morexGenes - Barley RNA-seq Database

Contig contig_40236
Source Contig contig_40236
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_40236 (9021 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_40236

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_55748	2	1422 bp	MLOC_55748.1	Available	Available	LOC_Os08g04840.1, FRAME:+2, EVALUE:1e-117, 13108.m00466 protein MYB family transcription factor, putative, expressed
CDS Structure of MLOC_55748

Contig Sequence (9021 bp)

>contig_40236 9021 assembly3_WGSMorex_rbca.fasta
GGGGGAGAACCTGCGTTTTCGCGGGTAGGGGTGGGCATTTTGGCGGTTATTTTGCGGGTC
GGGGCATTATACGGGGTCTCCTAGAGGTGCTCTTAGTGTCTAAGCCACAACATGCAATTC
ATTCACAAACCTGTAGCCTGTGAGACTCCAGTCTATATCTAGAACAAAAATCATGCAATC
ACACAAAATTACAAGCAACATCTGAAGCCATACTAGGATATTCATTCACAAACCTATAGA
AAAATAAGAAACATAGCTACGAAACTACAACAACTACCCCACATGATCTATCACCGTCGT
GAACATCGTAACCCTAATAGGGTTAGGAGAAGCAAACTTTTCAACAGGCAACGTCTCAAG
CCACAACACACAATTCATTCACAAACTTGTAGCACTTTAACACTCAAACCTACATCTGGA
ACAAAAACCACGTAATCACACCAAACTTTCACGCAACATCTGAATCTGTACCACGTAATT
CATCCACAAACCTGTTGCAAAAATAGAAACATCGATATGAAACTACAACAACCACCCCAC
TTGATCTATCACCACCGTGAACATCGTAACCCCAACCGGGGTAGGAGAAGCAAATTCAAC
ATGCAACATCTAAAGCCACAACAAGCAATTCATTCACAAACCTGTAGCACTCTGATACTC
AAATGGACAACCGGAACAAAAACCATGCAATCACACAAAAAATGCAGGCAACATCTAAAG
CCATACCATGCAATTCATTCACAAACCTGTTGCAAAAATAGAAATATCGCTATGAAACTA
CAACAACAATTCAACCCGCTCTATTGCCGTCATGAACATCGTAACTCCAAAAGGGATACG
AGAAGCAAATTAAATAGGCAATGTTTGAAGCCACAACATGCAATTCATTCACAAACCTTT
AACACTCTGATGCTCAAATCTATAATTGGAACAAGAATCACGCAATCATACAAAAATGTA
GGCAACATCGGAAGCCATACCAGGCAATTCATTCACAAAACCGTTGCAAGAATATCAATA
TTGCTATAAAACTACAACAACCACCCAACCTGATATTTTGCAGTCGTGAACATCATAACC
CAAAAAGGGGTAGGAGAAGAAAATTAAATAGGAAACGTCTGAAGGCACAACATGCAAATC
ATTCACAAACTTATAGCACTCTTATACTCAAATCTATAACTAGAACAAGAATCACACAAT
CACAAAAAGAATGCACGCAACATCGGAAGACATACTAGGCAATTCATTCATAAACCTGTT
GCAAAAATAGAAACATCGCTATGAAACTACAATAACCACTCCACCTAATCTATGGCCGCC
GTGAACATCGTAACCCCAATAGGGGTAGGTGAAGCAAATTTTTCAAGAGGCAACGTCTGA
AGCCACAACAAACAATTCATTCACAAGCCCATAGCATTTTGGGAAAGCAGACATGCGGTA
CGGATAACATACCCATAAGCAACTCAACGTCAACTCCTAAAAAAAGAAAAAGAAAATGAC
TCACCGTTAATGTGTAGTTCCGAAGAAGATAAGGGCATATTCAACGGTAACTCGCAAATT
TCCTTATGCAATCCTACGTGGATAGGAGAAATGAGTGTGCGAACACATATGCGGGAGGCC
GCTTTTCGACGCTATCTGCATACATTTCAAACACTTCGTGGACCAATCGGACGAAACTCA
TGTAAACACAGGCGGATTTCATGTAAACATGTCGGATTTCATATAAACATGATGGATTTT
ATATGAACATGAAGGATTTCATTACATTTACATCAACTAAGCGGTGCTCGTCCAACTCTG
GAGGTATAATAATACACCTCATGATCACCGGCACCCGTTCCCCGTGTCCGGCAGTGAGCC
CCGAGAACTGAAGTTCCGCCTTCTAAAGTTCTGCCTCGGCACTCTCCAGCTCCGCCTCCG
TAACCTCCTTTTCTAGAGCCTCGGAAAGTGAAGTTGTCAGCCTCCACGTCGCAGTCAAGC
GGCTAATCGGCCGATGACGTTGAGGCTGCCAAGCTTTCCTTCAACGGGAGGTATGGAGCG
GTGGCCTTCTTGGGACCCGAGCGGCTGCGACACTATGCACTACTCTTCCTCGCTGCCGCC
GGCGTTCGTGGACGTGCCGACTTCGTGGTCATGGCGGTGGGCAGCTCGCTGGGTCGCAAC
GGCGATGTCCTCATCGTCGCTCTTGCCGAACACCTCGACTCTCGCCTCTCCTTGTAGGCG
GCCTCCAGTTCCGCCTGACGCTAACGGTACTGTCAGAGGTCGACGTCGATCTGGCGGGCG
AAGCGGTAGGACTCGAGCAGCGCCGCCTGCTGCACCAAATCTCCTTCCGGCACGATCACC
CTGCTGACGGCAAACTGCTCCTCCACCTGCTAGTGCTCCTGAAGAAGGTGGTGGTTGTAG
GTAGCGGCTGCGTGCACCTCACGAAAATGCTTCTCCCACACCATGTCCATGTAATGGGCA
CGGGCCTTGTCGATGGTCATGGTGCAATGCACCCCGCGATGGTGGCATTGAGGAGGAGGG
TGGCATCGGGATGTTGTCGTCCTCCGGCTGCCTGCCGAAAACAAGGACAATCATATCCTT
CTTCTGGTCCATCGGCAGCTCGTTCCACGGAACTTTGGACCGCGAGAAAGTCATGGTGTG
GAGAGGAGAAAGGATCAAATGTGGATGACTACGACAGTGTATATAGCATGGCCGTGGAGG
GACGGACCGGTGGCGTCGGAGTAGACGCCTCAATAACTGCATGACATTAATGTGGGTGGC
AGACTCGCGCCACTTCTCGGCCAGTGAGAGGTAGCTTCCGCTTTGGGCGGGCATGAATGC
AACACTGACGCGCTGAAGCGAGGAAGGATTTTTTTGTGGGCCGGGACAGTCAAACACGGG
CTTTGTTGTTGTCCGGGTACCCACAAAGGACCGTCCTTCGGACTGATACAAGCCCGCGTT
GGATGAATTTCGTGATCCGCACATATGCGGGGGTTTGCGGCTCGCCGTGAGATGCCCTAA
GAGCATCTCCAACTGGCGCCCAAAAAATGCTCTGTGCGCTAAAAGATTCTTTTTTTTACG
CGGGGCAGCTTCAATAGACGCTCCAAAACAGTGCGCGCGCTAAAAAAATTTGAGCACGCG
CTGCGCTATCGCGCGCAACATCCGACTTACGCGCGCAGCAAACTCTGTGCTGCTGCCGAT
GGGGTCGTTGGATTGGGCTGGGTTGGACACCTCACTAGCCCGTGTTTTAAAAGTGCTACA
GTGACGCGCTAAAATTTTTATTGGCCGCGATATTTTCGTTCATGGTACCATGTTGAACGC
ACTCTGAAGAAACATACATATCATGATCAAGATAAGCTCATCCCTACCTCATCCACAACA
AACTGTGCATCTTATACTTCAGAAGGTGCAAAAAATGAGAGAATCAACGTGAATTTGGGC
AAAACACAAATGCAACCTTCATGACAGACTAACAGTAAATTTACTATCGGAACATGACCA
AGAAAGCTATATCATGATTTTACTATCATAGCTAAGGGTTACATACACATTAAAGAAGGT
CGAGCCACAGAATCATTTTGTCGGTATTGGTCCGTTTGATGAGCCGTTCCCAGGCCCTTT
TCCATGGAAAGCAGATTGCCTCTCTGGTCTCCCATTCGGATTTGGAGGCAACGGCAAGTT
AGGCGCAACACCATTGCTACTTGAGTCACCCTTCAGGTTCAGTTGGGACATGTTGTATAG
GTCTTCGACATTTACCGGGGGAACTGAGTGGACGGCAACAGGCCTGACAGGCTCATGTGA
TACTTGTACTGTACCTGATGATGATGCTTGCATAGAGACTGGCGGCCCATAGAACACTGG
AGCATAGCTATAGTATGGAAACGGAAAAACTGCTTGGACATAGTGAGGTGCAGGAATCAT
CATGGGAGGATAAGCATATGAGGGCATCACTTGTGGCATCACCATCCCTGCTTCTCCAGC
AGTTGAGCTTGAACCAACCGATTCATTGCCCTGAGGTTGATGTGTCATTGCTAGAACTGG
TGACGGGGCGGATGCATATGTTAGCATAGGCACAGGAGCAGGCGGTGCCATTCCTGGCAT
TGGTGGCCGGACTGAAACAGATGTTATCACGGGCATAGGAGCGGGTGGTGTCACAGGAGC
AGTAACAGGCCGTAGATCATCTACCAACTCTTCTACATCTTGTGAAGATGAACGGGAGAG
CGGCATCTCTTGTGACGATGAACGGGAGAGTGACTGGTCACCAGGCTGATTAAAAACCAT
AGAACAATCATAATCAATTGGTACAATGGGGGACAAGCAATAAATATTTTAAAAATTGTT
ATGTTTGAGAAGTCTTATTTACTTCATATAACATGGTGATTCTACGCTAACAGCTATATG
AGAACTTACTAAGGCAACAGGAACAACGAGGAAAAGAATAAGCACCACTCTTAAGAATGC
ATCCCGACATTTTTACCCGAATGCAATCAGCTGGACCTGGTTGCACAACAACACTACATG
CAGAGAAATAAAAAGGTAGGGATAGATGCTCACATCCTCAATAACCATATCGAAGAGGCT
TGATCTTCTCTTTCTCCTATTAACATTTGTTTGGCGAATGAAATACTTCTGAGCATGGCT
AGCAACTTGAGTAGGCGTCCTCGAGACAACATAATTACGGGATATGCCACGCCAATCACC
TTTTCCTAATTTATTCAATCCAAGTAGAAAATTTTTGTGCTCCTCTTCTGACCATGACTC
ACCTGTCACCCAACAAAATAAACGGATCCTTCAATGCAAATTCGACATATTCATCCAAAT
TTTTAAATCAAGCAAAAAGAAAAATCAGCAATGCCAACAGAATAAAGAACAATCATGAAG
TTACATGGAAAGTTATAACAGTACTGTATATCTATCTCACATGACAAGAATGCAAATCAT
GTATACAAAATACAGAGTGAGTGTAACCTAGTTTATGATATTGGTGGCTGTAATGAATAT
TATTTCTGGGTTGTGAAAAAATCATTTGGTCAAATAAGTGACAAAACACAAGCTTGAATG
GCAGCAGCGAAAGAGAAGCACAAGTACAGATTTGTTTCAAAATCTGTGATCCGGTACCCA
AAGGTTGCTGCACTATACCTGAAACTTCCATGACAAACTCACCATACTAAGCTCGACTAT
ACCTATTAAAAAAATAAATTTGGAAAGCAAGTCCGAACAGGCAAACAGTTACACTTGAAG
TTGTGAACATGAAGCGTCATAATCAAATATTTACTTCAAAAAATCAATTCCTTGGGTATA
AGAAACCCTCCAAAAGAACAGTAAATTCTGATGACAAGAAGCAGTCACAACCACCACTCA
CCACCAGTAAACCCCTAAATCTGTAAGTAATCGAACAAAATGATGAGCTAAAAACTCAAA
CATGAGTAGCTCCCAAGCAACTACAGTATTAAGTATAGTTTGCTAATTTTGCACACCACT
AGGCATCGTATACCAAACAAAAATCCCAACTGCCACATAACCTACTACGAGATTAAAAGC
AGTACTTTTCGCGAAGTTTCAGAAAACTACTTCGATCGGCACTGAAAACTTTCTCACTTA
CCATCTTAAAAGCCAACAGCAAAACTGCACCTTCACATTAAAACCACATATTTGCACACT
ACAACAAACAATCATCTTAACTACGTAAGAAGCATCACAGGGCGATCAAGACCACATTTT
TTTTACAGAACAGAGACTACGCCTGCATACACATGCAACAAAACAAATGATCTCATCTTC
TCCTAGGCTAAAACAGGGGAGAGAAAGAAAATAAAAATCCCACCTCGCTTCCTGTGGGGT
TTGTCGTCGTCGCCCTCGGAGCCGTACCCCTCGGCCCTGGCACCGCCGCTGCCCTCGGCG
AGCTGCGCGAGGTTGCCCATGCTGACGCTCTTCCTGATTGGCTTGTCGCCGATGCGCACG
CCGAAGAGCTTCACGGGGCGCGCTGTGCACGTGCGTGCGTTGTGCCCGTGGTGCCCGCAC
TGCCCGCATCGCCTCGGCCCGTCCCCAGCACCGCCGCCGGCAGGCGCCGCCGGTGGCACG
CCGTCCCGCGTCATGGCAGGCAGGCAGGCTAGGGTTGTGGATTTTATATTTTAATCTATT
ATATCTAGGTGATTTGATCCGTCTTTTTCTTTTCTCCTCTGGTGGTGTGTCGTGTATTTA
TCGTCGGCGAAGGAGGAAAGCGTATAAGCAGTATACGGCGAGAGATGAGCTGGGAATTTT
CCTTATCTGTAGAAAAAACAGCCTTTTATGTACTGGCGGTGACATTTGGATTTTGCTCGA
GTTTTTTCACCTTCGCAGTCAAGACGTGACACCAGATATTGTACAGCCTGGATTTTATTT
GGTGGTTAAATGTAGATTGTTCATATTAATATGGATGATTTTCAAAATAAATATTAGTAT
GGATACATATCTGTGTAAAACTGATAGTACAGTAATATTGAGTATATGATGTGGATTCTT
TGTATCTGTTGATTTCCTTTTGTACTTCTTACATTTCTTTACGAAGGAAGTATAATATAA
AATCTCTTACACTAATAGATATAATATTGGTGACACATAATTTTAAAACATATAATACTC
AAAATAGCATGATATTACATTGTTTTGGAAATCATGCATATCAAGGACCATGAGATTACA
CCCAAATGACTTGGATGATACTAACTGATTCCTCGTGAATTAAGGTGGCTGATAGGAACC
ACTTATCGCAAAAGATAATGTGTCTTAGTTTGGACGTGGACACATGTGTTTTTCTCATTT
TATGGACGGTAAGGCAACATGTTATTGGAGTCATGATGAGTGGAGAAAGGCTTCCATAAA
ACAAACCAACCAATTTTGTTGAGATATGAGGCAACAGTTCATTGATAGAAAGGGTTTCCT
TTTCTTCGATTCTATATATGGTTGAGAACAAAAAAGAACATAGTGGTGTTCGGCGGATAA
GTTAATATTTTTTGTCCCATGGTATGTTTTCATACTTGTTCAGTTTGTGCGACACGGTTT
TTGTGATATTTAGTAGTTTCCATAGACAAACTGAATGGGAAAGAAACGCCATCGAGTGCA
TTTTTTGGCTTCCTAAAATTAAGAGCATAGCAAACGTATCACAGACCACCGACATAATAG
CATTTACAACAGGGGAGGAGCCAGGATAGCACTAGCCCCGTGATCGCTTTAATGCTAAAA
TCATCTACAACACGATAGGATGTAAAATATAGTTTGTGCAAGGGATTCATAGCCTAAGCA
ATGGCCACAAGGTTTATGTCTCACCTCCACCACCGATTTACAGCGTTGACTCCTTAAGTA
GATGCTTAAGTAGGAAACATGCAAACAAAAATAAAACATCCAAAAAATATAAATGAATTC
CCCACCCCACCCAACCCCCCAAAAAGAAAGTTCATAACGAAGACGTTGACTATAACTTTC
TGTTTCCATGTCGTAAGGCAAAAAATTAAGGAGTGCTCAACTCAACTTTTTGATTCGACA
CAACAAGAGGGGCCAGGATTCTACCCATCAACTGCCCATCGACGAGAACAAAATCCTAGC
ACCCCTTTTAGGCATTTCGTTGTGGATACTCTAACAATTTATACAGGCAAGATTTCATAT
AATGTAAGAAATGAAGCTATAGAGGTGATCATACAACGCCTACATATAATTTTTCTTTGT
CATCATCGTTCTATTATTTTGTTTGCTGAGATGTCAAACACTTTATGCCATAATTTATTT
ACTAAATTTGGGAGCATTAATTAGGCCATGTTTGGTTTGGCTTTCCCCATCGGATTCTGT
TGCGTCAGAGCTGACTGTCAACCAAACAAAGAACTGTGCCACCGTGATTTTTGAAAGCCA
TATAAAAAACGCACGTACGCGTGAAAGCGGCGGTCGAGGTGCTTTTGCGGCTTTGGCTAC
ATGGCCTTTCCAATTTACCCCTATGAATTTAACCACCTTTGCCATTCGTAAGTGAATACT
GTTTCGATCTATTTCCTTCCTGCAAGCTGGTCAGCCATTGAGCGACGAAGGAAGGTGAAG
AGCTCCTAATTTTCATCGATGAAGAGCGATTAGGCCCTGATCGATTGATCGAAGTGCAAG
GGTAGCTAGCACATGATGCATGCACACGTTGTGATGCTCTCCGTGGTATCAAAATATCAT
ATTGATCGTAAGAGTTAGATAATTATTTAGTTAGATTTTTATTAGTGCTCTAAATCGACA
TGTAATGATGTTATTATCATTAATCAACATGCAATCAATCTCTCAACTTTCGGGGTATTT
CACACATTTATCTCCACAACCACAGATCATATAGCTAGTTTGCCAAATGAACTACAACTT
TCTCACATCATATTTTTCGTAGCTACTTTTCCACAACAGTTTTTTCGGAGCTCCTTCCAA
GAATCCACAACCCAGCCAAACACCACCTTAATGTTTCAATTTATAGATTAACAATAAGAA
GAGGTCACATTCTTGGGTGATGTGGCAAGAGGGGATCATTCCTGCACCATATGGTCCATG
GCATCATTAGGCCAGTAATATGGGTGCAGTTGTGCGCATTTCCTCGGTTTAGTCACTGTT
GCTTCCTGGAATTTCAAGCACGAGACTCCACCTGTAACAACCTGAGACCGACACTCCAGA
TGCCTTCCATTTATTTCGAGTGTTGTCGTGTGATTCATCTGTTTGTCGCATTCATCATCT
CATCATTCACATCATTAACATTGCATCAACACTCCGTTACCATTATTTTTTCAAAACTTG
CATCCGTTCATAGTTGTTGGTTCTCTCCGCTGTCGTCATTGACTTTTTCATGACCAACCA
CACATGCACACGCCCGCGACATAGTTAAAGTATTGTTTTTAAAGGTGCATTTAATTATTA
TTTTTGGAATGGGTTGTAGAATCTGAAGTATGTCTAGAGGGGGGGTGTTTAGACTACTTG
ACCAAATAAAAACTTTGCCTTTTCCCAATTTTAGTNNNGGGCCAGTTTTAGCAGTTGTAA
CAAGTCAAGCACACCCTACAC