Available Available None





CDS Structure of MLOC_55785






Contig Sequence (7703 bp)

>contig_40259 7703 assembly3_WGSMorex_rbca.fasta
CCGCGGTTTTACATCAGTTGCATCTCGTGATGTAAATTTGCATCACAAAGTTTTCAGTTT
TACATCACCGGGAGGCCGCGGTCCAAATTTCTTTACATATGGACCGTTTGTTGGAGCATC
TTTTTTGCCCCAGACGGTCCAAAAGTTAGTTATTTTTACATTTGGACCGTCTATTAGAGA
TGCTCTAACCTGATGATTCATACACTTATACAAGATACACCCAGGATGGTTTTCAGTAGT
GGACTCAAACCGCCTGATCTTTCGGATCTTGCAATCAGGGCACTGGATCAAAGGGAGCCC
CCAGCAGCGGCCCCCGATGAGCTAGCCACGCCGGACATAGAGCAGGGGATCAAAGGGGAA
TCGGCTGTGTACGAGGGGAGTAGTATGATGGAGTAGAGGATTCGAGCGATTTCGGCGGCG
GACGAGGGGAACGAGAGGGGGGTCGGTGGCGGACAAGAGGAACGAGAGGGGAATCGGGTC
ACAAGAAACCCTCGACGTGTCATGTCCAGCACCACGAGCCAAAACGTTCTTTTGGTCAAA
TTCGTCCACCTGAAAGTGATACGAGCCGACACGATATGGTTTACCGTACAGGGACCGAGT
TCAGCGAGTCCGGTGACCATAAATTGCGTTTCCATTAATACAGTGACGAGAGTGAAGTCT
AGAACCAAGCTCAGTTACTGTAGATGTAATTTTCTCCCAGCGGTGATGCGGAGTTCCAGA
TGTGGCATCGAGCATGGCTCATGGCGTGTCGTCGACATGCTTGTTTATGTGAAACATGTG
AACCAGAATTACACAAAAGATGCAAGTTTTGGGGGTACTTTTCGGCTCATGTACACTCAA
GCTTCCCTAACTTTGACTCGCATTATATCAAACTTTCCATAGCTTTGTTGTGCGAAACAT
CTACACGAAAACATTTCATAACATCACGAACTTAAGAAAAAATATTAGCATACTTATGTG
AACAATAATGATTAAAGTTGCACAATGAAAACCATCACTCCGTCTAAAAACCTATCCACA
GAAGGAGTAGATATAGCTTGTGACCGGAACCGAGTTGGCGTGACATACGCCTTCACACGA
CGTGTCGGTATGAGAAATTGATGTAAATTCCCATGTGGTGAAGGACAAAGCAAGAGTTTG
GTGGTTGGTGCAATGCGCCTGTCAGCAAAGGAATGTTCAAGTTGAAATGCAAGATTCGCT
ACTGCGCTATCATTCTGTTCCACACGGCCGGCCGTACATCAGAAAAAGCTTCGGCGTTTC
CCCGTCATCGCCCTGCGGGCGGCCTTTGCCCTCTGGTGGTTACTCGTCGCTCGCTCGCTC
GCTTTGATTATTGTGTGGAGGCCCCTCCGTACTGCGTCGTCGTGTTGACGACGGTGACGC
CGGCGGCGACAGGGACGGGCTACCGTGAAAGCTCAAGGTCGCCCATAAAAGTTGCTGCGA
TTTTCCAATTATTCTTGGGAGGAAAGGGAGGCTCTGCAGTGGACGGGGGGTGGCTGTGAT
GTGTGATGAGCCCGGTCACTCGCCATCAGCCTTTAATTTTGTCTACGTGTGCTTGATGTT
CCATGTTGCCAACAGAGGACACGCCAACGATAAAGATTCTCAAAGCTACAACTGTTTTCC
TAGGTTAGGTATTGATTAGGTTAACAAAAGTAATACTGTTCTTGCTAGGGTTTCCTCGAT
TCGTTTGAAGGATTTATCACATGTCCGAGTCCTTACTAATTTCTTTCTAGATGACTTGTT
TGATGTGAATCATAGGGTTGCAAACTATAACCTCCTAGTTGTTTATTGATAATCCTGCAA
CAAAAAAGATCATTGTAACCTCCTAGTTTTGTCGGTACTTCCTCTACATAAAATACAGTG
CGTATTATTATTTTTCTACAATCTACATAGTTTGAGCAAGTTAATGAAAATAAATATCAA
CATCAACGACACCAAGCTTGGTCAAACTTTGTCCTGAGTCATATTTGGTTTTGCATACGT
GATATTTCTCTATAAATTTGGTTAAATTTCACAAAAAATGATGAGGGACAGAACTACTAT
ACATTATATTGTGAAATTACAATAGTACAAAGGTATTCCCATCATGGAAATAACTACCAA
ATGTGGCTATTTGTTTGCATCGCTAAACTGTTCGTAGTGAACTCGAACCATGACACCATT
TTTTCGAGCATGTCTGATCTACCTCGGGTACATTTGATAATCATCATCCCGGTCTTTTGC
GTCATCTTCCCTCTTCCGCACCTAGATCGTTGGTTGTAGCCACGTCGCGCTCCAATCTCA
AATTAGAGCAGGCAGCCAAGGAAAAAATTACCGACATGTGAATCGGCCCTCCTCCCTAGT
GGGTGTTATCTTAGGTGTGGGTATTCAGTTTATCTAATACTTCCTCCGTCTTAAAATAAG
TGTCGTTGTTTTAGTATAAAATTTGCATTAACTTAGTATAAAATTTGCGTCACTTATTTT
GGACGGTATTTTATAAAGAAATATGAGAATGTTTATATCACTATTTTATACTCCCTCCGT
CCCAAAATAAGCGACTCAAAAACGACTCAACTTTGTATTAAAGTTGGTACAAAATTAAGT
CATTTTTGAGTCACTTATTTCAGGATGGAGGGAGCATTTGTGTATGTGTGACGTTCATGT
GCATCTTGACTATGGAAAAGGACAACTGAGACTTGTATCATCTTTGAAGCAACGTGAATA
ATGGCAATACGTGCAAAATTCACAGGCATGCAGGCCATGGCGCCATGGTAAAAAAGAAAA
ACTCGGCAGCACGCGGTGCAGGGTCGATCGACGGAGCGAGCTGGCGATTGGGCCACATGG
CACGCGCGCCCTACAGAGCACACAGAGCATCCAAGCGCACGCATCAAAGAGGAGGCGCAC
ACTTCACATAGGATTCGCCCTCCCTCCCTTCCTTCCTTCCTCCGCCCGCCGGGGAAGCAG
CGTCCATGACACTTACGCCCGTGACTACCGACCGTGGGCGACACTTACGCAAATCTCGTG
GGGGAAGGTTCTCCCCCGGGCGGGCCAAACAGGCCGAGACACCGCTAGAGACAAGCCACA
TCGCGTCCCAACCAATCTCAATGCCTAAAGAAATCGCCGGATTTGCAGTCGCAACCTCCA
TTACCACGACCTTTTTCCTTTAAAAACCTAGGCCTGTTGCATCTCGTACTACTACTATAG
GTTTCATGGTGCAGCTAGCGCTAGCTGTGTCGGTCATGAGAAAGATACCGGACTGTCATG
TTCTCGGCTCTCGGGAGGAGGGAACTGATCAGAGATGAGAGGGAAAGGTTGCAGGAGTTC
CCAGGTTACGCACGTAGATGTGGTTGGGGTTTTGCAACGGAGCATCTTCCTTGCTCCTGC
AGGCTGCAGCGTACGCCCGTCCCACGGTTGACAAGAAGAGGCCACGGGACGATCAGGGAC
GCGCCAAGATTCTCTGGTCCGTGGAGGAGTACCGATAAACATTCAGAGTTAATTACAGAT
AGATCGTCAGGCTTCAGATATTCAGACCACATGCATGCATGCATGCATGCACATCGATCC
GATCATACGTTGCCTGGTGGGATTTGACCCACGGTAGACAGTGATCCGCTCGTTGAAGTG
AAAGTAACAAATGAAACACCTGCTTGTTTTTTCTTTTTTTTGCTGCTTTGACATCTGCAT
GTGCACGTGCATGCATCGAGCTCGGTTTACAACATATACGTGCTGCAGTTAGTTAGATTT
GGTGCGTTGATTCGATCGAGTGAAATTAGTAGACGAGCTTCGCTGCTGAAACATATTGTG
GGGCTTGGGTGACAATGACCAGAATTCAGAAGGAAGGAAATGACCCAAATTGAAGTACGG
CAGGGGTAGAGAGACGGGCTGGACTAGCATCAGTAGGATGATGTCCTCAAACCCTTCGAC
ATTTTTTCTTCTAGCTGTCACTTTCCACATTTGGCTTTCCAAACCCCATCTCTTTCCAAA
GTGCGGATGAGAAGAGGCCGGGAGTCATCAGCAAAACAAAAACCAAGCTAGATAGGTGAG
AAGATATCTGCCTTCTTCTTAGGAGTTCGAGCAAAGGATCTGGTCGATGTTCCCGTCAAG
GCATGACGACATCGGTCGGTCCCTACCTGAGTCTTGAGAGCCCCTAACCCTAAGTTGTAG
TCTCTAAAGTTCAGAAGACACGACAGAAAGTTAAGCATAGTGCTACTGCAGTGAAGACGG
TGTCTTCACCTTTTATCCAAGATTTCACTGTTGGTGCCTACTTGGAATACAGCAAAAGGC
TCACGCGCGCAGGTCAACGTTGCACTAGTTGCAGGTAGACAGTACGGCTGGATTACAACG
CAGACTTGGAAGAATGCAAGGCACCAGCTACGAACGCACCATCACAACGCAGGAGGACGC
AAATGATCGGAACGCACCATCAGAACGCAGGAGGATGCAAATGATCGGAACGCACAATCA
CAACGAAGGACGACGCAAATGATCGGAACGCACCATCACAACGCAGGAGGACGCAAATGA
TCGGACTAGAGTCCTTGCTGTATGCAACGGCATCCACAACTAGAAACGGAAGCTGATCAA
CTTGAAGCAGAAGCTGAAACCAGGGGGTCTTGCACGTTTGTCCTGAAACACTGAAACAGG
AGATGCAACCTGCAAGTATGGATCGGGATCGCACAATGCTACGGTAAAACTGACCTGGGT
AGCTGTATCATCCACATTTTAAGCAGCAAAAAAAGGAAAAGGAGAAACCAGCCATTTGGA
CAATACCCATGCAAGTCCTTTCCAACATGACCAATTTTGAAACCAAGAGGCAGAAGTCCT
TTCCAAACTGAAAACAATTTCATAATATATGGTGGTTCAGATACCAACACAAATAGGTAG
ATGGTTACACAGAGTTTCACACGGCACAACGACGGAAGTTTGCACGGCGGTGTTCTCCCA
GCGCCACCAATGCAGTGCAAATAACACACCCAAACTCAGTCAAATAGATTCAGGTTTGCA
TAATAGTGTAAGCAGTAACCACGGCCACCTTAACAGTAAAACATGACACGCTTCACGTTT
TCCTTCAGGGCGGGGAGGGGCCTGACAGCAACATTCCCAAACGCCCTGTTATTGCGTCCA
CCCTGTGGAGGGCCACGGGCACCACTTGCCATGGACCCACTATCCGAGGTGTCCGGCTCC
ATGTAAAACCGAGCCCGGAAGGCTGCCAAATGTGCATAATATGCTGGAGGCACTGCAAGC
AAACACAATAGCCAGCGTCAAATCTTCAAACATTAGTAGTGCAACGCAACACTGGTAGCA
TGAGAATCGTTATTGGGACTTACCAATTGATACAGAGCGGGTGCACCTAGCATACCTGAA
TCAGTAAAAAAATTGTTCAGTTGGGGCGAGTTAAACAGTACTCCATTTAAACTAAAAAGA
TTCGAGACACTAAATTACGTGTAGCACAAGTTGTTTGTTAGAGTTTGCAACTCATCAGCA
GTGAACTTGTTCTCATCCCATAGTACGTGATAATGAGCAGGACGGCTTGTTCCCTGAACG
AAATTATGAAGTAACTCAGCAATCAGAGTATTCAATAAAATGCAGACTGCAAATAAAGGA
AAGCCAACCTGAATGCCAGCGTGGCTACACAAGTAGAAATCAAACTCGGTCGGATGGCAA
ATCTTTGAATCAACAACAGTGCCTAGAAATAGATACATCAAAAAGGTCCATTACACACTC
ATCAGATTCAGAATTGAGTACGTGAGCAGAAAAACGCTTGTGTGTACAAACAACTAACCA
GGCAGTATGTTTCCGCTTCTATCAACAGTACGTTGATCATTGTGGTTATTAGCAAAAAGC
CTGGTGTGATGCCGCTTCTGGACAACTACAAAAGTAACTGGGGGCTGGTAATTGGGCTCC
AAGGACGCACATGCCTACATTTGTAGTTAAGAAATAACAGTTAAGAGAAACAGGCAGAAT
GTTGCCAAACAAGTGTAGGTGTGGCTGGTTTGAGTTAATCTAGAAAAAGTGTGAACAAGT
AATTCCACCTTTCTAATGGCATCAAGTTCATACAGAAGAACTTGATAGAACTGGCCCTCG
CTGACACCATCCCTGAAAATACTAATTGTTTAATACAGACAAATGTGCTTACCAAACATG
CCCAAGAAAGGATAAGAACCTGTAAAATATGATTCTCTGGGGTTTCTGTCCGGTTGCCCT
CTTGAAAGAAATGAGAAGCTCCCTGAAAATTTAACAAAATTTGCGCTGTTAGCAGCAATT
AGATATTAGAGGAGTAATATATATCATCACTACAAAGATTGTACTTGATCATGCCACCAG
TCACAGTTCCTCTTTGGGGATCTTGCCATACTTTAAAAAGATCCTGTATCAATTCTTGCC
TATGGGCTTGGGCGCTAACTAATCCTGCATACTTAGTGACCTCAGGCCAGTCTTGGGAAG
CAACCACCTGAATTAGAAAATATTGCAGTAGGTTCACAAAACTGTAGAGCTACCAGTACA
CCTAGCAGGTGCCATTGTATCATAACAGAACTTGAGACATTTTCATAGTAGCAGTAAGTC
ACTTACAGCAGCAATGGAAGGACTGGAATCTTCTCCAGGATGAGGGTGTGTAACATCAGC
ACCAAATATTATTGTTGGTCTGTCACTGACAAGGGGAATCCTCCTGGTCAAGGCATCCAC
AAGTACAGTATTCCTTCCGCCAACCTAAAAAGTAGGAAAACATATAACAACCGAAGTGCA
TAATAAAGATCGGATGGTTCAAGGACAGTGAAATACCTTAACATTAATCTTAAGAGCTAC
ATTTGCCAGATACTGCTTGCTCATCTTAAAAACATGTTTCGTCAGACAACACTGAGATAC
CAATCCAAGATCAGTCTCACAAATCCTTTTGAGATCCCCTGAGAAAGGAAAATAATAAGC
AAAAATATCCTCCAGGCAAGCTTTAAATGTCCTTTGGAAGAGATCATACCATAAAGAGAA
CCATTATTGTCAGGCAGTATTACAATTAGCAGGTCAAGTTCTCTTCCCTGGGGTCTGATT
ATATTCATGGCATCTTGATAACGCGCCTTTAGTGCTCTTTCTACATGTTCAGGTCTCGCA
GTAAGTGGGGGCAGCACAGGTTCAGGTGCAAAGTCCTAAGAAAGACAGAGAGAGTGAGAA
TTTTAACACCAGGGAATACAAAATAAAAGAAGAAAATAGATATATTATTAAAAGCTACTT
GGATGGCTCGATCATACCATTCCAGATATTTGGCACATTATAGCAAGCTCATGACAGAAA
CCCCTGGCAGCACTATCTTGCACATTCCGAGAGAAGTTTATACATGCCCAGTGGCTGACT
CTACCACCATTCACCATTTTCTACCAATGAAAATGAACACATGAGAACTACATAAAACAT
AACATGACAAATTACGGCCACTAGTCCACTACACATTGAAAGAAGATGTATGCCTTGGTT
TAAGAAATGCTAATGTCAGAGAGATAACAAACCTAAATAATATCGCTTTATGGTAAATCA
TGCAGACTCTTAAAATGTTCACATGCGAAACTAGACTGTCTTCAGGAAATATGATAGAAG
AAATGAACATTAAATAGCAGCAATAAAACTCCCCGGTGTTAAGCACGCACTAGCCTACGC
AACCAAAAGTCCGAACTGATGGAAAGGGCTAGTGCAATCCANNTATACTGTAACACCCCC
TCTCACGTGTGACGGGGAAGACA