Contig Data
morexGenes
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Map Locations of contig_40256 (7054 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_40256

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_55781 10 1671 bp MLOC_55781.5 Available Available LOC_Os01g48990.1, FRAME:-1, EVALUE:0.0, 13101.m05089 protein uncharacterized kinase mug58, putative, expressed





CDS Structure of MLOC_55781






Contig Sequence (7054 bp)

>contig_40256 7054 assembly3_WGSMorex_rbca.fasta
CCGCCTCTCCCACCAGACGCGTGTCCTGTGTTGGACAAAACCAACTTCGGTGGTGCCGAT
GCAAACGTCCTAGACTCCAACGCCCTACGTCTCCTCCTTGGTTTTGCCCCGAGCTCGAGC
CCCATCCCTCGAGCAAATCCGCAGAGTTTCTACAACAACGGCGTTGTTGCGATTAACAGC
GACGTAGCTAGTGCAAATAGGCGCAATGACGAGTTTTCACAACTTGGTCTATGTTTCAAA
AAATTAAAACAAATATCTTTTGTTGCAAAAGTTTTATACGGCCTGACCTACGTGCAACAT
GACCTTTGTTACAAATTTTTCTGCAACATGATCCTTGTTGCAGAAAATATTCTATAACAA
ATCCTATCGCAAAAAAAATATACGGACATTTTTGCAACATGCTCTTTGTTGCAAAAGAAA
AAATTGCAACATGATCTATGTTGCAAAAGACCCGTCAGTCACTTTTTAACCCGTCAGCCG
GACGCGTAGCAGCGTGCTTGTTTCTGCAACTGGAGCGTCGTTTCGGGATTTTAGGTGGTG
GACGAAGACGATCGAGCTGGTGATCGGACGATACGCGCGTATACATCGAACGGCTAAAAA
GGTGGTGGATGATTACTATAAACCCACCGATGGATGCCTAGCAGTCCCCATAAAAAAATC
AGCAAGATACACCATTTTTTTGTTGAATGTAAATGAAATTTCATTTTTTTAGAGGAAAAT
TAAACTTCAATTGTTTTAAACTCAACACGTACGCAGATGCGGCGACTCATAAGATTAGCA
AAGCAAATAATAATTGTTGCAACATCCTAAATCGTTTTCTTCGACAAGGCAACTCTAAGG
TTGCTTTAGAAAATAAAAAAAGCAAATAAAAAAAATCACCGAGATACACCTTCTTTTTTT
GAATGTAAATGAAATTTAATTTTTTTTAGAGGGAAATTAAACTTCACTTGTTTTTAAACA
CAACACGTACGCAGATGCGGCGACTATTAAGATTAGCAAATCGAAAAATAAAAATATTCC
GTCGCCGGGACTTGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTAACCACCTAGAC
TACGACGGATTGCGTTATCCTGCAGGTGGTGAACATATAAATACACGTTAGCTCACAATG
GAATTTCCTCCATAAAACACCATCATTTGTTTATAATAACATAGTAGAAATATGTAGTCC
ATGATTGTTAAACGTACTGCACTTGCGTCTATGTTTTTATTTTCATCGAAATTAACCAGG
GGATTGCTCAAAATCATATGTAATCTCTTTTAGCACACTCTTAGCTACAAACATAAACGT
ACTAACAGCGAAATTTAGAAATCACGTGCACCCGGATCCGCCAAGTTCTTTGTATGGCTC
GCGGCAAGGAATCACTGCTGGACAACTGATAGACTCCAGAGACGGCTGCTGCCTCTTCCG
TCCACGTGTTCATTCTGCGACCAAGAGCAGGAAACCATCAGTCATATAACGCTCGGTTGC
GTCCTAGCCAAGCAAGTTTGGGCGGCAATCACCGACAACTGGGTCAAGCCGGAATGGATG
CCGCAAGTAGGCTCTAAGCTAGCGGACTGGTGGATGTCGCTAAATCCTGAAAAACAACGA
AGGAAAGAAGTGTGGACAGTTGGCATGGATGTTGTGGAAGCACAAGAATAACATGCGTGA
AAGAATGCGAGGCTATTAAGGGTAGTGAGGTGTCAACTTGATGTATCCTTGAAAAAAAAA
CTACCAGCGACAATTTAAAGTTGGTACAAGTAACTAAGATGAACGGATACGCTTTCATGG
TGGCACAGGATAAAAGCTTAAGAGAATGCAGCAAAAGACTTAAACTATTGTGATACAAAG
TGTGCGCCTCATCACTGAATGCGTTTACAATGAAATGCATCGGATGATGCCCCCAGAACT
CAATCAGACAATTTGCAAAAACGCTAATTCGGAAACAAAATTAGCACACAGAGGGGTGAC
ATAGGAAGGAAAAATGGGATGCCAGTTTCTTTAAATAGATAGCACAACTTGATATACATC
GAATTTACACGTTTAGGAGATATTTAAGCCGTAAGAAACAAGAGGATGGTGGTGCTTGCT
TGGCATAAGTGGTCTCAGAAAGATCAGAAATCCCAAGCTCAACCACCAAGTCAAGATATC
CATTTCAGAATGTACATTCAGCACTCAACTACCAGAGATAGGAGTCCTCTCTTCGTCTAT
GTCAATGACCAGCAGATGGTCTTCCTTCGCGCCATTTGGTCCTTCTTTATATAGAGTGGG
CAAATACGCATGGTATGCTGGTAGGTAGCGTGATACAAAATCCATAACCTGCAATAATTA
CAAATTTTCATGTTTCCAGTCAACAGCATTGGAAAGAACAGTCATCAATGGACTAAGCAA
ACACTATTCTGAGGATATAAAGTAGTTTACTGAAGAAATTGGACAAGTCAATCGAATATG
ATTTGATAGCCTTAAGTATTGTCCAACTATGACACAATTATTAAGCTGTTGCAAGTCATT
TTGCATTTTTATTTGCTCATTTGTCCTGATTTATTTTATTCAGGAGATAGGCTCTTGTCT
CTCGGTATGTCCTGATTTGAGAGATGCACTATATCCAGTTTGGTCACAACGCACAGCTAA
GAACTCAGAAAGAGCTATATCTATCAGGTGGCAAATTTTGCTTGGGCAATGTAGGATCAG
AGAGCTGTTCCTTGGCAACCAGTAGGACGCCAATAAATGACCCAACTGGAAAGGAAGGTC
GCTGTAATGGACGAATTAGCATGAGAAACACACCTCCTCATCAGACATTCCTGTTTTACC
ATCAGCTCTCATAGCTACCTCTGCCTGCGATTAAAATAACAGCATCAGAAAATAATAATT
TACTGTTTTATTGTACACACTGTGAGACCACTAGTTGGATAAGTCTGATAACGACCTGCA
GTCTCCACTGAAATACACAGTTAGGCTCCTTGATTTTTATGACAATCCATGACTCGATGA
ATCTGTCCCACGCGTCATAGTATGCTTCTAGGTTCTTATTAACCACCTCGAGCTGAAGAA
GGAAACATGTTCAAGTCATATTAAAGTATAACAAACAAACCAAATAATGTTATGATCCTA
GAAACTCACCTGAGGATCCACTGCTGTTACAACTTCATTTGGAAGAGGTTTAAATCCAAG
CATCCATCCTTCAAAGAGAACAACCTACGAAAGGAAAGCAGGAATGCGAGAAGTTGAGAA
TCACATGTCTCAACTCAAAATGTTATTCAGCTAAACATGACATTACCTCTGTGGGCCCTT
CAACCTCTGGCCATGTCGAAGGATCAGCCCGGTCACCTCTTCCACCAAAAGCGGACTACA
TGGATATCTGAGGTGTATCATTTGGCTACTCAAATATAAACATAAGGTACGCTAAGATAA
CTGCAACCTTTTACCTTGTCATACCGTGGAAGCTTCATCTTCGTACCTAAATGTTGTTGA
AAACAACAGTAATTTCAGTGAAAATATATTCTTTATATATGAATCTATGATGCATGCATT
TCTTCAAAAAGAAAAAGAAAAACTAGGATTCAGCACCCTTAATAATCCAAAGAATACAGA
AAATAGACTGCGGAAATGACCATGAAATAGAGACTTGTTCACAATCGATACCTTCCTTTG
TTAGTTTGATCAGTGACTCAAGTGTTTCAACTGAGAATTGGAGATCGTGGCTTCCAGCAT
TTCCACGAAACTGTAAAGTTTTGGTCAGGTACTCTCAGTTCATGTTAAACAGTATCTAAA
TATCTAAAACGCAGGTAGTACAATTGACTAATGGGGGTGTTCTTGTACCTCTAAAAGAGC
ATTTCCAGGATGTGCTTCCCTCAGTTTACCCTGCACATATGCATCCATCGATCATCATCG
ATATTTCAACAGATATATGCAGAAAAAAATGTAATTCCCAGAACAGAATTTAATTGCTCC
ACTGAATATTCATGCCTGTTCTGCTGCAGTCAAATAGAAGTCATCGATAGATAATGTGGC
AGAGTTCCTGAGGCACACAACAGTTTGGCTCTTAAATTCCATTCATAGAGGCAAAGAGAA
CACATGGTAATCAACATGATGAGGACTCACCTACCAGAAACCCGAAAAAGAAAATCAAGG
GCGAAAACAAGAGTCGTCTTCCCGCTGCCTTGGGGAGCGCTGACCCCAATCTACAAAACA
GAAAGATGATCCATTTATGAAACGCAGGTGAGCAGAAGTACCTAAATCTATTCATGCTTG
TAACTTGATATATACTCTGGTATCATACTGGTGAGTTTTCTGATTTTGTGCTTTGTGGTA
CTCTTGATTTATCAATCACACAAGAACCACTTTCATGGTAGTGGACATTGGACAGCATAT
GCTTCCTATGACATTTGTTTGGCTAAAGGCAAATGCAGTAGCATCTTGGGTGTGTTTGTT
TGGCTAAAGGCAAATGCAGTAGCATCTTGGGTGTGTGATGCAAGAAATAATGCACAAGAA
TATGTGCTCTGTCCATCTGGCCGGAAGATGCCACCAGAGATTTGGATGTTCCGACACTAG
ACTAGAGGACACAGTTATCCTATGAACTAATGAGGTGAAAACTGAAAATAATTACTAGCA
TTGAATCAAATGCATACCACTAATGGCGGGATCTCGTCGCCGTCGTTGTACTTTGACCTG
TGATCGGCGACCTGGTCCTCGCACCAGAGGAAGACGGGTATGTAGAAGTGGTATATCCTC
GACTTCTCGGCGTCCGTCAGCCGGAGCTCGTCGATGCGGAACAACCGGCTCACCTGCGAG
CCGCACCACAGCCAGCGGTCGATGGACTCGGCGATCTTCTCCCGAGTGTAGCCAATCCTG
TCCACCAGCGGGCCGCTGCAGATGAACTCGTACAGGTCCTGCACGGCCGAGATGAGCGCC
GGGGACGAGGCGGGAGCGCCGCGCGCCGGCGCCAGCGACCGCCCGGCCGCCGGGCCGTGA
TCCGGGCATGCGAGGAAAGCTGGCGCCAAGAAACAAGAAACTTGATCGTGTCAAGGAAAG
CCGCAAATGGCAGGAGATATCTACAAGTCATCGCGAGCAGCAATCGCCTTCCGTTGTGAA
GAAACAAAGATTACCATCCATGAAGTTTCAAGGGCCTGAACGAGGACGATCGAACTAACA
AAAGACCAAAATGGATCCGCAACTGACCAGAAAGAGGGACACTTTGTACGCCTCGTTAAT
TAAAAAAAATCAAACGAACAAAAGAATCGCATCCACCGTCCAAGCGTTCTTATCCGTCTC
GCTGAAGTTGCGGCGGGACAAGACGGAGCCGGCAACAATAAACAAAACAAGCACGGCAAA
AGCCAACAGTGCAAGGCAAGTGGTAGCACGGCACAAACCGAGCAAACACGGACGACGGAT
TCCAAGGAATGTCGTCTCTCGTGTGAGAAAGAAAATGGGCGGGAGCGCCGGCCTAACCTT
TTCTTGACGGGGTGGCGGCGGTCACGGTGAGTGAGCAGAGGGCAGCGGCCTTGGGATGGT
AAGGCTTGGCGAGGAGGGGCGGTGGCGCGGATGAGGAGACCGCAGCCGACGCGGAGAGCG
GCGGCGGGGCGGCGTGGAGCGGCGTCATCTCTCCTGGTCCCGAGCAGACGGCACGAGACG
AGACGAGGGCTGGACTGACGTGCTTGGAGGGTGCGAGATTTTGGGGCGGAGGAGCGGAGG
GGATTTTTCAGGATTGGGCGCGGAGTGCAGCCGGCCTCTCGATGCAGTGCGTGCAGGGCG
GCACGCCAGCGGTCGCTTTCCAAAGCCAAATGAAATTCACATTTTATTTTTTCCTCCAAC
TTATAAGTGCTCAAAATTTCCAGAAACAGGATTGGAGAGACGTTTTATAGCTCTGTATGA
TTTCGAGATCAAATTCAGTTAGAGCAACTTCAACCTGTCGAAGACGGTGATTTTGTCCTT
TTTTCCGTTTAGGTCGTTCGTCGGTTCTATGTCCGTCCATTTTATAATTTGAGTCGACAG
GGCTCTTAACGCGTCCATATTTGTCCGCATGGTCCGCTAGCAGCCGATTTTCAACAAATG
CAAACATTTTACATATTTTTTTTAAACAAATGATATAGCATAGTTTCACATCTAAAAATA
AAATACAACAAAGTTTTACAAGCTCAATAAAAAATAAATTGTCTATAAAATAGCTAGCTT
TTTTGAAATAATATATTTTTTTATTAAATTTGACAAATAATATGCAGTTTGAATTATTTA
CAAGAATAATACATCGTCGCCGCGGCGTAGCCGACTGGAACCTATCGGCCGCTGCGTAGC
CGAGTCGCACCTATTGATTGCCAACATGATCCCACATATCTCAACTAAATCATCTTGTAA
CTGAATATGAGTTTCCAAATCACGCATTTCATGATGAAACTGAATGAACTGTGTAAACGA
TGTCGCTTCTCCGCCATGCTCACGCACCATATTGTCACCCTGAAACTCAAATCCTTGATC
GTGGAGACGTTTCGAGCGTTCATCCTCTACGATCATATTGTGCATGATCACACAAGCGAG
ACGTGTCTGCAGCAGTCGGCTCTCTCAAGTACTCAGCGCCAAACACTGCAACCACAGCCT
TGCAGAATATGTACAACGACTCTAGGCACGTAGACTCACTCATACGGAAGTACTCATTGA
AAAGATCATTGGGTATTCCGTAAGTAAGCATCCGGATAGTTGTGGTGCATTTATGATAAG
ATGATAAACCAATCTTTCCAATAACATCCTCTTTGCACTCGAAGTAGTCTTCGTATCCGA
CCACCCCCTCTCGAATCCGGTTGAAAACATTCCTAGCCATACGGAAACGACATCGGAATT
TCTGATGTTTAAACAGCGGATTGCTTGTGCCAAAGTAGTCCTTCCATAGAAGGAAATGGC
CGCTCTCTCGGTTGCGATTCAATGCCGGAACATGGCCCGGAATCGAGCCCCGGAACAACG
GCCACTACCTATTAAAGTGGTCATGAACCAACACGACAAGCAACATCTCCTCATCGTAGG
AGTCGCACAAAACATTATGGAAAAAGAACTCGTC